mRNA_M-pyrifera_M_contig102912.615.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102912.615.1
Unique NamemRNA_M-pyrifera_M_contig102912.615.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102912.615.1 vs. uniprot
Match: A0A7S4IH20_9EUKA (Synaptosomal-associated protein 47 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH20_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 5.980e-7
Identity = 39/125 (31.20%), Postives = 70/125 (56.00%), Query Frame = 1 
Query:    1 QKLDARNEYLRETFDVPDTEVVIQDYVCRLYRFDSHTDEDPSTKVSHSGRVYVTQNYVLFQSSINEQVKFHVPLCRV--ISCEHWARWLKSTKLVTEIGEVYYISLVRHGLSLYNLVHHLWCFEP 369
            +K+  + E +R  F+VP +E+VIQDY C L + ++          S+SGR+++TQNY+LF S  ++Q++  +   RV  I+ E     + S  +  + G++     V H    +NL++HL  ++P
Sbjct:   31 EKMQEKVELIRSVFNVPQSELVIQDYRCTLKKNNN----------SYSGRLFITQNYMLFLSK-DKQIRDTMAFYRVSGITRETTTLVIPSIGVELDTGKILLKGFV-HRDETFNLLNHLINYQP 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102912.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4IH20_9EUKA5.980e-731.20Synaptosomal-associated protein 47 n=1 Tax=Vannell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102912contigM-pyrifera_M_contig102912:3..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.6158144-CDS-M-pyrifera_M_contig102912:2..3771622815533.6158144-CDS-M-pyrifera_M_contig102912:2..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102912 3..377 +
1692277452.7504878-CDS-M-pyrifera_M_contig102912:2..3771692277452.7504878-CDS-M-pyrifera_M_contig102912:2..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102912 3..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102912.615.1prot_M-pyrifera_M_contig102912.615.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102912 3..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102912.615.1

>prot_M-pyrifera_M_contig102912.615.1 ID=prot_M-pyrifera_M_contig102912.615.1|Name=mRNA_M-pyrifera_M_contig102912.615.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
QKLDARNEYLRETFDVPDTEVVIQDYVCRLYRFDSHTDEDPSTKVSHSGR
VYVTQNYVLFQSSINEQVKFHVPLCRVISCEHWARWLKSTKLVTEIGEVY
YISLVRHGLSLYNLVHHLWCFEPFF
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mRNA from alignment at M-pyrifera_M_contig102912:3..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102912.615.1 ID=mRNA_M-pyrifera_M_contig102912.615.1|Name=mRNA_M-pyrifera_M_contig102912.615.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig102912:3..377+ (Macrocystis pyrifera P11B4 male)
CAGAAGCTCGATGCCAGGAATGAGTATCTGAGGGAGACGTTCGACGTTCC
CGACACGGAGGTGGTCATCCAAGACTACGTGTGCCGCCTCTACCGCTTCG
ACTCGCACACGGACGAGGACCCCAGCACCAAAGTCTCGCACAGCGGCCGC
GTGTACGTCACGCAGAACTACGTGCTCTTCCAGAGCAGCATCAACGAGCA
GGTCAAGTTCCACGTGCCTCTGTGCCGCGTCATCTCCTGCGAGCATTGGG
CGCGGTGGCTCAAGAGCACCAAGCTGGTGACGGAGATAGGCGAGGTGTAC
TACATCAGCCTCGTGCGCCACGGCCTCTCCCTCTACAACCTGGTGCACCA
CCTGTGGTGCTTCGAGCCCTTCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102912:3..377+

>mRNA_M-pyrifera_M_contig102912.615.1 ID=mRNA_M-pyrifera_M_contig102912.615.1|Name=mRNA_M-pyrifera_M_contig102912.615.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig102912:3..377+ (Macrocystis pyrifera P11B4 male)
CAGAAGCTCGATGCCAGGAATGAGTATCTGAGGGAGACGTTCGACGTTCC
CGACACGGAGGTGGTCATCCAAGACTACGTGTGCCGCCTCTACCGCTTCG
ACTCGCACACGGACGAGGACCCCAGCACCAAAGTCTCGCACAGCGGCCGC
GTGTACGTCACGCAGAACTACGTGCTCTTCCAGAGCAGCATCAACGAGCA
GGTCAAGTTCCACGTGCCTCTGTGCCGCGTCATCTCCTGCGAGCATTGGG
CGCGGTGGCTCAAGAGCACCAAGCTGGTGACGGAGATAGGCGAGGTGTAC
TACATCAGCCTCGTGCGCCACGGCCTCTCCCTCTACAACCTGGTGCACCA
CCTGTGGTGCTTCGAGCCCTTCTTCCAGAAGCTCGATGCCAGGAATGAGT
ATCTGAGGGAGACGTTCGACGTTCCCGACACGGAGGTGGTCATCCAAGAC
TACGTGTGCCGCCTCTACCGCTTCGACTCGCACACGGACGAGGACCCCAG
CACCAAAGTCTCGCACAGCGGCCGCGTGTACGTCACGCAGAACTACGTGC
TCTTCCAGAGCAGCATCAACGAGCAGGTCAAGTTCCACGTGCCTCTGTGC
CGCGTCATCTCCTGCGAGCATTGGGCGCGGTGGCTCAAGAGCACCAAGCT
GGTGACGGAGATAGGCGAGGTGTACTACATCAGCCTCGTGCGCCACGGCC
TCTCCCTCTACAACCTGGTGCACCACCTGTGGTGCTTCGAGCCCTTCTTC
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