mRNA_M-pyrifera_M_contig102848.610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102848.610.1
Unique NamemRNA_M-pyrifera_M_contig102848.610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102848.610.1 vs. uniprot
Match: A0A7S0J3B0_9EUKA (Alpha-galactosidase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J3B0_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 3.790e-5
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:   10 QVWAGPLANGEFVVALLNAQNDGKNATITANFTIAGIP---TTTSFTATDAYSGEVEHGVMGGVSRTVAAHDVAALLLTP 240
            +VW GPLANG +V+AL+N      +  I+A F   G+P   T +SF   D ++ +      G +S  V AHD+A + L+P
Sbjct:  531 EVWGGPLANGAYVIALVNRFTQPLH--ISAPFAALGVPSIGTRSSFNVRDLWAHKSLGRATGKISAIVPAHDIALMRLSP 608
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102848.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0J3B0_9EUKA3.790e-537.50Alpha-galactosidase n=1 Tax=Calcidiscus leptoporus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102848contigM-pyrifera_M_contig102848:140..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.7500362-CDS-M-pyrifera_M_contig102848:139..3851622815532.7500362-CDS-M-pyrifera_M_contig102848:139..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102848 140..385 +
1692277452.3180287-CDS-M-pyrifera_M_contig102848:139..3851692277452.3180287-CDS-M-pyrifera_M_contig102848:139..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102848 140..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102848.610.1prot_M-pyrifera_M_contig102848.610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102848 140..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102848.610.1

>prot_M-pyrifera_M_contig102848.610.1 ID=prot_M-pyrifera_M_contig102848.610.1|Name=mRNA_M-pyrifera_M_contig102848.610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
NALQVWAGPLANGEFVVALLNAQNDGKNATITANFTIAGIPTTTSFTATD
AYSGEVEHGVMGGVSRTVAAHDVAALLLTPE*
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mRNA from alignment at M-pyrifera_M_contig102848:140..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102848.610.1 ID=mRNA_M-pyrifera_M_contig102848.610.1|Name=mRNA_M-pyrifera_M_contig102848.610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig102848:140..385+ (Macrocystis pyrifera P11B4 male)
AATGCTCTACAAGTTTGGGCAGGCCCACTTGCCAATGGAGAGTTTGTGGT
TGCACTCTTGAATGCTCAAAATGACGGCAAGAACGCAACCATCACTGCAA
ACTTTACCATCGCAGGAATACCAACAACAACATCCTTCACGGCAACCGAT
GCATATAGTGGTGAGGTGGAGCATGGGGTGATGGGTGGGGTTTCGAGGAC
TGTAGCTGCGCATGATGTTGCTGCGCTTCTACTCACACCGGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102848:140..385+

>mRNA_M-pyrifera_M_contig102848.610.1 ID=mRNA_M-pyrifera_M_contig102848.610.1|Name=mRNA_M-pyrifera_M_contig102848.610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig102848:140..385+ (Macrocystis pyrifera P11B4 male)
AATGCTCTACAAGTTTGGGCAGGCCCACTTGCCAATGGAGAGTTTGTGGT
TGCACTCTTGAATGCTCAAAATGACGGCAAGAACGCAACCATCACTGCAA
ACTTTACCATCGCAGGAATACCAACAACAACATCCTTCACGGCAACCGAT
GCATATAGTGGTGAGGTGGAGCATGGGGTGATGGGTGGGGTTTCGAGGAC
TGTAGCTGCGCATGATGTTGCTGCGCTTCTACTCACACCGGAATGAAATG
CTCTACAAGTTTGGGCAGGCCCACTTGCCAATGGAGAGTTTGTGGTTGCA
CTCTTGAATGCTCAAAATGACGGCAAGAACGCAACCATCACTGCAAACTT
TACCATCGCAGGAATACCAACAACAACATCCTTCACGGCAACCGATGCAT
ATAGTGGTGAGGTGGAGCATGGGGTGATGGGTGGGGTTTCGAGGACTGTA
GCTGCGCATGATGTTGCTGCGCTTCTACTCACACCGGAATGA
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