mRNA_M-pyrifera_M_contig13549.5991.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI) HSP 1 Score: 231 bits (588), Expect = 7.330e-67 Identity = 136/205 (66.34%), Postives = 151/205 (73.66%), Query Frame = 1
Query: 235 GPPAAGGL---SSRREAFAKVARARGAHFARPDKTPSSGTGRAAASGVAR------NGKGRGKANVGGRGGGVADGGASGDATPELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDD--SDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMK 816
G AA G+ +SRREAFA+VARARGAHFARPDK P+ GT RA +G+ RG A+ A G GDA ELWPGPFAEARRLMD RE AAALRES RVNGKA+ SD+D SD EGD+ P PIKV+W P GKGSRSGKS+ IPSLFRLCLDLLAD FDHIESLGDVSPEVRNHLA V+CRQLKLTTE ++
Sbjct: 152 GDAAADGVRTVNSRREAFAQVARARGAHFARPDKPPAPGTARAXXXXXXXXXXXXXSGRRRGAASD------AASAGEGGDAPKELWPGPFAEARRLMDNREAAAALRESIRVNGKAQPASDEDGDSDDEGDETPPPIKVDWKPTGKGSRSGKSRTIPSLFRLCLDLLADNFDHIESLGDVSPEVRNHLAAVMCRQLKLTTEALQ 350
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A836CJL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.210e-19 Identity = 91/244 (37.30%), Postives = 114/244 (46.72%), Query Frame = 1
Query: 259 SSRREAFAKVARARGAHFARPDKTPSSGTGRAAASGVARNGKGRGKANVGGRGGGVADGGASGDATPELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDME-GD----KPPAPI---------------------KVEW----TPRGKGSRSGKSKAIPSLFRLCLD-----------------------------LLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVM 813
S+ REA A+VAR R AHFAR DKTP A A V R A G A+ A PE W GPFA ARRL++ R +AAA R+ ++NG E +S++DSD E GD KP P + W RG+GS G++ + LF LCL L+AD FD +E LGDV+PEVRN L +LCRQL+LT EV+
Sbjct: 192 SNLREAQARVARDRAAHFARVDKTPE-----ATAPAVVRRIS-------------SAGGSAAAAAEPEEWCGPFATARRLLNARADAAAARQR-KLNG--EDVSEEDSDAENGDGSAKKPAKPAHKGANYARRCATDGVRSGTVPQAAWWWSGEGRGRGSLIGRACRVAPLFNLCLSVVVQWXXXXXXXXXXXXXXXXXXXXXXXXLVADNFDCVEELGDVTPEVRNRLGALLCRQLQLTPEVL 414
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A2H9ZUT8_9ASPA (F-box protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZUT8_9ASPA) HSP 1 Score: 67.8 bits (164), Expect = 4.380e-9 Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 460 ELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
E WPGPF+ A +++++RE A LRE K + +S+ +K+ WTP K K+ PSL LC+D+L D + IESL + +++ LA +LCR ++++ V+ L
Sbjct: 445 EDWPGPFSTAMKIIEERE--AMLRERELNYSKKDGISE-------------VKIPWTPSIKQKPVTLEKSAPSLKDLCMDVLCDNAEEIESLEGLPDAIKSKLAMLLCRLRRMSSRVLGL 549
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A250X4M3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4M3_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 4.180e-7 Identity = 43/121 (35.54%), Postives = 71/121 (58.68%), Query Frame = 1
Query: 472 GPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDMEGDKPPAPI-KVEWTPR---GKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKLW 822
GP++ A L++ R++A A RE ++ G+A A + + D P P+ K++W+P +G R G S AIP+LF LCL +L + D I+SL V +R LA +C + +++ EV +L+
Sbjct: 78 GPWSSAVELVNARQKAQAARED-KLQGRAVAAVNGEED-----PAQPVPKIQWSPTRDVSQGPRPGPS-AIPALFTLCLTVLNEYVDCIDSLVGVPDTIRIKLAAFVCSKRRMSKEVAQLF 191
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: UPI0009E4E98B (uncharacterized protein LOC110023180 isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4E98B) HSP 1 Score: 60.1 bits (144), Expect = 1.560e-6 Identity = 36/127 (28.35%), Postives = 62/127 (48.82%), Query Frame = 1
Query: 448 DATPELWPGPFAEARRLMDKREE---AAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
DA E WPGPF+ A +++ +RE A +L S+ NG+AE +K+ WTP K P L LCL +L + + +ESL + +++++A +LC +++ ++ L
Sbjct: 445 DANEEDWPGPFSTAMKIIAERESILSARSLNYSSLNNGEAE-----------------VKIPWTPSNAQRHKTVGKLAPQLKDLCLKVLCENAEEVESLEGLPDVIKHNIAMLLCHSRRMSFRLLGL 554
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: UPI00098E7452 (uncharacterized protein LOC109845156 isoform X2 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7452) HSP 1 Score: 58.5 bits (140), Expect = 4.180e-6 Identity = 35/120 (29.17%), Postives = 58/120 (48.33%), Query Frame = 1
Query: 460 ELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
E WPGPF+ A +++ RE+ RE +N ++ D A +K++W+P K+ PSL LC+ +L D + +ESL V +++ LCR K+ + V+ L
Sbjct: 145 EDWPGPFSTAMKIIRDREQILIARE---LNSSSKKNDD-----------AGVKIQWSPSKDKKVKTFGKSPPSLHDLCMKVLCDNAEEVESLYGVPDAIKHRFVSHLCRSRKMGSRVLGL 250
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A5P1EJZ8_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EJZ8_ASPOF) HSP 1 Score: 58.5 bits (140), Expect = 4.730e-6 Identity = 35/120 (29.17%), Postives = 58/120 (48.33%), Query Frame = 1
Query: 460 ELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
E WPGPF+ A +++ RE+ RE +N ++ D A +K++W+P K+ PSL LC+ +L D + +ESL V +++ LCR K+ + V+ L
Sbjct: 262 EDWPGPFSTAMKIIRDREQILIARE---LNSSSKKNDD-----------AGVKIQWSPSKDKKVKTFGKSPPSLHDLCMKVLCDNAEEVESLYGVPDAIKHRFVSHLCRSRKMGSRVLGL 367
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A835SCW4_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835SCW4_VANPL) HSP 1 Score: 57.8 bits (138), Expect = 8.670e-6 Identity = 35/120 (29.17%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 460 ELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
E WPGPF+ A +++ +RE KA +L S +E D+ +KV+WTP + + K PSL LC+++L + + +ESL + +++ L +LC ++++ V L
Sbjct: 458 EDWPGPFSTAMKIIKERESML----------KARSLK---SSLEKDRE---VKVQWTPSNEQKTAKMGKLAPSLKDLCVNVLYENVEEVESLECLPDAIKHKLVNLLCHSRRMSSHVFGL 561
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A835S3I5_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S3I5_VANPL) HSP 1 Score: 56.6 bits (135), Expect = 2.090e-5 Identity = 34/120 (28.33%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 460 ELWPGPFAEARRLMDKREEAAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
E WPGPF+ A +++ +RE KA +L S +E D+ +K++WTP + + K PSL LC+++L + + +ESL + +++ L +LC ++++ V L
Sbjct: 342 EDWPGPFSTAMKIIKERESML----------KARSLK---SSLEKDRE---VKIQWTPSNEQKTAKIGKLAPSLKDLCVNVLYENVEEVESLECLPDAIKHKLVNLLCHSRRMSSHVFGL 445
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Match: A0A2I0VCT1_9ASPA (F-box/LRR-repeat protein 4 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VCT1_9ASPA) HSP 1 Score: 56.6 bits (135), Expect = 2.170e-5 Identity = 35/123 (28.46%), Postives = 62/123 (50.41%), Query Frame = 1
Query: 460 ELWPGPFAEARRLMDKREE---AAALRESARVNGKAEALSDDDSDMEGDKPPAPIKVEWTPRGKGSRSGKSKAIPSLFRLCLDLLADKFDHIESLGDVSPEVRNHLAGVLCRQLKLTTEVMKL 819
E WPGPF+ A +++++RE+ A L S+ +G+AEA K+ WTP K +P L LCL +L + + IESL + +++++A +LC ++++ + L
Sbjct: 456 EDWPGPFSTAMKIIEEREQMLRARNLNFSSVKDGEAEA-----------------KIPWTPSNMRRHITVGKIVPPLKDLCLKVLCENAEEIESLEGLPDAIKHNIALMLCNSRRMSSHFLGL 561 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13549.5991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13549.5991.1 >prot_M-pyrifera_M_contig13549.5991.1 ID=prot_M-pyrifera_M_contig13549.5991.1|Name=mRNA_M-pyrifera_M_contig13549.5991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=276bp SAGQTTPPLPLPPPPPPPCQSAAESPSGGLTAAAAAASPASTAAAAAASSback to top mRNA from alignment at M-pyrifera_M_contig13549:566..5229- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13549.5991.1 ID=mRNA_M-pyrifera_M_contig13549.5991.1|Name=mRNA_M-pyrifera_M_contig13549.5991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4664bp|location=Sequence derived from alignment at M-pyrifera_M_contig13549:566..5229- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13549:566..5229- >mRNA_M-pyrifera_M_contig13549.5991.1 ID=mRNA_M-pyrifera_M_contig13549.5991.1|Name=mRNA_M-pyrifera_M_contig13549.5991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1656bp|location=Sequence derived from alignment at M-pyrifera_M_contig13549:566..5229- (Macrocystis pyrifera P11B4 male)back to top |