mRNA_M-pyrifera_M_contig13543.5990.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13543.5990.1
Unique NamemRNA_M-pyrifera_M_contig13543.5990.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13543.5990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13543contigM-pyrifera_M_contig13543:2245..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size574
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13543.5990.1prot_M-pyrifera_M_contig13543.5990.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13543 2359..2682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.7426186-UTR-M-pyrifera_M_contig13543:2244..23581622815819.7426186-UTR-M-pyrifera_M_contig13543:2244..2358Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13543 2245..2358 +
1692277587.3512783-UTR-M-pyrifera_M_contig13543:2244..23581692277587.3512783-UTR-M-pyrifera_M_contig13543:2244..2358Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13543 2245..2358 +
1622815819.7657497-UTR-M-pyrifera_M_contig13543:2682..28181622815819.7657497-UTR-M-pyrifera_M_contig13543:2682..2818Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13543 2683..2818 +
1692277587.3758147-UTR-M-pyrifera_M_contig13543:2682..28181692277587.3758147-UTR-M-pyrifera_M_contig13543:2682..2818Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13543 2683..2818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.7545834-CDS-M-pyrifera_M_contig13543:2358..26821622815819.7545834-CDS-M-pyrifera_M_contig13543:2358..2682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13543 2359..2682 +
1692277587.3617165-CDS-M-pyrifera_M_contig13543:2358..26821692277587.3617165-CDS-M-pyrifera_M_contig13543:2358..2682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13543 2359..2682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13543.5990.1

>prot_M-pyrifera_M_contig13543.5990.1 ID=prot_M-pyrifera_M_contig13543.5990.1|Name=mRNA_M-pyrifera_M_contig13543.5990.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MLQVAQTPACVRLPRPRIRAVTTAISLTAGQFPPAKHNPVRSGPKLSIQQ
PTNQLFLEAELSPHSGCPIISRERLNVFPRADQTCMFQSVAQLFPAANQS
YTPRRTD*
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mRNA from alignment at M-pyrifera_M_contig13543:2245..2818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13543.5990.1 ID=mRNA_M-pyrifera_M_contig13543.5990.1|Name=mRNA_M-pyrifera_M_contig13543.5990.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=574bp|location=Sequence derived from alignment at M-pyrifera_M_contig13543:2245..2818+ (Macrocystis pyrifera P11B4 male)
CCTCCATACGCGCCTACATGCTGCACACCACGGGCGGGCAACGTATGTAC
CCAGAAAAAAAATCACCTGGCTGTACGTATTTTTACCTCTTTCACGCATC
GATGCCAGGTGGTGATGTTGCAAGTCGCCCAGACACCGGCCTGCGTGCGT
CTTCCCAGACCGCGAATCAGGGCCGTGACCACAGCCATCTCTCTCACGGC
CGGTCAATTCCCGCCAGCCAAACATAACCCCGTACGTAGTGGACCAAAAT
TGTCCATACAGCAACCGACCAATCAGCTCTTCTTGGAGGCCGAGCTATCG
CCTCATAGCGGTTGTCCAATAATCTCCCGGGAGAGACTAAATGTCTTCCC
CCGAGCCGACCAAACATGTATGTTCCAGTCGGTCGCGCAATTGTTTCCCG
CGGCCAACCAATCATATACTCCGAGGCGGACGGACTAAATCATGCCCCAG
GACCGAGAACTCGTCTCCCGCGGGCCAACCAATCATATTCCACGGCCGAA
AATACTATCCTGCGCCCGATCAATCAAATCACGTCGCCGGACCGGGGAAT
ATCACCTCCCGCGGCCAACCAATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13543:2245..2818+

>mRNA_M-pyrifera_M_contig13543.5990.1 ID=mRNA_M-pyrifera_M_contig13543.5990.1|Name=mRNA_M-pyrifera_M_contig13543.5990.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig13543:2245..2818+ (Macrocystis pyrifera P11B4 male)
ATGTTGCAAGTCGCCCAGACACCGGCCTGCGTGCGTCTTCCCAGACCGCG
AATCAGGGCCGTGACCACAGCCATCTCTCTCACGGCCGGTCAATTCCCGC
CAGCCAAACATAACCCCGTACGTAGTGGACCAAAATTGTCCATACAGCAA
CCGACCAATCAGCTCTTCTTGGAGGCCGAGCTATCGCCTCATAGCGGTTG
TCCAATAATCTCCCGGGAGAGACTAAATGTCTTCCCCCGAGCCGACCAAA
CATGTATGTTCCAGTCGGTCGCGCAATTGTTTCCCGCGGCCAACCAATCA
TATACTCCGAGGCGGACGGACTAAATGTTGCAAGTCGCCCAGACACCGGC
CTGCGTGCGTCTTCCCAGACCGCGAATCAGGGCCGTGACCACAGCCATCT
CTCTCACGGCCGGTCAATTCCCGCCAGCCAAACATAACCCCGTACGTAGT
GGACCAAAATTGTCCATACAGCAACCGACCAATCAGCTCTTCTTGGAGGC
CGAGCTATCGCCTCATAGCGGTTGTCCAATAATCTCCCGGGAGAGACTAA
ATGTCTTCCCCCGAGCCGACCAAACATGTATGTTCCAGTCGGTCGCGCAA
TTGTTTCCCGCGGCCAACCAATCATATACTCCGAGGCGGACGGACTAA
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