mRNA_M-pyrifera_M_contig13320.5911.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13320.5911.1
Unique NamemRNA_M-pyrifera_M_contig13320.5911.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: UPI001ED9DE6D (HEAT repeat domain-containing protein n=1 Tax=Anaerosalibacter bizertensis TaxID=932217 RepID=UPI001ED9DE6D)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-16
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQFV 171
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q V
Sbjct:   35 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLV 91
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BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: A0A8B7JU88_9AVES (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Apteryx mantelli mantelli TaxID=202946 RepID=A0A8B7JU88_9AVES)

HSP 1 Score: 74.7 bits (182), Expect = 5.730e-16
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q
Sbjct:   31 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 85
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BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: A0A7R9ZAE3_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9ZAE3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.710e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    7 RLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            RLNIIS L A+N VIGV LLS SLLPAI+DLAED KWR+RLAII+H P+LA Q
Sbjct:    1 RLNIISSLSALNEVIGVDLLSQSLLPAILDLAEDGKWRIRLAIIQHIPLLAKQ 53
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BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: A0A1V4JV39_PATFA (Uncharacterized protein n=2 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JV39_PATFA)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q
Sbjct:   44 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 98
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BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: A0A401PP40_SCYTO (Uncharacterized protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PP40_SCYTO)

HSP 1 Score: 75.9 bits (185), Expect = 1.170e-15
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQFV 171
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q V
Sbjct:  135 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLV 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: UPI0005238871 (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Nestor notabilis TaxID=176057 RepID=UPI0005238871)

HSP 1 Score: 74.3 bits (181), Expect = 1.400e-15
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLA 159
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA
Sbjct:   10 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 62
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BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: A0A2G9RED8_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RED8_LITCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.530e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q
Sbjct:  101 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDTKWRVRLAIIEYMPLLAGQ 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: A0A7K1ING3_9ACTN (HEAT repeat domain-containing protein (Fragment) n=1 Tax=Nitriliruptoraceae bacterium ZYF776 TaxID=2604685 RepID=A0A7K1ING3_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-15
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 VRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            VRLNIIS L+ VN V+G+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q
Sbjct:    7 VRLNIISNLECVNQVMGITQLSQSLLPAIVELAEDSKWRVRLAIIEYMPLLASQ 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: UPI0006B86410 (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=UPI0006B86410)

HSP 1 Score: 74.7 bits (182), Expect = 2.390e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q
Sbjct:   17 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Match: UPI0004F0F8B7 (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0F8B7)

HSP 1 Score: 74.7 bits (182), Expect = 3.100e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTPVLAIQ 165
            +VRLNIIS L  VN VIG+  LS SLLPAIV+LAED KWRVRLAIIE+ P+LA Q
Sbjct:   63 EVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13320.5911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001ED9DE6D1.480e-1671.93HEAT repeat domain-containing protein n=1 Tax=Anae... [more]
A0A8B7JU88_9AVES5.730e-1672.73serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A7R9ZAE3_9STRA8.710e-1675.47Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
A0A1V4JV39_PATFA1.080e-1572.73Uncharacterized protein n=2 Tax=Patagioenas fascia... [more]
A0A401PP40_SCYTO1.170e-1571.93Uncharacterized protein n=1 Tax=Scyliorhinus toraz... [more]
UPI00052388711.400e-1573.58serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A2G9RED8_LITCT1.530e-1572.73Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]
A0A7K1ING3_9ACTN1.590e-1572.22HEAT repeat domain-containing protein (Fragment) n... [more]
UPI0006B864102.390e-1572.73serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
UPI0004F0F8B73.100e-1572.73serine/threonine-protein phosphatase 2A 65 kDa reg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13320contigM-pyrifera_M_contig13320:977..1147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score72.8
Seed ortholog evalue5.9e-11
Seed eggNOG ortholog132908.ENSPVAP00000009052
Preferred namePPP2R1B
KEGG koko:K03456
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0006915,GO:0008150,GO:0008219,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0023051,GO:0023056,GO:0032502,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0044425,GO:0045121,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0060561,GO:0065007,GO:0098589,GO:0098805,GO:0098857,GO:1902742,GO:2001233,GO:2001235,GO:2001236,GO:2001238,GO:2001239,GO:2001241
EggNOG free text desc.Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta
EggNOG OGs38DRM@33154,3B9UG@33208,3CXII@33213,3J7UA@40674,47ZD8@7711,491BQ@7742,4KP6X@9397,KOG0211@1,KOG0211@2759
COG Functional cat.T
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.4684162-CDS-M-pyrifera_M_contig13320:976..11471622815813.4684162-CDS-M-pyrifera_M_contig13320:976..1147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13320 977..1147 -
1692277583.309868-CDS-M-pyrifera_M_contig13320:976..11471692277583.309868-CDS-M-pyrifera_M_contig13320:976..1147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13320 977..1147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13320.5911.1prot_M-pyrifera_M_contig13320.5911.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13320 977..1147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13320.5911.1

>prot_M-pyrifera_M_contig13320.5911.1 ID=prot_M-pyrifera_M_contig13320.5911.1|Name=mRNA_M-pyrifera_M_contig13320.5911.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
QVRLNIISGLQAVNGVIGVHLLSASLLPAIVDLAEDKKWRVRLAIIEHTP
VLAIQFV
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mRNA from alignment at M-pyrifera_M_contig13320:977..1147-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13320.5911.1 ID=mRNA_M-pyrifera_M_contig13320.5911.1|Name=mRNA_M-pyrifera_M_contig13320.5911.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig13320:977..1147- (Macrocystis pyrifera P11B4 male)
CAGGTGCGACTGAACATAATTTCGGGTTTGCAAGCGGTGAACGGCGTTAT
TGGTGTGCACTTGCTGAGCGCGTCCCTGCTGCCGGCTATCGTCGATCTCG
CCGAGGACAAGAAGTGGCGAGTGAGGCTAGCCATCATCGAGCACACCCCG
GTGCTCGCCATCCAATTTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13320:977..1147-

>mRNA_M-pyrifera_M_contig13320.5911.1 ID=mRNA_M-pyrifera_M_contig13320.5911.1|Name=mRNA_M-pyrifera_M_contig13320.5911.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig13320:977..1147- (Macrocystis pyrifera P11B4 male)
CAGGTGCGACTGAACATAATTTCGGGTTTGCAAGCGGTGAACGGCGTTAT
TGGTGTGCACTTGCTGAGCGCGTCCCTGCTGCCGGCTATCGTCGATCTCG
CCGAGGACAAGAAGTGGCGAGTGAGGCTAGCCATCATCGAGCACACCCCG
GTGCTCGCCATCCAATTTGTGCAGGTGCGACTGAACATAATTTCGGGTTT
GCAAGCGGTGAACGGCGTTATTGGTGTGCACTTGCTGAGCGCGTCCCTGC
TGCCGGCTATCGTCGATCTCGCCGAGGACAAGAAGTGGCGAGTGAGGCTA
GCCATCATCGAGCACACCCCGGTGCTCGCCATCCAATTTGTG
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