mRNA_M-pyrifera_M_contig13276.5899.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13276.5899.1
Unique NamemRNA_M-pyrifera_M_contig13276.5899.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13276.5899.1 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.130e-76
Identity = 134/190 (70.53%), Postives = 151/190 (79.47%), Query Frame = 1 
Query:    1 RPTAHIRRTIAETSASSWSPSSGIRRRNSATSTAMFFDFGKKKTSDVNARPVAGGTVKGGKKTKIVQEVSPELQRQREAAQK-KVVARKA-TKKTEGVFTPPQFEAFKKARKEVPSGSGDEYWQKIAAKVPGQNAAACKRVAESMLFEAAVGSKSNYFGGYIEVKETPDYVDPEADIMFKINKLFGRTKK 564
            RP+ H  R     S S  +  +G RR   ++ T MFFDFGKK  S  NARP+AGGTVKGGKKTKI Q+V+P  +R +E A   +  +RKA T+K+EGVFTPPQFEAFKKARKEVPSG GD YW+KIAA+VPGQNAAACKRVAESMLFEAAVG+KSNYFGGYIE  ETPDYVDPEADIMFKINKLFGR KK
Sbjct:   25 RPSLHTHRAATTASRSLQASRAGSRR---SSQTRMFFDFGKKTES--NARPMAGGTVKGGKKTKITQDVTPAQRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209
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BLAST of mRNA_M-pyrifera_M_contig13276.5899.1 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.810e-36
Identity = 79/163 (48.47%), Postives = 106/163 (65.03%), Query Frame = 1 
Query:   94 STAMFFDFGKKK-TSDVNARPVAGGTVKGGKKTKIVQEVS---PELQRQREAAQKKVVARKATKKTE--GVFTPPQFEAFKKARKEVPSGSGDEYWQKIAAKVPGQNAAACKRVAESMLFEAAVGSKSNYFGGYIEVKETPDYVDPEADIMFKINKLFGRTKK 564
            ST M F  G  K TS  ++RP AG T KG KKT +  + S   P ++R+R+A  + + A+KA +K    GVF+P Q+E F  AR  VPSG+ + YWQ+IA KVPGQNA  CK++A  +LFE A G+K N+FGGY+E  E  DYVD +AD+M K+  +F   KK
Sbjct:   43 STQMVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKA--QAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202
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BLAST of mRNA_M-pyrifera_M_contig13276.5899.1 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.790e-33
Identity = 74/151 (49.01%), Postives = 100/151 (66.23%), Query Frame = 1 
Query:  103 MFFDFGKKK-TSDVNARPVAGGTVKGGKKTKIVQEVS---PELQRQREAAQKKVVARKATKKTE--GVFTPPQFEAFKKARKEVPSGSGDEYWQKIAAKVPGQNAAACKRVAESMLFEAAVGSKSNYFGGYIEVKETPDYVDPEADIMFKI 537
            M F  G  K TS  ++RP AG T KG KKT +  + S   P ++R+R+A  + + A+KA +K    GVF+P Q+E F  AR  VPSG+ + YWQ+IA KVPGQNA  CK++A  +LFE A G+K N+FGGY+E  E  DYVD +AD+M K+
Sbjct:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKA--QAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 148
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BLAST of mRNA_M-pyrifera_M_contig13276.5899.1 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.740e-21
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 1 
Query:  154 VAGGTVKGGKKTKIVQEVSPELQRQREAAQKKVVARKATKKTEGVFTPPQFEAFKKARKEVPSGSGDEYWQKIAAKVPGQNAAACKRVAESMLFEAAVGSKSNYFGGYIEVKETPDYVDPEADIMFKINKLFG 552
            +A G   GG K   V     +L R +EA  K+  AR    K EG FT  Q +A + AR+EVPS S   YWQKIA+KVPGQ A  CK +   +L + A G+  N+FGGY+EVKET   VD EA +  ++   FG
Sbjct:   89 IAAGITPGGPK---VPSFPFKLGRTKEA--KEATARVVNGKLEGYFTNEQLQALEVARREVPS-SAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFG 215
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BLAST of mRNA_M-pyrifera_M_contig13276.5899.1 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 4.900e-13
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:  286 VFTPPQFEAFKKARKEVPSGSGDEYWQKIAAKV-PGQNAAACKRVAESMLFEAAVGSKSNYFGGYIEVKET---PDYVDPEA-DIMFKINKLFG 552
            VFT  Q   F +ARKE+PSGSGD YWQK+A +V  G  A  CKR+A++ LF+ A G+ SN+F  +++VK       YVD  A D M ++   +G
Sbjct:   91 VFTDKQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVESGYVDETAADPMTQMKNFWG 184
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13276.5899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSK3_ECTSI1.130e-7670.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZY5_9STRA4.810e-3648.47Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YSA5_9STRA2.790e-3349.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TIQ4_9STRA5.740e-2145.11Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2X777_9EUKA4.900e-1345.74Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13276contigM-pyrifera_M_contig13276:3015..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue2.5e-61
Seed eggNOG ortholog2880.D8LSK3
Hectar predicted targeting categoryother localisation
EggNOG OGs2D5NM@1,2SZ3Q@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001950.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size576
Cds size576
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13276.5899.1prot_M-pyrifera_M_contig13276.5899.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13276 3015..5156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.561538-CDS-M-pyrifera_M_contig13276:3014..32001622815812.561538-CDS-M-pyrifera_M_contig13276:3014..3200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13276 3015..3200 +
1692277582.7682807-CDS-M-pyrifera_M_contig13276:3014..32001692277582.7682807-CDS-M-pyrifera_M_contig13276:3014..3200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13276 3015..3200 +
1622815812.5731618-CDS-M-pyrifera_M_contig13276:4199..43161622815812.5731618-CDS-M-pyrifera_M_contig13276:4199..4316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13276 4200..4316 +
1692277582.7793012-CDS-M-pyrifera_M_contig13276:4199..43161692277582.7793012-CDS-M-pyrifera_M_contig13276:4199..4316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13276 4200..4316 +
1622815812.584293-CDS-M-pyrifera_M_contig13276:4883..51561622815812.584293-CDS-M-pyrifera_M_contig13276:4883..5156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13276 4884..5156 +
1692277582.7895548-CDS-M-pyrifera_M_contig13276:4883..51561692277582.7895548-CDS-M-pyrifera_M_contig13276:4883..5156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13276 4884..5156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13276.5899.1

>prot_M-pyrifera_M_contig13276.5899.1 ID=prot_M-pyrifera_M_contig13276.5899.1|Name=mRNA_M-pyrifera_M_contig13276.5899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
RPTAHIRRTIAETSASSWSPSSGIRRRNSATSTAMFFDFGKKKTSDVNAR
PVAGGTVKGGKKTKIVQEVSPELQRQREAAQKKVVARKATKKTEGVFTPP
QFEAFKKARKEVPSGSGDEYWQKIAAKVPGQNAAACKRVAESMLFEAAVG
SKSNYFGGYIEVKETPDYVDPEADIMFKINKLFGRTKKSAE*
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mRNA from alignment at M-pyrifera_M_contig13276:3015..5156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13276.5899.1 ID=mRNA_M-pyrifera_M_contig13276.5899.1|Name=mRNA_M-pyrifera_M_contig13276.5899.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2142bp|location=Sequence derived from alignment at M-pyrifera_M_contig13276:3015..5156+ (Macrocystis pyrifera P11B4 male)
CGACCGACCGCCCACATCCGGCGGACAATCGCCGAAACATCAGCATCGTC
GTGGTCGCCGTCGTCAGGGATTCGACGACGAAATTCGGCGACTTCGACCG
CGATGTTTTTCGACTTCGGAAAAAAAAAGACGAGCGACGTAAACGCGAGG
CCCGTCGCTGGAGGGACTGTGAAGGGAGGCAAGAAGGTGAGCGTGTAGCT
TTTGGACTTGGCTATTTCGTTTTTAACTCTTGTCTTTTTGTTCAAACGTT
ATCACACCTCGAACAGACAGATTATCTACTGATCATTCCCACATTCCCAC
TTGATGATCTAGATGTTTCTGGGCAGATAAATTTCTGATCTATGTGTTAT
GTATGATCTAGCTCACGTTACCGGGTGGGAGCCACATAATCTACTTGATC
TAGCACATGTTTCGTTGGGTTGAATATGTACGGTACATATCGTGTAACGC
ACCTCACAACGGCAGGTTAGTATCTAGATGATCTGTGGATGATCTATCTG
TAGATGATCTTGTAGATGATCTGTCCAACGTGGGAAACGTTACCGTTGTG
TACCCGCCCCGCGTCCCAACCTCAATAATGGACCAGCAAACAATGCGTGT
CACCTGATGTTTGTCTGCTCGACGTCACCCCCGCGCGCCCTGCAAACACC
TACAACAAGAGCTATCTACGCCTCTCAGCTCTCTACAGCAGATAAAAACA
TCCACCACAGCAAAAAGCAAGTATGTGTATATATTACGTACAAGTTACCT
TCCCGTCCTTGGTGTCTTCACCCGCCTGTGCCGCTCGCTGCACCGCAACT
GTACCACGGGATGAAAAAAAGAGGTTGTACTCTTGCGAGTGTTTCGAAAT
AATAGTCTACCCTTGGCCCGAAACTACGCAATACTACAGTAAACTCGCCA
CTTGACTATCTGATGAAGAACGATACGATGTGTCCTAGCTAACCGAATCG
CTGGTACTTCTGTTTTTTTTCGATATGGGCTCCGTGCTACGCGCTCCCCG
AACAATACCTAAGCTTGTACAATACGTACGCGGGTCACTCCCGTCCCACC
AGATGCTGGACTCCGATTGAGTCGTTTTACCCAATCCTCTCCCTTTAAAT
CGAACTGTTTTTACCCCGACCCCCGGGTTTCCACTTATTTTGTCCGACCT
CTGCCTTTTCCATCGGCGTGTTGCCCGGTTTCCAGACAAAAATAGTTCAG
GAGGTTAGCCCCGAGTTGCAGCGCCAGCGAGAAGCCGCACAGAAGAAAGT
CGTGGCTCGAAAGGCTACCAAGAAGACTGAGGGTGTCTTCACGCCGCCGC
AGGTTAGTCCGCGGAAAATGACCCCCCCCTTTTTAGCCGAACGGCGGCAT
CAGGTTGCACGAGCAGTAGAGTAGTAGCAGGAGTTAGAGTAGTAGAAGCA
GTAATAGTAGCAGTGGTGGCAGTACCAGTATAGTAGTCCTAGTATCAGTA
GTGGTAACAATAGTAGCACCGGGAATACCGGACACGTGTTCTAAAAACGA
GCGCTATGATAAGTCATGACTGACATGCCAATACTGCGAGAAAACCGGAA
CAAGTAAGGTATGACCCAAGCGCTCTCCCTCTCATGTTCAGCAGAAGCTA
CGAGTACCTCTATTTATGGCGGTGAAGGATGGAAAATCAACCGAAATTCG
TTTTTCGGTGGTCGTTTTCCTCTTTTCGCTTTTTGTCCTTCGGTGTTTTC
GGTTTCGTTCTTCGTGCTTCATCATTCACTTTTTTTTGTACGCTACAGTA
GTAGTACGCACATCTATACACGTCGCGTATGATCTGACCAGTCCCCCTAC
TCCTCGCCCGCCCAACCCTCTTCTCCTCTCCTTAACGACGATGATGGACG
GGCATACAACCAAGAACAGTTCGAAGCCTTCAAGAAAGCGCGAAAAGAGG
TTCCCTCAGGCAGCGGCGACGAATACTGGCAGAAGATAGCCGCCAAGGTG
CCGGGACAGAACGCGGCGGCCTGCAAGCGAGTGGCGGAGTCGATGCTGTT
CGAGGCCGCGGTGGGCTCGAAGAGCAACTACTTCGGCGGTTACATCGAGG
TCAAAGAGACCCCGGACTACGTCGACCCGGAGGCGGACATCATGTTCAAG
ATCAACAAATTGTTTGGCCGGACAAAGAAGAGCGCGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13276:3015..5156+

>mRNA_M-pyrifera_M_contig13276.5899.1 ID=mRNA_M-pyrifera_M_contig13276.5899.1|Name=mRNA_M-pyrifera_M_contig13276.5899.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig13276:3015..5156+ (Macrocystis pyrifera P11B4 male)
CGACCGACCGCCCACATCCGGCGGACAATCGCCGAAACATCAGCATCGTC
GTGGTCGCCGTCGTCAGGGATTCGACGACGAAATTCGGCGACTTCGACCG
CGATGTTTTTCGACTTCGGAAAAAAAAAGACGAGCGACGTAAACGCGAGG
CCCGTCGCTGGAGGGACTGTGAAGGGAGGCAAGAAGCGACCGACCGCCCA
CATCCGGCGGACAATCGCCGAAACATCAGCATCGTCGTGGTCGCCGTCGT
CAGGGATTCGACGACGAAATTCGGCGACTTCGACCGCGATGTTTTTCGAC
TTCGGAAAAAAAAAGACGAGCGACGTAAACGCGAGGCCCGTCGCTGGAGG
GACTGTGAAGGGAGGCAAGAAGACAAAAATAGTTCAGGAGGTTAGCCCCG
AGTTGCAGCGCCAGCGAGAAGCCGCACAGAAGAAAGTCGTGGCTCGAAAG
GCTACCAAGAAGACTGAGGGTGTCTTCACGCCGCCGCAGACAAAAATAGT
TCAGGAGGTTAGCCCCGAGTTGCAGCGCCAGCGAGAAGCCGCACAGAAGA
AAGTCGTGGCTCGAAAGGCTACCAAGAAGACTGAGGGTGTCTTCACGCCG
CCGCAGTTCGAAGCCTTCAAGAAAGCGCGAAAAGAGGTTCCCTCAGGCAG
CGGCGACGAATACTGGCAGAAGATAGCCGCCAAGGTGCCGGGACAGAACG
CGGCGGCCTGCAAGCGAGTGGCGGAGTCGATGCTGTTCGAGGCCGCGGTG
GGCTCGAAGAGCAACTACTTCGGCGGTTACATCGAGGTCAAAGAGACCCC
GGACTACGTCGACCCGGAGGCGGACATCATGTTCAAGATCAACAAATTGT
TTGGCCGGACAAAGAAGAGCGCGGAATAGTTCGAAGCCTTCAAGAAAGCG
CGAAAAGAGGTTCCCTCAGGCAGCGGCGACGAATACTGGCAGAAGATAGC
CGCCAAGGTGCCGGGACAGAACGCGGCGGCCTGCAAGCGAGTGGCGGAGT
CGATGCTGTTCGAGGCCGCGGTGGGCTCGAAGAGCAACTACTTCGGCGGT
TACATCGAGGTCAAAGAGACCCCGGACTACGTCGACCCGGAGGCGGACAT
CATGTTCAAGATCAACAAATTGTTTGGCCGGACAAAGAAGAGCGCGGAAT
AG
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