mRNA_M-pyrifera_M_contig13248.5893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13248.5893.1
Unique NamemRNA_M-pyrifera_M_contig13248.5893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: D7G6Y6_ECTSI (SpoU_methylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 7.520e-55
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1
Query:    1 VSDPSTYSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSVKTAVVLGNEERGISDSMRNMADATFVIPMR 291
            VSDPSTYSK+ARL+TMCTAMGSQKWLTLHGHD PEDAVAKLK DGYQVVASDLSPSAVPI +IDWSV TAVVLGNEERGISDSMR+MADATFVIPMR
Sbjct:  185 VSDPSTYSKQARLKTMCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNEERGISDSMRDMADATFVIPMR 281          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A836C8H0_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.110e-28
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 VSDPSTYSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSVK-TAVVLGNEERGISDSMRNMADATFVIPMR 291
            ++DP  Y KK RL TM +AMGSQKWL+LHGHDS  D    LK  GY+++ S L P AVP+  IDWS +  AV  GNE+ G+S+ +    D TF IPMR
Sbjct:   79 IADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMR 176          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A7S2KIJ5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KIJ5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.500e-23
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    7 DPSTYSKKARL---QTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSVKTAVVLGNEERGISDSMRNMADATFVIPM 288
            D S Y K   L   Q M +AMGS  W+TL  H S EDAV +LK  GY++ ASDL+PS+  + ++DW     VV+GNE+RGIS  MR +AD TF +PM
Sbjct:   35 DSSKYDKPMALIQKQGMRSAMGSAHWITLTNHLSTEDAVKQLKGQGYRIFASDLNPSSKDVRELDWDWPICVVMGNEDRGISQEMRELADETFTLPM 131          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A7S2A9L6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9L6_TRICV)

HSP 1 Score: 101 bits (251), Expect = 2.830e-23
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 VSDPSTYSKKARLQT---MCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSV-KTAVVLGNEERGISDSMRNMADATFVIPM 288
            V D   Y  K  +Q    M TAMGS KWL+L  H S E+AV  +K +GY++ ASDL+P++  + ++DW V    VV+GNEERGISD MR MAD TF +PM
Sbjct:  233 VVDSGMYKGKMAVQQKRGMRTAMGSAKWLSLRNHPSTEEAVRAIKAEGYKIYASDLNPNSQDVREVDWDVGPVCVVMGNEERGISDEMREMADVTFTLPM 332          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A4D9CY40_9STRA (SpoU_methylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY40_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.530e-22
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 DPSTYSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSP--SAVPIGKIDWSV-KTAVVLGNEERGISDSMRNMADATFVIPM 288
            D + Y K  RL    +AMGSQKWLT+  H S    VA LK +GY V+ASDL P  S  P+ ++ W+  K A+V+GNEERGI++ MR++ D TF IPM
Sbjct:   77 DTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVKWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPM 173          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: W7UA00_9STRA (Trna rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA00_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.140e-22
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    7 DPSTYSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSP--SAVPIGKIDWSV-KTAVVLGNEERGISDSMRNMADATFVIPM 288
            D + Y K  RL    +AMGSQKWLT+  H S    VA LK +GY V+ASDL P  S  P+ +++W+  K A+V+GNEERGI++ MR++ D TF IPM
Sbjct:  218 DTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPM 314          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A7S0BXI4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BXI4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.640e-21
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 VSDPSTYSKKARLQT---MCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSV-----KTAVVLGNEERGISDSMRNMADATFVIPM 288
            V D S Y+ KA L     M +AMGS  WLT+  H S  +A+ KLKE+GY + ASDL+P +V I  + W       K  VV+GNE +GISD MR + D TF IPM
Sbjct:  224 VVDSSQYNGKAMLNAKRGMRSAMGSASWLTIQNHPSTLEAITKLKEEGYTIYASDLTPDSVDIRDLKWDSDDGRQKVCVVMGNEMKGISDEMRGLVDGTFTIPM 327          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A0G4HU07_9ALVE (SpoU_methylase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HU07_9ALVE)

HSP 1 Score: 92.4 bits (228), Expect = 8.000e-20
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   19 YSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSVKTAVVLGNEERGISDSMRNMADATFVIPMR 291
            YS++     M  A+GS KWL+L  H++    V +LKE+GY+V ASDLS SAV +  +D S   AVV+G+E +GI+D MR  ADATF IPM+
Sbjct:  356 YSRRNLRGAMTAALGSSKWLSLRQHETTMGCVERLKEEGYRVYASDLSESAVCLSDLDISRPFAVVMGSELKGITDEMRQAADATFFIPMK 446          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A8J2SJW7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJW7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.590e-19
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    7 DPSTYSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDW-SVKTAVVLGNEERGISDSMRNMADATFVIPMR 291
            DP T   + R + M +AMG+QKWL+L  H   +  V+KLK +G  V A+DLSP AV   ++DW S K A+V GNEE GISD +R +AD    +PMR
Sbjct:  151 DP-TQRMRGRKKRMTSAMGAQKWLSLEAHADAQALVSKLKSEGRIVAATDLSPGAVDFSEVDWASGKHALVFGNEEVGISDELRELADVRVRLPMR 245          
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Match: A0A7S1Y6X6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.030e-18
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   52 TAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVASDLSPSAVPIGKIDWSVK----TAVVLGNEERGISDSMRNMADATFVIPM 288
            TAMGS +WL+L  H +   AVAKLK +GY++ ASDL+P++  +  +DWS        +V+GNE RGIS  MR +AD TF +PM
Sbjct:  219 TAMGSAQWLSLTNHPTTASAVAKLKSEGYKLYASDLNPNSKDVRDVDWSADGDRPICIVMGNEGRGISQEMRELADETFTLPM 301          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13248.5893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y6_ECTSI7.520e-5591.75SpoU_methylase domain-containing protein n=2 Tax=E... [more]
A0A836C8H0_9STRA3.110e-2853.06Alpha/beta knot methyltransferase n=1 Tax=Tribonem... [more]
A0A7S2KIJ5_9STRA2.500e-2350.52Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2A9L6_TRICV2.830e-2351.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A4D9CY40_9STRA2.530e-2250.52SpoU_methylase domain-containing protein n=2 Tax=M... [more]
W7UA00_9STRA9.140e-2250.52Trna rrna methyltransferase n=1 Tax=Nannochloropsi... [more]
A0A7S0BXI4_9STRA5.640e-2148.08Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A0G4HU07_9ALVE8.000e-2050.55SpoU_methylase domain-containing protein n=1 Tax=C... [more]
A0A8J2SJW7_9STRA1.590e-1948.96Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1Y6X6_9STRA2.030e-1849.40Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13248contigM-pyrifera_M_contig13248:6800..8114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue2.6e-43
Seed eggNOG ortholog2880.D7G6Y6
KEGG koko:K00556
Hectar predicted targeting categoryother localisation
EggNOG free text desc.rRNA methyltransferase
EggNOG OGsCOG0566@1,KOG0838@2759
EC2.1.1.34
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons3
Model size294
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13248.5893.1prot_M-pyrifera_M_contig13248.5893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13248 6801..8114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.0797966-CDS-M-pyrifera_M_contig13248:6800..69501622815812.0797966-CDS-M-pyrifera_M_contig13248:6800..6950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 6801..6950 -
1692277582.5004048-CDS-M-pyrifera_M_contig13248:6800..69501692277582.5004048-CDS-M-pyrifera_M_contig13248:6800..6950Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 6801..6950 -
1622815812.0908365-CDS-M-pyrifera_M_contig13248:7597..76731622815812.0908365-CDS-M-pyrifera_M_contig13248:7597..7673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 7598..7673 -
1692277582.5102232-CDS-M-pyrifera_M_contig13248:7597..76731692277582.5102232-CDS-M-pyrifera_M_contig13248:7597..7673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 7598..7673 -
1622815812.1004472-CDS-M-pyrifera_M_contig13248:8049..81141622815812.1004472-CDS-M-pyrifera_M_contig13248:8049..8114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 8050..8114 -
1692277582.5182836-CDS-M-pyrifera_M_contig13248:8049..81141692277582.5182836-CDS-M-pyrifera_M_contig13248:8049..8114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 8050..8114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13248.5893.1

>prot_M-pyrifera_M_contig13248.5893.1 ID=prot_M-pyrifera_M_contig13248.5893.1|Name=mRNA_M-pyrifera_M_contig13248.5893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
VSDPSTYSKKARLQTMCTAMGSQKWLTLHGHDSPEDAVAKLKEDGYQVVA
SDLSPSAVPIGKIDWSVKTAVVLGNEERGISDSMRNMADATFVIPMR
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mRNA from alignment at M-pyrifera_M_contig13248:6800..8114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13248.5893.1 ID=mRNA_M-pyrifera_M_contig13248.5893.1|Name=mRNA_M-pyrifera_M_contig13248.5893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1315bp|location=Sequence derived from alignment at M-pyrifera_M_contig13248:6800..8114- (Macrocystis pyrifera P11B4 male)
GTGTCCGATCCGTCCACGTACTCCAAGAAGGCCAGGCTCCAGACCATGTG CACCGCTATGGGCAGGTGATTAATTTACGGGTGCGGGGTCTTGAAGTTGA CACACAAAAACGTGCCGACTACGTTGTTGACGTGTCACTGCTGAAAATGT GTGTGATGCGGCGCCAGCGGGGTACGCAGCGTTCAGTTGTTCTGTGTCGA ATCGGTCCCCACGATGAAACGCCAACGAGCAGTAACATCCCTTACCATCA TGATGCAGTAACAGGTAGGGGGTTTCCGCGTCGCCCAGGACCATTTACAA CCTACGGCCCGCCCATGGTGCGTTTTTCAGTCTTCACATGACCTTAAAAA ACGTACAATCGGGATTGCTCCTTTCGAACCTCCCACCCTAATATACCTGG GACCTGTAATTGTTTGGTGTTCTGCCGTTTTGCCATCTTAGCCAGAAATG GCTTACTCTTCATGGCCACGATAGCCCGGAGGATGCCGTGGCAAAACTGA AGGAGGACGGGTATCAGGTGAGCCACTCCAGCTGATCTTGCCGCCCGCGC AGCATCACCTCTGCACGCACATATGTGGTGGGTATTTTTTCTTGGAGATG TTCCCACTTTTTTGTAGACCTACGCGTTCGGCAGGTAGACTAGAGTGTAA CGCGCTTTTTATCCCATGGCGTATGGCAGCATTTTTCGTGGTTCGTTTTG ATCCCAACAAGTTTCCCCCATGCTACCGTTGTGTTGCTGGTTGCCGTCGA ATGCATGGCTACGCACATGCTGCATGTACGCATTGCACATGGCCTTACTT CTCGTGTTTTAGCGCTAAAAGGCTCCGCGTTATTCTAGGTGCACTCCCTT CACCCGAGCGAAGAAATTACTCCTTCGGTAGTACGGAAGTAGCAACAAGG CTAGGATAGCCGATTGCATCTATGTACATTGTGGGTGCACAATGCGGTGG CATATCTGGAGAGCTGTGTTTTTGTCGCGCTTCGTCCCCAAAATAATCGA CTCATTGTTTCCCCCCTCGCCAAGGCACCGTCGGTTGGGACAGCGGTCTA CCCCGTACTATCCATGTACGAAATATCTTCGAGCAGGCAAAGTGTCGTAC AACCGTACATTTATATTATTTAACCATCACTTGTGTGTCGTAAACCACAA CAAATGGCGGCCAGGTGGTAGCGAGCGACCTCTCCCCATCCGCCGTTCCC ATCGGGAAGATAGACTGGTCCGTAAAGACAGCGGTGGTGCTGGGGAATGA GGAGCGAGGGATATCGGATTCGATGCGGAATATGGCGGACGCAACTTTCG TGATTCCGATGAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13248:6800..8114-

>mRNA_M-pyrifera_M_contig13248.5893.1 ID=mRNA_M-pyrifera_M_contig13248.5893.1|Name=mRNA_M-pyrifera_M_contig13248.5893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig13248:6800..8114- (Macrocystis pyrifera P11B4 male)
GTGTCCGATCCGTCCACGTACTCCAAGAAGGCCAGGCTCCAGACCATGTG
CACCGCTATGGGCAGGTGTCCGATCCGTCCACGTACTCCAAGAAGGCCAG
GCTCCAGACCATGTGCACCGCTATGGGCAGCCAGAAATGGCTTACTCTTC
ATGGCCACGATAGCCCGGAGGATGCCGTGGCAAAACTGAAGGAGGACGGG
TATCAGCCAGAAATGGCTTACTCTTCATGGCCACGATAGCCCGGAGGATG
CCGTGGCAAAACTGAAGGAGGACGGGTATCAGGTGGTAGCGAGCGACCTC
TCCCCATCCGCCGTTCCCATCGGGAAGATAGACTGGTCCGTAAAGACAGC
GGTGGTGCTGGGGAATGAGGAGCGAGGGATATCGGATTCGATGCGGAATA
TGGCGGACGCAACTTTCGTGATTCCGATGAGAGTGGTAGCGAGCGACCTC
TCCCCATCCGCCGTTCCCATCGGGAAGATAGACTGGTCCGTAAAGACAGC
GGTGGTGCTGGGGAATGAGGAGCGAGGGATATCGGATTCGATGCGGAATA
TGGCGGACGCAACTTTCGTGATTCCGATGAGA
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