mRNA_M-pyrifera_M_contig102722.586.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102722.586.1
Unique NamemRNA_M-pyrifera_M_contig102722.586.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: D0MTJ4_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MTJ4_PHYIT)

HSP 1 Score: 66.2 bits (160), Expect = 2.280e-11
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   10 VGVWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            VG  G+ C ++  CSGHGTC   S +C C +GWGA TD+A +K+PDCS R
Sbjct:  543 VGAGGEGCTYVNDCSGHGTCTLLSKICICNTGWGAPTDVADYKSPDCSTR 592
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A329SGS0_9STRA (EGF-like domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGS0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.840e-11
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            + G+ C ++  CSGHGTC   S VC C SGWGA TD+A +K+PDCS R
Sbjct:  553 IGGEGCTYVNDCSGHGTCTLLSKVCICNSGWGAPTDVADYKSPDCSTR 600
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: G4Z207_PHYSP (EGF-like domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z207_PHYSP)

HSP 1 Score: 64.7 bits (156), Expect = 7.990e-11
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            + G+ C ++  CSGHGTC   S VC C +GWGA TDIA +K+PDCS R
Sbjct:  533 IGGEGCTYINDCSGHGTCTLLSKVCICDTGWGAPTDIADYKSPDCSTR 580
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A833W939_PHYIN (EGF-like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W939_PHYIN)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            V G+ C ++  CSGHGTC   S +C C +GWGA TD+A +K+PDCS R
Sbjct:  550 VGGEGCTYVNDCSGHGTCTLLSKICICNTGWGAPTDVADYKSPDCSTR 597
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A6A3N5S9_9STRA (EGF-like domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N5S9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            + G+ C ++  CSGHGTC   S VC C  GWGA TDIA +K+PDCS R
Sbjct:  549 IGGEGCTYINDCSGHGTCTLLSKVCICDIGWGAPTDIADYKSPDCSTR 596
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A8K1C6E0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6E0_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 3.810e-10
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   22 GQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            G+ C +L  C+GHGTC   S  C C SGWGA TDIA ++APDC++R
Sbjct:  548 GEGCPYLNDCNGHGTCTLFSWTCMCESGWGALTDIADYRAPDCTMR 593
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A662XFW1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XFW1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.110e-10
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            + G+ C ++  C+GHGTC   S  C C SGWGA TD+ T+++PDCS R
Sbjct:  495 IGGEGCTYVNDCNGHGTCTLLSKACICDSGWGAPTDVTTYRSPDCSTR 542
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A6G0XBL7_9STRA (EGF-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBL7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.110e-10
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            V G+ C  L +CSGHG C   S  C C  GWGA++DIA +KAPDCS R
Sbjct:  402 VGGEGCAELNECSGHGDCTLMSKTCLCYPGWGAASDIAEYKAPDCSQR 449
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BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A2D4C9C9_PYTIN (EGF-like domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9C9_PYTIN)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-9
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   16 VWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            + G+ C  L  C+GHGTC   S  C C +GWGA TD+A +K+PDC++R
Sbjct:  559 ISGEGCTFLNNCNGHGTCTLFSKTCICDTGWGAPTDVANYKSPDCTLR 606
[Close]
BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Match: A0A5A8D842_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D842_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   31 CEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDCSVR 159
            C HL  C+ HGTCD  + VC C  G+G+ +D+A +KAPDCS R
Sbjct:   22 CAHLNNCNSHGTCDETNRVCRCFDGFGSESDLAVYKAPDCSQR 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102722.586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D0MTJ4_PHYIT2.280e-1154.00Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A329SGS0_9STRA5.840e-1156.25EGF-like domain-containing protein n=1 Tax=Phytoph... [more]
G4Z207_PHYSP7.990e-1156.25EGF-like domain-containing protein n=1 Tax=Phytoph... [more]
A0A833W939_PHYIN1.490e-1054.17EGF-like domain n=1 Tax=Phytophthora infestans Tax... [more]
A0A6A3N5S9_9STRA2.040e-1056.25EGF-like domain-containing protein n=3 Tax=Phytoph... [more]
A0A8K1C6E0_PYTOL3.810e-1056.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XFW1_9STRA7.110e-1050.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6G0XBL7_9STRA7.110e-1056.25EGF-like domain-containing protein n=1 Tax=Aphanom... [more]
A0A2D4C9C9_PYTIN1.820e-950.00EGF-like domain-containing protein n=1 Tax=Pythium... [more]
A0A5A8D842_CAFRO2.000e-953.49Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102722contigM-pyrifera_M_contig102722:359..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog4787.PITG_01563T0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2ECCR@1,2SI8Y@2759,3QA1V@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.3302813-CDS-M-pyrifera_M_contig102722:358..5171622815531.3302813-CDS-M-pyrifera_M_contig102722:358..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102722 359..517 +
1692277451.6617174-CDS-M-pyrifera_M_contig102722:358..5171692277451.6617174-CDS-M-pyrifera_M_contig102722:358..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102722 359..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102722.586.1prot_M-pyrifera_M_contig102722.586.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102722 359..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102722.586.1

>prot_M-pyrifera_M_contig102722.586.1 ID=prot_M-pyrifera_M_contig102722.586.1|Name=mRNA_M-pyrifera_M_contig102722.586.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MWVVGVWGQDCEHLAQCSGHGTCDGDSLVCNCISGWGASTDIATFKAPDC
SVR
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mRNA from alignment at M-pyrifera_M_contig102722:359..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102722.586.1 ID=mRNA_M-pyrifera_M_contig102722.586.1|Name=mRNA_M-pyrifera_M_contig102722.586.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig102722:359..517+ (Macrocystis pyrifera P11B4 male)
ATGTGGGTTGTGGGAGTGTGGGGGCAGGATTGTGAACATCTAGCACAGTG
TTCTGGGCATGGAACTTGCGATGGCGATTCTTTAGTCTGCAATTGCATCT
CTGGGTGGGGTGCTTCTACCGATATTGCAACCTTCAAAGCTCCTGACTGT
TCTGTTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102722:359..517+

>mRNA_M-pyrifera_M_contig102722.586.1 ID=mRNA_M-pyrifera_M_contig102722.586.1|Name=mRNA_M-pyrifera_M_contig102722.586.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig102722:359..517+ (Macrocystis pyrifera P11B4 male)
ATGTGGGTTGTGGGAGTGTGGGGGCAGGATTGTGAACATCTAGCACAGTG
TTCTGGGCATGGAACTTGCGATGGCGATTCTTTAGTCTGCAATTGCATCT
CTGGGTGGGGTGCTTCTACCGATATTGCAACCTTCAAAGCTCCTGACTGT
TCTGTTCGTATGTGGGTTGTGGGAGTGTGGGGGCAGGATTGTGAACATCT
AGCACAGTGTTCTGGGCATGGAACTTGCGATGGCGATTCTTTAGTCTGCA
ATTGCATCTCTGGGTGGGGTGCTTCTACCGATATTGCAACCTTCAAAGCT
CCTGACTGTTCTGTTCGT
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