mRNA_M-pyrifera_M_contig1306.5830.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1306.5830.1
Unique NamemRNA_M-pyrifera_M_contig1306.5830.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: D8LJR2_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.130e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MSIAPISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK 117
            MSIAP+SQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK
Sbjct:    1 MSIAPVSQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK 39
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A835YW81_9STRA (Coatomer protein complex, gamma sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW81_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.060e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MSIAPISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK 117
            MSIAPIS FFILSPRGDTIISKDYRGD V G TD FFRK
Sbjct:    1 MSIAPISHFFILSPRGDTIISKDYRGDVVPGGTDIFFRK 39
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A7S1C3I7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3I7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.140e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    7 IAPISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK 117
            +A I QFFILSPRGDTIISK YRGD VAGT++ FFRK
Sbjct:   41 VAMIGQFFILSPRGDTIISKQYRGDVVAGTSEIFFRK 77
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A5A8EE88_CAFRO (MHD domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EE88_CAFRO)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-9
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKA 120
            ISQ F+LSPRGDTIIS++YRGDAV GT++ FFRKA
Sbjct:    2 ISQLFVLSPRGDTIISREYRGDAVKGTSEIFFRKA 36
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A7S3MBD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBD4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.110e-9
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK 117
            I QFFILSPRGDTII+KD+RGDA+ G  D FFRK
Sbjct:   20 IGQFFILSPRGDTIINKDFRGDAIPGQQDLFFRK 53
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A7J6PAW8_PEROL (AP-4 complex subunit mu-1 n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PAW8_PEROL)

HSP 1 Score: 58.2 bits (139), Expect = 9.040e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKA 120
            +SQF+ILSPRGDTII++D+RGD V GT + FFRKA
Sbjct:   10 VSQFYILSPRGDTIITRDFRGDIVKGTAEIFFRKA 44
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: C5LK26_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LK26_PERM5)

HSP 1 Score: 58.2 bits (139), Expect = 9.060e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKA 120
            +SQF+ILSPRGDTII++D+RGD V GT + FFRKA
Sbjct:   10 VSQFYILSPRGDTIITRDFRGDIVKGTAEIFFRKA 44
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A7J6RI43_PEROL (AP-4 complex subunit mu-1 n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RI43_PEROL)

HSP 1 Score: 58.2 bits (139), Expect = 9.090e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKA 120
            +SQF+ILSPRGDTII++D+RGD V GT + FFRKA
Sbjct:   10 VSQFYILSPRGDTIITRDFRGDIVKGTAEIFFRKA 44
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A7J6MGK3_PEROL (AP-4 complex subunit mu-1 n=3 Tax=Perkinsus TaxID=28000 RepID=A0A7J6MGK3_PEROL)

HSP 1 Score: 58.2 bits (139), Expect = 9.090e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   16 ISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKA 120
            +SQF+ILSPRGDTII++D+RGD V GT + FFRKA
Sbjct:   10 VSQFYILSPRGDTIITRDFRGDIVKGTAEIFFRKA 44
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BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Match: A0A0L0DR67_THETB (Adaptor complexes medium subunit family protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DR67_THETB)

HSP 1 Score: 57.4 bits (137), Expect = 1.700e-8
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    7 IAPISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRK 117
            +A  SQFF+LS RGDTI+SKDYRGD V GT D F+RK
Sbjct:    1 MAAFSQFFVLSGRGDTIVSKDYRGDVVKGTPDIFWRK 37
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1306.5830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR2_ECTSI1.130e-1697.44Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A835YW81_9STRA4.060e-1387.18Coatomer protein complex, gamma sub-unit n=1 Tax=T... [more]
A0A7S1C3I7_9STRA2.140e-1078.38Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8EE88_CAFRO1.390e-977.14MHD domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A7S3MBD4_9STRA6.110e-976.47Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7J6PAW8_PEROL9.040e-971.43AP-4 complex subunit mu-1 n=5 Tax=Perkinsus olseni... [more]
C5LK26_PERM59.060e-971.43Uncharacterized protein n=1 Tax=Perkinsus marinus ... [more]
A0A7J6RI43_PEROL9.090e-971.43AP-4 complex subunit mu-1 n=3 Tax=Perkinsus olseni... [more]
A0A7J6MGK3_PEROL9.090e-971.43AP-4 complex subunit mu-1 n=3 Tax=Perkinsus TaxID=... [more]
A0A0L0DR67_THETB1.700e-870.27Adaptor complexes medium subunit family protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1306contigM-pyrifera_M_contig1306:7391..7510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D8LJR2
KEGG koko:K12402
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006622,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019904,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090160,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1903361,GO:1990778
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0937@1,KOG0937@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size121
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.2700589-CDS-M-pyrifera_M_contig1306:7390..75101622815806.2700589-CDS-M-pyrifera_M_contig1306:7390..7510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1306 7391..7510 +
1692277579.0259986-CDS-M-pyrifera_M_contig1306:7390..75101692277579.0259986-CDS-M-pyrifera_M_contig1306:7390..7510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1306 7391..7510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1306.5830.1prot_M-pyrifera_M_contig1306.5830.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1306 7391..7510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1306.5830.1

>prot_M-pyrifera_M_contig1306.5830.1 ID=prot_M-pyrifera_M_contig1306.5830.1|Name=mRNA_M-pyrifera_M_contig1306.5830.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MSIAPISQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKA
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mRNA from alignment at M-pyrifera_M_contig1306:7391..7510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1306.5830.1 ID=mRNA_M-pyrifera_M_contig1306.5830.1|Name=mRNA_M-pyrifera_M_contig1306.5830.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig1306:7391..7510+ (Macrocystis pyrifera P11B4 male)
ATGTCGATTGCTCCCATCTCCCAGTTCTTTATCCTCTCGCCTCGTGGAGA
CACCATCATCTCCAAGGACTACCGTGGCGATGCTGTCGCCGGAACGACGG
ACACCTTCTTCCGAAAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1306:7391..7510+

>mRNA_M-pyrifera_M_contig1306.5830.1 ID=mRNA_M-pyrifera_M_contig1306.5830.1|Name=mRNA_M-pyrifera_M_contig1306.5830.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig1306:7391..7510+ (Macrocystis pyrifera P11B4 male)
ATGTCGATTGCTCCCATCTCCCAGTTCTTTATCCTCTCGCCTCGTGGAGA
CACCATCATCTCCAAGGACTACCGTGGCGATGCTGTCGCCGGAACGACGG
ACACCTTCTTCCGAAAGGCGATGTCGATTGCTCCCATCTCCCAGTTCTTT
ATCCTCTCGCCTCGTGGAGACACCATCATCTCCAAGGACTACCGTGGCGA
TGCTGTCGCCGGAACGACGGACACCTTCTTCCGAAAGGCG
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