mRNA_M-pyrifera_M_contig13003.5818.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13003.5818.1
Unique NamemRNA_M-pyrifera_M_contig13003.5818.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.650e-44
Identity = 85/152 (55.92%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVLLSTI 456
            LGV NN+D ++  IELD RE Y      GY VV L+Y P R+ +YI +AD AGL LDGL RGVI   PV RKF+IV   ++KFT  R Q+PL+ G LSSVYR+QG+T+PK++LDIR+P    +D AAVYVALSRAT    L LL PV L  +
Sbjct:  148 LGVCNNSDGIIRGIELDPREGYAS-STAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLLFPVTLQDL 298          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.120e-42
Identity = 85/152 (55.92%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVLLSTI 456
            LGV NN+D ++  IELD RE Y      GY VV L+Y P R+ +YI +AD AGL LDGL RGVI   PV RKF+IV   ++KFT  R Q+PL+ G LSSVYR+QG+T+PK++LDIR+P    +D AAVYVALSRAT    L LL PV L  +
Sbjct: 1855 LGVCNNSDGIIRGIELDPREGYAS-STAGYSVVTLRYAPLRIFVYIKSADAAGLHLDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLLFPVTLQDL 2005          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.770e-27
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKP 354
            LGV NN+D ++  IELD  E +      GY VV L+Y P +V +YI  AD AGL L+GL RGV+   PV ++ +I   G+ KF   R Q+PL  G +SSV+R+QG+T+PK++LDI  P
Sbjct:  627 LGVCNNSDGIIRGIELDPLEDFLLDPTPGYSVVNLRYAPLQVFVYIKTADDAGLHLEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPP 744          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A2R6NF34_9APHY (ATP-dependent DNA helicase n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NF34_9APHY)

HSP 1 Score: 74.7 bits (182), Expect = 1.020e-12
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSI-VDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 432
            L +TN A   +  I L   E     +V    VV+L   P  +L+ ++    +   L+GL   VI   PV + FSI  +  ++K T+ R+Q P++     + YR+QG+TIP +V+DI KP  G +    VYVALSR++    + LL
Sbjct:  682 LDITNGARGTITGIGLHPEEN----EVPNERVVQLSRTPVYILVKLERTKMS--PLEGLEESVIPIVPVVKSFSIEAEAEKRKKTVRRLQFPMTEAYAFTDYRSQGQTIPYVVVDIAKPPSGSLTLFNVYVALSRSSGRHTIRLL 820          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A8H8MJZ9_9AGAM (ATP-dependent DNA helicase n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MJZ9_9AGAM)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-12
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVD-GYMDSAAVYVALSRATDASKLFLL 432
            L + N +  VVVD+ LD RE   +        V L+YPP  VL+ +D    A  K+DGL   VI   P  R+F I  K  +     R Q+P++     + YR+QG+TI K+++DI  P   G M  +++YV+ SR+     + LL
Sbjct: 1155 LDIANGSRGVVVDLILDHREG--QEAAAEVSEVHLKYPPACVLVQLDRTKAA--KIDGLGERVIPIFPRVRRFDIPQKKGKVLHAKRRQIPITSAYAFTDYRSQGQTISKVIVDIANPPPPGRMTLSSIYVSFSRSFGRKTIRLL 1295          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A146HLB2_MYCCL (ATP-dependent DNA helicase n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HLB2_MYCCL)

HSP 1 Score: 74.3 bits (181), Expect = 1.470e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    7 VTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRA 405
            + N    V+VDI+LD +EPY  + +     V L+YPP  VL   + +        G+  GVI   P    F+I    ++  TI R Q  ++ G   + Y++QG+TI ++++D+  P  G +   +VYVALSR+
Sbjct: 1651 LANGTRGVIVDIKLDPKEPY-DLNIDEDGRVHLRYPPAAVLFRPNTSSFG--TFPGMEEGVIPILPSTGTFTIPTNVQKSLTIKRRQFAMTPGYAFTDYKSQGQTIERVIIDLADPPSGKLTPFSVYVALSRS 1780          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A066V913_9AGAM (ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066V913_9AGAM)

HSP 1 Score: 74.3 bits (181), Expect = 1.470e-12
Identity = 49/147 (33.33%), Postives = 77/147 (52.38%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRI---KVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 432
            L V N A  VV  I  D RE +  +   + TG   + L YPP  VL+ +     +   ++GL  GV+   P+ RK+ I  K  +   + R Q+P++     + YR+QG+TI K+++DI +P  G +     YVALSR++    + LL
Sbjct: 1653 LDVANGARGVVERIIFDRREEFPAMVASESTGPTEMSLTYPPECVLVRLYRTKAS--TIEGLGPGVVPIFPMTRKYDITRKQGKSTPVTRRQLPITAAYAFTDYRSQGQTIKKVIVDIARPPSGGLTPFNAYVALSRSSGRRTIRLL 1797          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A409WW68_PSICY (ATP-dependent DNA helicase n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409WW68_PSICY)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-12
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    7 VTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFT--INRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSP 438
            + N    ++ DI LD RE        G    +L+YPP  +L   +   R  L+ DG+  G+I   P    FS+  KG++K T  I R Q  ++ G   + Y++QG+TI  +++D+ KP  G +    VYVA+SR+     + LL P
Sbjct: 1802 IANGTRGIIHDIILDEREWTHPTITDG--TAKLKYPPAMILFKPNK--RTELQFDGVEPGLIPLTPSEATFSVKTKGKKKKTMLIKRRQYGITAGYAFTDYKSQGQTIEYVIIDLAKPPTGSLSPFGVYVAMSRSRGRDTIRLLRP 1943          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A165G1A7_9BASI (Uncharacterized protein (Fragment) n=2 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165G1A7_9BASI)

HSP 1 Score: 69.3 bits (168), Expect = 2.160e-12
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  166 LDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 432
            L GL  G+I   P  +KF IVD   ++ T+ R+Q+P++     + YR+QG+TIP +++DI  P  G++ +   YVALSR+     + LL
Sbjct:    1 LSGLEAGIIPILPTTKKFRIVDARGKEHTVTRLQLPMTPAYAFTDYRSQGQTIPNVIVDISTPPTGHITAFNAYVALSRSKGRQSIRLL 89          
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Match: A0A1J8QLR3_9AGAM (Uncharacterized protein n=1 Tax=Rhizopogon vesiculosus TaxID=180088 RepID=A0A1J8QLR3_9AGAM)

HSP 1 Score: 71.2 bits (173), Expect = 2.620e-12
Identity = 48/144 (33.33%), Postives = 75/144 (52.08%), Query Frame = 1
Query:    1 LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAADRAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSVYRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLL 432
            L + N++   +  I LD RE  F + V    +VEL YPP  +L+ ++      ++L GL + V+    +   F+I     QK +I R Q+P++     + YR+QG+TI  L++DI  P  G +    VYVALSR      + LL
Sbjct:   13 LDIANSSCGEITKIVLDERETGFTLTVP---IVELAYPPAYILVKMNRTK--AVQLAGLEKNVLSLVSLGSTFTITHGKGQK-SIKRKQLPITAAYSFTDYRSQGQTIANLIIDIGTPPTGGLTFFNVYVALSRGHGRGNIRLL 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13003.5818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2I1_ECTSI2.650e-4455.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI1.120e-4255.92ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KXW4_9PHAE7.770e-2747.46ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A2R6NF34_9APHY1.020e-1234.48ATP-dependent DNA helicase n=1 Tax=Hermanssonia ce... [more]
A0A8H8MJZ9_9AGAM1.060e-1235.17ATP-dependent DNA helicase n=1 Tax=Ceratobasidium ... [more]
A0A146HLB2_MYCCL1.470e-1233.08ATP-dependent DNA helicase n=1 Tax=Mycena chloroph... [more]
A0A066V913_9AGAM1.470e-1233.33ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhiz... [more]
A0A409WW68_PSICY1.480e-1232.88ATP-dependent DNA helicase n=1 Tax=Psilocybe cyane... [more]
A0A165G1A7_9BASI2.160e-1238.20Uncharacterized protein (Fragment) n=2 Tax=Calocer... [more]
A0A1J8QLR3_9AGAM2.620e-1233.33Uncharacterized protein n=1 Tax=Rhizopogon vesicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13003contigM-pyrifera_M_contig13003:819..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue2e-37
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.3625777-CDS-M-pyrifera_M_contig13003:818..12771622815805.3625777-CDS-M-pyrifera_M_contig13003:818..1277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13003 819..1277 +
1692277578.5482726-CDS-M-pyrifera_M_contig13003:818..12771692277578.5482726-CDS-M-pyrifera_M_contig13003:818..1277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13003 819..1277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13003.5818.1prot_M-pyrifera_M_contig13003.5818.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13003 819..1277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13003.5818.1

>prot_M-pyrifera_M_contig13003.5818.1 ID=prot_M-pyrifera_M_contig13003.5818.1|Name=mRNA_M-pyrifera_M_contig13003.5818.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
LGVTNNADAVVVDIELDTREPYFRIKVTGYHVVELQYPPTRVLIYIDAAD
RAGLKLDGLHRGVIGCCPVNRKFSIVDKGRQKFTINRMQVPLSLGILSSV
YRTQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVLLS
TI*
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mRNA from alignment at M-pyrifera_M_contig13003:819..1277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13003.5818.1 ID=mRNA_M-pyrifera_M_contig13003.5818.1|Name=mRNA_M-pyrifera_M_contig13003.5818.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig13003:819..1277+ (Macrocystis pyrifera P11B4 male)
CTCGGCGTGACGAACAACGCCGACGCGGTAGTCGTGGACATCGAGCTCGA CACACGAGAACCATACTTTCGTATTAAGGTCACCGGATATCATGTCGTCG AACTACAGTATCCACCTACGCGAGTGCTCATCTACATCGACGCCGCCGAC AGAGCTGGGCTGAAGTTGGACGGGCTCCATCGAGGTGTCATCGGCTGCTG TCCGGTTAACAGGAAGTTCTCCATCGTTGATAAAGGCAGGCAGAAATTCA CCATCAACAGAATGCAGGTGCCTCTGTCTCTTGGTATTCTTTCCTCAGTC TATCGAACGCAAGGCGAAACCATCCCTAAACTTGTGCTCGACATTCGTAA GCCAGTAGACGGCTATATGGACAGCGCGGCTGTCTACGTCGCTCTGTCCC GAGCGACCGATGCCAGCAAGCTGTTCTTGCTGTCGCCGGTTTTACTCTCG ACAATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13003:819..1277+

>mRNA_M-pyrifera_M_contig13003.5818.1 ID=mRNA_M-pyrifera_M_contig13003.5818.1|Name=mRNA_M-pyrifera_M_contig13003.5818.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig13003:819..1277+ (Macrocystis pyrifera P11B4 male)
CTCGGCGTGACGAACAACGCCGACGCGGTAGTCGTGGACATCGAGCTCGA
CACACGAGAACCATACTTTCGTATTAAGGTCACCGGATATCATGTCGTCG
AACTACAGTATCCACCTACGCGAGTGCTCATCTACATCGACGCCGCCGAC
AGAGCTGGGCTGAAGTTGGACGGGCTCCATCGAGGTGTCATCGGCTGCTG
TCCGGTTAACAGGAAGTTCTCCATCGTTGATAAAGGCAGGCAGAAATTCA
CCATCAACAGAATGCAGGTGCCTCTGTCTCTTGGTATTCTTTCCTCAGTC
TATCGAACGCAAGGCGAAACCATCCCTAAACTTGTGCTCGACATTCGTAA
GCCAGTAGACGGCTATATGGACAGCGCGGCTGTCTACGTCGCTCTGTCCC
GAGCGACCGATGCCAGCAAGCTGTTCTTGCTGTCGCCGGTTTTACTCTCG
ACAATCTGACTCGGCGTGACGAACAACGCCGACGCGGTAGTCGTGGACAT
CGAGCTCGACACACGAGAACCATACTTTCGTATTAAGGTCACCGGATATC
ATGTCGTCGAACTACAGTATCCACCTACGCGAGTGCTCATCTACATCGAC
GCCGCCGACAGAGCTGGGCTGAAGTTGGACGGGCTCCATCGAGGTGTCAT
CGGCTGCTGTCCGGTTAACAGGAAGTTCTCCATCGTTGATAAAGGCAGGC
AGAAATTCACCATCAACAGAATGCAGGTGCCTCTGTCTCTTGGTATTCTT
TCCTCAGTCTATCGAACGCAAGGCGAAACCATCCCTAAACTTGTGCTCGA
CATTCGTAAGCCAGTAGACGGCTATATGGACAGCGCGGCTGTCTACGTCG
CTCTGTCCCGAGCGACCGATGCCAGCAAGCTGTTCTTGCTGTCGCCGGTT
TTACTCTCGACAATCTGA
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