mRNA_M-pyrifera_M_contig102695.581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102695.581.1
Unique NamemRNA_M-pyrifera_M_contig102695.581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102695.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102695contigM-pyrifera_M_contig102695:47..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog115417.EPrPW00000016827
Preferred nameARO7
KEGG rclassRC03116
KEGG koko:K01850
KEGG ReactionR01715
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00024,M00025
Hectar predicted targeting categoryother localisation
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004106,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006568,GO:0006570,GO:0006571,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016866,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223
EggNOG free text desc.Chorismate mutase. Source PGD
EggNOG OGs1MCX9@121069,COG1605@1,KOG0795@2759
EC5.4.99.5
COG Functional cat.E
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size522
Cds size516
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.9962702-CDS-M-pyrifera_M_contig102695:46..5621622815530.9962702-CDS-M-pyrifera_M_contig102695:46..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102695 47..562 -
1692277451.5063047-CDS-M-pyrifera_M_contig102695:46..5621692277451.5063047-CDS-M-pyrifera_M_contig102695:46..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102695 47..562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.01187-UTR-M-pyrifera_M_contig102695:562..5681622815531.01187-UTR-M-pyrifera_M_contig102695:562..568Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102695 563..568 -
1692277451.5193322-UTR-M-pyrifera_M_contig102695:562..5681692277451.5193322-UTR-M-pyrifera_M_contig102695:562..568Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102695 563..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102695.581.1prot_M-pyrifera_M_contig102695.581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102695 47..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102695.581.1

>prot_M-pyrifera_M_contig102695.581.1 ID=prot_M-pyrifera_M_contig102695.581.1|Name=mRNA_M-pyrifera_M_contig102695.581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
MGMFDRLFKSAEQRTADARASAEKKMHGAMMAFLKREKEFDMGTFETLLR
DAQSAAGVESWRKVLRTAEQQEELEREVGSLLKVVASLTEDEREDPGFIR
RPAKLRLAREAGVDVQTVNRCLTEYESFATVHEWVHSRIAKGLPVPDSTS
EAMALMSRPGERTARVTQAAKR
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mRNA from alignment at M-pyrifera_M_contig102695:47..568-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102695.581.1 ID=mRNA_M-pyrifera_M_contig102695.581.1|Name=mRNA_M-pyrifera_M_contig102695.581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig102695:47..568- (Macrocystis pyrifera P11B4 male)
CGCGCAATGGGCATGTTCGACCGTCTGTTCAAGAGCGCCGAGCAGCGGAC
AGCGGACGCACGTGCGTCGGCGGAGAAGAAGATGCACGGTGCGATGATGG
CGTTTCTGAAGCGGGAGAAGGAATTCGACATGGGCACATTTGAGACTCTG
TTGCGAGATGCCCAGAGTGCTGCTGGGGTGGAGAGTTGGAGGAAAGTGCT
TCGTACTGCAGAACAGCAAGAGGAGCTGGAGCGAGAAGTGGGGTCGCTGC
TGAAAGTGGTGGCGTCGCTGACAGAGGACGAGAGGGAAGATCCGGGGTTT
ATTCGAAGACCAGCCAAGTTGAGGCTCGCGAGAGAGGCTGGTGTCGATGT
GCAAACGGTGAACCGATGCCTCACCGAATACGAATCCTTCGCCACGGTGC
ACGAGTGGGTGCACTCCAGGATCGCGAAAGGACTGCCTGTGCCAGACTCC
ACCTCGGAAGCAATGGCACTCATGAGCAGACCAGGAGAACGCACCGCCAG
AGTCACGCAAGCAGCAAAGAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102695:47..568-

>mRNA_M-pyrifera_M_contig102695.581.1 ID=mRNA_M-pyrifera_M_contig102695.581.1|Name=mRNA_M-pyrifera_M_contig102695.581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig102695:47..568- (Macrocystis pyrifera P11B4 male)
ATGGGCATGTTCGACCGTCTGTTCAAGAGCGCCGAGCAGCGGACAGCGGA
CGCACGTGCGTCGGCGGAGAAGAAGATGCACGGTGCGATGATGGCGTTTC
TGAAGCGGGAGAAGGAATTCGACATGGGCACATTTGAGACTCTGTTGCGA
GATGCCCAGAGTGCTGCTGGGGTGGAGAGTTGGAGGAAAGTGCTTCGTAC
TGCAGAACAGCAAGAGGAGCTGGAGCGAGAAGTGGGGTCGCTGCTGAAAG
TGGTGGCGTCGCTGACAGAGGACGAGAGGGAAGATCCGGGGTTTATTCGA
AGACCAGCCAAGTTGAGGCTCGCGAGAGAGGCTGGTGTCGATGTGCAAAC
GGTGAACCGATGCCTCACCGAATACGAATCCTTCGCCACGGTGCACGAGT
GGGTGCACTCCAGGATCGCGAAAGGACTGCCTGTGCCAGACTCCACCTCG
GAAGCAATGGCACTCATGAGCAGACCAGGAGAACGCACCGCCAGAGTCAC
GCAAGCAGCAAAGAGAATGGGCATGTTCGACCGTCTGTTCAAGAGCGCCG
AGCAGCGGACAGCGGACGCACGTGCGTCGGCGGAGAAGAAGATGCACGGT
GCGATGATGGCGTTTCTGAAGCGGGAGAAGGAATTCGACATGGGCACATT
TGAGACTCTGTTGCGAGATGCCCAGAGTGCTGCTGGGGTGGAGAGTTGGA
GGAAAGTGCTTCGTACTGCAGAACAGCAAGAGGAGCTGGAGCGAGAAGTG
GGGTCGCTGCTGAAAGTGGTGGCGTCGCTGACAGAGGACGAGAGGGAAGA
TCCGGGGTTTATTCGAAGACCAGCCAAGTTGAGGCTCGCGAGAGAGGCTG
GTGTCGATGTGCAAACGGTGAACCGATGCCTCACCGAATACGAATCCTTC
GCCACGGTGCACGAGTGGGTGCACTCCAGGATCGCGAAAGGACTGCCTGT
GCCAGACTCCACCTCGGAAGCAATGGCACTCATGAGCAGACCAGGAGAAC
GCACCGCCAGAGTCACGCAAGCAGCAAAGAGA
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