mRNA_M-pyrifera_M_contig12965.5799.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12965.5799.1
Unique NamemRNA_M-pyrifera_M_contig12965.5799.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: D8LRN9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN9_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 7.330e-52
Identity = 84/141 (59.57%), Postives = 105/141 (74.47%), Query Frame = 1 
Query:    1 VRAPVEALPDDEVMESGWEELGISDERAAEIATAMVEDDAPSSGIDFYKTGGAPTNDEESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED 423
            +RA +  +P+ E++ESGWEELG+ D+ AA +AT MV++D P+ G+DFYKTGG PT D ESDPEAA+ L  +E++               AEGTAK++EC VCGYKMFVAKGREFKFFGD FKCPECGAGK+KF E  MD+D
Sbjct:  325 LRAAISDVPEGEMLESGWEELGMDDQWAARVATDMVDNDDPAGGLDFYKTGGPPTGDAESDPEAAKALAAMEEDMAAKKTEPQDEKEPEAEGTAKAYECTVCGYKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDDD 465
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S1E252_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E252_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.700e-16
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 1 
Query:   49 GWEELGISDERAAEIAT-------AMVEDDAPSSGIDFYKTGGAPTNDE-----ESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED 423
            GW+ LG++ E+A  I T         ++D+  S  +  Y   G   +D+     E D +  +M K+ EDE               ++G   +FEC  CGY +FVA+GR  KFFG GFKCPECGA KD+F   ++D+D
Sbjct:   21 GWQVLGLTQEKANAIYTEEKNRNFTSLKDEIYSDEVFNYNEKGQRVDDDGNVIDEEDRKRNEMEKEWEDESP-------------SDG---AFECGNCGYTIFVAEGRGSKFFGAGFKCPECGAEKDQFFSPDLDDD 141
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A835Z4L2_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.280e-15
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  271 EGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTE 405
            EGTA++FEC  CGY ++VAKGRE+KFFGD FKCPECGA K KF E
Sbjct:  281 EGTARAFECGSCGYTLYVAKGREWKFFGDDFKCPECGASKGKFQE 325
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S2XMQ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMQ9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.920e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  277 TAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFT 402
            T+ +FEC  CG+ +FVAKGREFKFFGD FKCPECGAGKDKF 
Sbjct:  445 TSNAFECGECGFTIFVAKGREFKFFGDNFKCPECGAGKDKFV 486
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: L1IPJ7_GUITC (Rubredoxin-like domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPJ7_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 1.750e-13
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:  268 AEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTE 405
            AEGT + +EC VCGY +FVAKGREFKFFGD FKCP+CGAGK  F +
Sbjct:  386 AEGTHE-YECTVCGYTLFVAKGREFKFFGDNFKCPQCGAGKQYFKD 430
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S0NDR1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NDR1_9CRYP)

HSP 1 Score: 73.9 bits (180), Expect = 5.410e-13
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  268 AEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTE 405
            AEGT + +EC VCGY +FVAKGREFKFFGD FKCP+CGA K  F +
Sbjct:  239 AEGTHE-YECTVCGYTLFVAKGREFKFFGDNFKCPQCGASKQYFKD 283
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S2A4S2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4S2_TRICV)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-12
Identity = 49/133 (36.84%), Postives = 61/133 (45.86%), Query Frame = 1 
Query:    7 APVEALPDDEVMESGWEELGISDERAAEIATAMVEDDAPSSGIDFYKTGGAPTNDEESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAK-SFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFT 402
            A  +A  D   +  GWE LG++ E A  I     E    SS    Y       ND+       Q L +L D                 E ++  ++EC  CG+ MFVA GRE KFFG GFKCPECGA KD+F 
Sbjct:  151 AVTKAGKDQTSLTPGWEVLGLTKEDAQRIWDEEEESGFVSSMEAKYSRAKLKYNDK------GQRLDELGDVKPGQEDLDGNDDGSEVEASSSGAYECGQCGFTMFVAPGREKKFFGPGFKCPECGAAKDQFV 277
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A1E7FDG3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDG3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.170e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  268 AEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED 423
            A+ T+    CQ CG+ +F+AKGRE KFFG+GF CPECGA KD+F   ++DED
Sbjct:  404 AQPTSNVMGCQDCGFTLFIAKGREAKFFGEGFVCPECGAAKDRFDPVDIDED 455
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A8J6CDY1_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDY1_DIALT)

HSP 1 Score: 73.2 bits (178), Expect = 2.030e-12
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  283 KSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMD 417
            K+ EC  CGY +F A GREFKFFGD FKCP+CGAGKD FT+ + +
Sbjct:  364 KALECSNCGYTLFPAAGREFKFFGDDFKCPQCGAGKDAFTDAKTE 408
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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S2WQG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WQG7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.260e-12
Identity = 54/123 (43.90%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   49 GWEELGISDERAAEIATAMVEDDAPSSGIDFYKTG-----GAPTNDEESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFT 402
            GWE LG+ +E A  I   + +       I F KTG     G+     +S     +   +LE+      XXXXXXXXX    T   FEC  CGY +F+AKGR+FKFF D F+CPECGA KDKF 
Sbjct:  378 GWEVLGLDEETATTIFNEVAK-------IGF-KTGREVKYGSGNQQYDSKGRRLEKTGKLENPEEATDXXXXXXXXXENTPTGSVFECGGCGYTLFIAKGRDFKFFSDTFECPECGAKKDKFV 492
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRN9_ECTSI7.330e-5259.57Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S1E252_9STRA7.700e-1636.50Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A835Z4L2_9STRA6.280e-1573.33Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2XMQ9_9STRA2.920e-1476.19Hypothetical protein n=1 Tax=Attheya septentrional... [more]
L1IPJ7_GUITC1.750e-1371.74Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S0NDR1_9CRYP5.410e-1369.57Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S2A4S2_TRICV1.010e-1236.84Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FDG3_9STRA1.170e-1257.69Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A8J6CDY1_DIALT2.030e-1264.44Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S2WQG7_9STRA2.260e-1243.90Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12965contigM-pyrifera_M_contig12965:255..2201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue6.5e-43
Seed eggNOG ortholog2880.D8LRN9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1U7@1,2S947@2759
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-12_000500.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size426
Cds size426
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12965.5799.1prot_M-pyrifera_M_contig12965.5799.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12965 255..2201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.6790357-CDS-M-pyrifera_M_contig12965:254..4011622815803.6790357-CDS-M-pyrifera_M_contig12965:254..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 255..401 +
1692277577.518045-CDS-M-pyrifera_M_contig12965:254..4011692277577.518045-CDS-M-pyrifera_M_contig12965:254..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 255..401 +
1622815803.692693-CDS-M-pyrifera_M_contig12965:992..11531622815803.692693-CDS-M-pyrifera_M_contig12965:992..1153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 993..1153 +
1692277577.5304582-CDS-M-pyrifera_M_contig12965:992..11531692277577.5304582-CDS-M-pyrifera_M_contig12965:992..1153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 993..1153 +
1622815803.7036676-CDS-M-pyrifera_M_contig12965:2083..22011622815803.7036676-CDS-M-pyrifera_M_contig12965:2083..2201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 2084..2201 +
1692277577.5401664-CDS-M-pyrifera_M_contig12965:2083..22011692277577.5401664-CDS-M-pyrifera_M_contig12965:2083..2201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 2084..2201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12965.5799.1

>prot_M-pyrifera_M_contig12965.5799.1 ID=prot_M-pyrifera_M_contig12965.5799.1|Name=mRNA_M-pyrifera_M_contig12965.5799.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
VRAPVEALPDDEVMESGWEELGISDERAAEIATAMVEDDAPSSGIDFYKT
GGAPTNDEESDPEAAQMLKQLEDEMEEKKTEPQDEKEPEAEGTAKSFECQ
VCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED*
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mRNA from alignment at M-pyrifera_M_contig12965:255..2201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12965.5799.1 ID=mRNA_M-pyrifera_M_contig12965.5799.1|Name=mRNA_M-pyrifera_M_contig12965.5799.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at M-pyrifera_M_contig12965:255..2201+ (Macrocystis pyrifera P11B4 male)
GTGCGTGCACCAGTTGAGGCGTTGCCCGATGACGAGGTGATGGAATCTGG
GTGGGAAGAGCTGGGCATCAGCGACGAGCGGGCGGCGGAGATCGCCACCG
CGATGGTAGAAGACGACGCACCGTCTAGTGGCATTGACTTCTACAAGGTG
GGGGGAGGCGAGGGGACGGAACGCGTGGCGCGCCCACCTCGAGACCAGGA
GGGTGCAAGGCATGCCATGCAATGCTATGCCGTGGAGCGTGTGCGTGGGG
ATAGCTGCGGCTTGTGTATGTTTTGTGCGGGTAATGTACTGGCTGTAGCC
TACGCAGCGCTGGGGAGGGCTCGAGGGTATCTTGTCGGCCAACGTAGGCC
TAAAATGCCTAGTGAGTTAGTTTACCTTTTACACGCGCCGGCTGTGGGCA
TGGGGCACGAGCCGGTGCCAGAGGGCAGGAGAAGCCCGATGTGCCACAGC
CATGTGAAACGGAATGAATGGGTGGGTGGGATGGGCTAATCCCACGAGGC
GCGTGGTAAACTGCCGTCTCGGGTGGGACGTCTGCCAGCTGTCGCTGTCG
CTATCGCCCGTGTAACGGTCTCGAAATTTCCCTCACGAAATGCTCCCAGC
ATGGCACGGCTTTGCGGTATGATCCCATCCCCCGTCTCCTGACCTGCCGC
GCGCGTTCCTCGCCGCCACGTCCAACTAACTCCTTCCTCGACTCCCTTGT
CGGTTTTTTGCACAAACTTTATGGCTCTGTTCGGACAGACCGGAGGGGCA
CCGACGAACGACGAAGAGTCGGACCCCGAGGCGGCTCAGATGCTGAAACA
GCTTGAGGACGAGATGGAGGAGAAGAAGACGGAGCCGCAAGACGAGAAGG
AGCCGGAGGCGGAGGGGACCGCGAAGTCGTTCGAGTGCCAAGTGTGCGGG
TGAGGTTTCCTCCGGCCCCATCCCCCATCCCCCCCCCCCTTTTTGTTCTG
ATTTTTGTCCATTGAAGGTTGCGGAGGGCTCGACAGTTGTCTCGGGGTTT
CCGGTAGTGGTGAGGGTTGAGCCACAACGTCCGTTGTTGGTGTTGAATGA
GGTTTTCTGTTTGAAGGTCCTTCTCTTGGGTCTTCGTGTATTCCCTATCA
ACACCTGGTACGGTACCTGGTGGTGTTCTACCCGCTTGGTTTTTTAGGTA
CTCCTAGCGAGTGTAGGGTTTTGCAATATAGGAGGAGGCGTGGCGTGGTG
TCTACGGCACGAAGGGGTGGACCAAGGGTGGCGTCACGGTGTCGAGAAGC
GAACGAAGCGAGGTGTAGGCCAAGCGCGGGGCTCCGTAGGGTTTGTCAAG
CGCGGATTCATTCTCCGCCCCGCATTCGTGGGAACGAAAAGTCGGAAGAC
CGAAAGAACGCGCAGCGCGGCTACTGTTTTGCAGCGCGCCAGATTCATGT
GCTTTGTTTTCGCTTTGAAGAGAGATTTTTCCGCGAAGGGAATGAATGGC
CTCCCAAGCGGGTGCGGTGTCACGCTTGAACTAGGCTGCTGTTTTTTCTT
CCAAGACAAAGCGTCCAACCGCGTGACCCTGCGCTGCGCCGCCGGTTCCA
CCCGCAGGGGGAAACGTCTGGGATGTGTTTAACGTGGCCTGCCTGGACGA
GTGCCGATAATGATGCCTTGGTTCTCGACTCAGCAGCAGCATATGGCCTG
AAGCGAACTTTTTCTCACGGTTCGTTCCCCCCACACCGCTTTCTTCCTCT
TTTTTTTTTTTTTTTTTTTTGTTCTTCTTCTCTTGCTTCTTCCCTTTGTT
CCCCCCGCGCGCCCGCCCGTCCACGGAAAAAAAAACGAATGGTGTCGCCG
TCTCTCGCTCACCGGGTGCGGCGGTCCAGGTACAAGATGTTCGTGGCGAA
AGGGCGCGAGTTCAAGTTCTTCGGCGACGGGTTCAAGTGCCCAGAGTGCG
GGGCAGGAAAGGACAAGTTCACGGAGTGCGAGATGGACGAAGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12965:255..2201+

>mRNA_M-pyrifera_M_contig12965.5799.1 ID=mRNA_M-pyrifera_M_contig12965.5799.1|Name=mRNA_M-pyrifera_M_contig12965.5799.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig12965:255..2201+ (Macrocystis pyrifera P11B4 male)
GTGCGTGCACCAGTTGAGGCGTTGCCCGATGACGAGGTGATGGAATCTGG
GTGGGAAGAGCTGGGCATCAGCGACGAGCGGGCGGCGGAGATCGCCACCG
CGATGGTAGAAGACGACGCACCGTCTAGTGGCATTGACTTCTACAAGGTG
CGTGCACCAGTTGAGGCGTTGCCCGATGACGAGGTGATGGAATCTGGGTG
GGAAGAGCTGGGCATCAGCGACGAGCGGGCGGCGGAGATCGCCACCGCGA
TGGTAGAAGACGACGCACCGTCTAGTGGCATTGACTTCTACAAGACCGGA
GGGGCACCGACGAACGACGAAGAGTCGGACCCCGAGGCGGCTCAGATGCT
GAAACAGCTTGAGGACGAGATGGAGGAGAAGAAGACGGAGCCGCAAGACG
AGAAGGAGCCGGAGGCGGAGGGGACCGCGAAGTCGTTCGAGTGCCAAGTG
TGCGGACCGGAGGGGCACCGACGAACGACGAAGAGTCGGACCCCGAGGCG
GCTCAGATGCTGAAACAGCTTGAGGACGAGATGGAGGAGAAGAAGACGGA
GCCGCAAGACGAGAAGGAGCCGGAGGCGGAGGGGACCGCGAAGTCGTTCG
AGTGCCAAGTGTGCGGGTACAAGATGTTCGTGGCGAAAGGGCGCGAGTTC
AAGTTCTTCGGCGACGGGTTCAAGTGCCCAGAGTGCGGGGCAGGAAAGGA
CAAGTTCACGGAGTGCGAGATGGACGAAGACTGAGTACAAGATGTTCGTG
GCGAAAGGGCGCGAGTTCAAGTTCTTCGGCGACGGGTTCAAGTGCCCAGA
GTGCGGGGCAGGAAAGGACAAGTTCACGGAGTGCGAGATGGACGAAGACT
GA
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