mRNA_M-pyrifera_M_contig12965.5799.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig12965.5799.1
Unique Name	mRNA_M-pyrifera_M_contig12965.5799.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: D8LRN9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN9_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 7.330e-52
Identity = 84/141 (59.57%), Postives = 105/141 (74.47%), Query Frame = 1

Query:    1 VRAPVEALPDDEVMESGWEELGISDERAAEIATAMVEDDAPSSGIDFYKTGGAPTNDEESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED 423
            +RA +  +P+ E++ESGWEELG+ D+ AA +AT MV++D P+ G+DFYKTGG PT D ESDPEAA+ L  +E++               AEGTAK++EC VCGYKMFVAKGREFKFFGD FKCPECGAGK+KF E  MD+D
Sbjct:  325 LRAAISDVPEGEMLESGWEELGMDDQWAARVATDMVDNDDPAGGLDFYKTGGPPTGDAESDPEAAKALAAMEEDMAAKKTEPQDEKEPEAEGTAKAYECTVCGYKMFVAKGREFKFFGDDFKCPECGAGKNKFLESSMDDD 465

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S1E252_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E252_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.700e-16
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 1

Query:   49 GWEELGISDERAAEIAT-------AMVEDDAPSSGIDFYKTGGAPTNDE-----ESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED 423
            GW+ LG++ E+A  I T         ++D+  S  +  Y   G   +D+     E D +  +M K+ EDE               ++G   +FEC  CGY +FVA+GR  KFFG GFKCPECGA KD+F   ++D+D
Sbjct:   21 GWQVLGLTQEKANAIYTEEKNRNFTSLKDEIYSDEVFNYNEKGQRVDDDGNVIDEEDRKRNEMEKEWEDESP-------------SDG---AFECGNCGYTIFVAEGRGSKFFGAGFKCPECGAEKDQFFSPDLDDD 141

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A835Z4L2_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.280e-15
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1

Query:  271 EGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTE 405
            EGTA++FEC  CGY ++VAKGRE+KFFGD FKCPECGA K KF E
Sbjct:  281 EGTARAFECGSCGYTLYVAKGREWKFFGDDFKCPECGASKGKFQE 325

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S2XMQ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMQ9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.920e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1

Query:  277 TAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFT 402
            T+ +FEC  CG+ +FVAKGREFKFFGD FKCPECGAGKDKF 
Sbjct:  445 TSNAFECGECGFTIFVAKGREFKFFGDNFKCPECGAGKDKFV 486

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: L1IPJ7_GUITC (Rubredoxin-like domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPJ7_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 1.750e-13
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1

Query:  268 AEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTE 405
            AEGT + +EC VCGY +FVAKGREFKFFGD FKCP+CGAGK  F +
Sbjct:  386 AEGTHE-YECTVCGYTLFVAKGREFKFFGDNFKCPQCGAGKQYFKD 430

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S0NDR1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NDR1_9CRYP)

HSP 1 Score: 73.9 bits (180), Expect = 5.410e-13
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1

Query:  268 AEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTE 405
            AEGT + +EC VCGY +FVAKGREFKFFGD FKCP+CGA K  F +
Sbjct:  239 AEGTHE-YECTVCGYTLFVAKGREFKFFGDNFKCPQCGASKQYFKD 283

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S2A4S2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4S2_TRICV)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-12
Identity = 49/133 (36.84%), Postives = 61/133 (45.86%), Query Frame = 1

Query:    7 APVEALPDDEVMESGWEELGISDERAAEIATAMVEDDAPSSGIDFYKTGGAPTNDEESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAK-SFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFT 402
            A  +A  D   +  GWE LG++ E A  I     E    SS    Y       ND+       Q L +L D                 E ++  ++EC  CG+ MFVA GRE KFFG GFKCPECGA KD+F 
Sbjct:  151 AVTKAGKDQTSLTPGWEVLGLTKEDAQRIWDEEEESGFVSSMEAKYSRAKLKYNDK------GQRLDELGDVKPGQEDLDGNDDGSEVEASSSGAYECGQCGFTMFVAPGREKKFFGPGFKCPECGAAKDQFV 277

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A1E7FDG3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDG3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.170e-12
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1

Query:  268 AEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED 423
            A+ T+    CQ CG+ +F+AKGRE KFFG+GF CPECGA KD+F   ++DED
Sbjct:  404 AQPTSNVMGCQDCGFTLFIAKGREAKFFGEGFVCPECGAAKDRFDPVDIDED 455

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A8J6CDY1_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDY1_DIALT)

HSP 1 Score: 73.2 bits (178), Expect = 2.030e-12
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1

Query:  283 KSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMD 417
            K+ EC  CGY +F A GREFKFFGD FKCP+CGAGKD FT+ + +
Sbjct:  364 KALECSNCGYTLFPAAGREFKFFGDDFKCPQCGAGKDAFTDAKTE 408

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BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Match: A0A7S2WQG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WQG7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.260e-12
Identity = 54/123 (43.90%), Postives = 67/123 (54.47%), Query Frame = 1

Query:   49 GWEELGISDERAAEIATAMVEDDAPSSGIDFYKTG-----GAPTNDEESDPEAAQMLKQLEDEXXXXXXXXXXXXXXXAEGTAKSFECQVCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFT 402
            GWE LG+ +E A  I   + +       I F KTG     G+     +S     +   +LE+      XXXXXXXXX    T   FEC  CGY +F+AKGR+FKFF D F+CPECGA KDKF 
Sbjct:  378 GWEVLGLDEETATTIFNEVAK-------IGF-KTGREVKYGSGNQQYDSKGRRLEKTGKLENPEEATDXXXXXXXXXENTPTGSVFECGGCGYTLFIAKGRDFKFFSDTFECPECGAKKDKFV 492

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig12965.5799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRN9_ECTSI	7.330e-52	59.57	Rubredoxin-like domain-containing protein n=1 Tax=...	[more]
A0A7S1E252_9STRA	7.700e-16	36.50	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A835Z4L2_9STRA	6.280e-15	73.33	Rubredoxin-like domain-containing protein n=1 Tax=...	[more]
A0A7S2XMQ9_9STRA	2.920e-14	76.19	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
L1IPJ7_GUITC	1.750e-13	71.74	Rubredoxin-like domain-containing protein n=2 Tax=...	[more]
A0A7S0NDR1_9CRYP	5.410e-13	69.57	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A7S2A4S2_TRICV	1.010e-12	36.84	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A1E7FDG3_9STRA	1.170e-12	57.69	Uncharacterized protein n=1 Tax=Fragilariopsis cyl...	[more]
A0A8J6CDY1_DIALT	2.030e-12	64.44	Rubredoxin-like domain-containing protein n=2 Tax=...	[more]
A0A7S2WQG7_9STRA	2.260e-12	43.90	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig12965	contig	M-pyrifera_M_contig12965:255..2201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	180.3
Seed ortholog evalue	6.5e-43
Seed eggNOG ortholog	2880.D8LRN9
Hectar predicted targeting category	other localisation
EggNOG OGs	2E1U7@1,2S947@2759
Ec32 ortholog description	Rubredoxin-type fold
Ec32 ortholog	Ec-12_000500.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	3
Model size	426
Cds size	426
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig12965.5799.1	prot_M-pyrifera_M_contig12965.5799.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig12965 255..2201 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815803.6790357-CDS-M-pyrifera_M_contig12965:254..401	1622815803.6790357-CDS-M-pyrifera_M_contig12965:254..401	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig12965 255..401 +
1692277577.518045-CDS-M-pyrifera_M_contig12965:254..401	1692277577.518045-CDS-M-pyrifera_M_contig12965:254..401	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig12965 255..401 +
1622815803.692693-CDS-M-pyrifera_M_contig12965:992..1153	1622815803.692693-CDS-M-pyrifera_M_contig12965:992..1153	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig12965 993..1153 +
1692277577.5304582-CDS-M-pyrifera_M_contig12965:992..1153	1692277577.5304582-CDS-M-pyrifera_M_contig12965:992..1153	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig12965 993..1153 +
1622815803.7036676-CDS-M-pyrifera_M_contig12965:2083..2201	1622815803.7036676-CDS-M-pyrifera_M_contig12965:2083..2201	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig12965 2084..2201 +
1692277577.5401664-CDS-M-pyrifera_M_contig12965:2083..2201	1692277577.5401664-CDS-M-pyrifera_M_contig12965:2083..2201	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig12965 2084..2201 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig12965:255..2201+
coding sequence from alignment at M-pyrifera_M_contig12965:255..2201+

protein sequence of mRNA_M-pyrifera_M_contig12965.5799.1

>prot_M-pyrifera_M_contig12965.5799.1 ID=prot_M-pyrifera_M_contig12965.5799.1|Name=mRNA_M-pyrifera_M_contig12965.5799.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
VRAPVEALPDDEVMESGWEELGISDERAAEIATAMVEDDAPSSGIDFYKT
GGAPTNDEESDPEAAQMLKQLEDEMEEKKTEPQDEKEPEAEGTAKSFECQ
VCGYKMFVAKGREFKFFGDGFKCPECGAGKDKFTECEMDED*

mRNA from alignment at M-pyrifera_M_contig12965:255..2201+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig12965.5799.1 ID=mRNA_M-pyrifera_M_contig12965.5799.1|Name=mRNA_M-pyrifera_M_contig12965.5799.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at M-pyrifera_M_contig12965:255..2201+ (Macrocystis pyrifera P11B4 male)
GTGCGTGCACCAGTTGAGGCGTTGCCCGATGACGAGGTGATGGAATCTGG
GTGGGAAGAGCTGGGCATCAGCGACGAGCGGGCGGCGGAGATCGCCACCG
CGATGGTAGAAGACGACGCACCGTCTAGTGGCATTGACTTCTACAAGGTG
GGGGGAGGCGAGGGGACGGAACGCGTGGCGCGCCCACCTCGAGACCAGGA
GGGTGCAAGGCATGCCATGCAATGCTATGCCGTGGAGCGTGTGCGTGGGG
ATAGCTGCGGCTTGTGTATGTTTTGTGCGGGTAATGTACTGGCTGTAGCC
TACGCAGCGCTGGGGAGGGCTCGAGGGTATCTTGTCGGCCAACGTAGGCC
TAAAATGCCTAGTGAGTTAGTTTACCTTTTACACGCGCCGGCTGTGGGCA
TGGGGCACGAGCCGGTGCCAGAGGGCAGGAGAAGCCCGATGTGCCACAGC
CATGTGAAACGGAATGAATGGGTGGGTGGGATGGGCTAATCCCACGAGGC
GCGTGGTAAACTGCCGTCTCGGGTGGGACGTCTGCCAGCTGTCGCTGTCG
CTATCGCCCGTGTAACGGTCTCGAAATTTCCCTCACGAAATGCTCCCAGC
ATGGCACGGCTTTGCGGTATGATCCCATCCCCCGTCTCCTGACCTGCCGC
GCGCGTTCCTCGCCGCCACGTCCAACTAACTCCTTCCTCGACTCCCTTGT
CGGTTTTTTGCACAAACTTTATGGCTCTGTTCGGACAGACCGGAGGGGCA
CCGACGAACGACGAAGAGTCGGACCCCGAGGCGGCTCAGATGCTGAAACA
GCTTGAGGACGAGATGGAGGAGAAGAAGACGGAGCCGCAAGACGAGAAGG
AGCCGGAGGCGGAGGGGACCGCGAAGTCGTTCGAGTGCCAAGTGTGCGGG
TGAGGTTTCCTCCGGCCCCATCCCCCATCCCCCCCCCCCTTTTTGTTCTG
ATTTTTGTCCATTGAAGGTTGCGGAGGGCTCGACAGTTGTCTCGGGGTTT
CCGGTAGTGGTGAGGGTTGAGCCACAACGTCCGTTGTTGGTGTTGAATGA
GGTTTTCTGTTTGAAGGTCCTTCTCTTGGGTCTTCGTGTATTCCCTATCA
ACACCTGGTACGGTACCTGGTGGTGTTCTACCCGCTTGGTTTTTTAGGTA
CTCCTAGCGAGTGTAGGGTTTTGCAATATAGGAGGAGGCGTGGCGTGGTG
TCTACGGCACGAAGGGGTGGACCAAGGGTGGCGTCACGGTGTCGAGAAGC
GAACGAAGCGAGGTGTAGGCCAAGCGCGGGGCTCCGTAGGGTTTGTCAAG
CGCGGATTCATTCTCCGCCCCGCATTCGTGGGAACGAAAAGTCGGAAGAC
CGAAAGAACGCGCAGCGCGGCTACTGTTTTGCAGCGCGCCAGATTCATGT
GCTTTGTTTTCGCTTTGAAGAGAGATTTTTCCGCGAAGGGAATGAATGGC
CTCCCAAGCGGGTGCGGTGTCACGCTTGAACTAGGCTGCTGTTTTTTCTT
CCAAGACAAAGCGTCCAACCGCGTGACCCTGCGCTGCGCCGCCGGTTCCA
CCCGCAGGGGGAAACGTCTGGGATGTGTTTAACGTGGCCTGCCTGGACGA
GTGCCGATAATGATGCCTTGGTTCTCGACTCAGCAGCAGCATATGGCCTG
AAGCGAACTTTTTCTCACGGTTCGTTCCCCCCACACCGCTTTCTTCCTCT
TTTTTTTTTTTTTTTTTTTTGTTCTTCTTCTCTTGCTTCTTCCCTTTGTT
CCCCCCGCGCGCCCGCCCGTCCACGGAAAAAAAAACGAATGGTGTCGCCG
TCTCTCGCTCACCGGGTGCGGCGGTCCAGGTACAAGATGTTCGTGGCGAA
AGGGCGCGAGTTCAAGTTCTTCGGCGACGGGTTCAAGTGCCCAGAGTGCG
GGGCAGGAAAGGACAAGTTCACGGAGTGCGAGATGGACGAAGACTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12965:255..2201+

>mRNA_M-pyrifera_M_contig12965.5799.1 ID=mRNA_M-pyrifera_M_contig12965.5799.1|Name=mRNA_M-pyrifera_M_contig12965.5799.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig12965:255..2201+ (Macrocystis pyrifera P11B4 male)
GTGCGTGCACCAGTTGAGGCGTTGCCCGATGACGAGGTGATGGAATCTGG
GTGGGAAGAGCTGGGCATCAGCGACGAGCGGGCGGCGGAGATCGCCACCG
CGATGGTAGAAGACGACGCACCGTCTAGTGGCATTGACTTCTACAAGGTG
CGTGCACCAGTTGAGGCGTTGCCCGATGACGAGGTGATGGAATCTGGGTG
GGAAGAGCTGGGCATCAGCGACGAGCGGGCGGCGGAGATCGCCACCGCGA
TGGTAGAAGACGACGCACCGTCTAGTGGCATTGACTTCTACAAGACCGGA
GGGGCACCGACGAACGACGAAGAGTCGGACCCCGAGGCGGCTCAGATGCT
GAAACAGCTTGAGGACGAGATGGAGGAGAAGAAGACGGAGCCGCAAGACG
AGAAGGAGCCGGAGGCGGAGGGGACCGCGAAGTCGTTCGAGTGCCAAGTG
TGCGGACCGGAGGGGCACCGACGAACGACGAAGAGTCGGACCCCGAGGCG
GCTCAGATGCTGAAACAGCTTGAGGACGAGATGGAGGAGAAGAAGACGGA
GCCGCAAGACGAGAAGGAGCCGGAGGCGGAGGGGACCGCGAAGTCGTTCG
AGTGCCAAGTGTGCGGGTACAAGATGTTCGTGGCGAAAGGGCGCGAGTTC
AAGTTCTTCGGCGACGGGTTCAAGTGCCCAGAGTGCGGGGCAGGAAAGGA
CAAGTTCACGGAGTGCGAGATGGACGAAGACTGAGTACAAGATGTTCGTG
GCGAAAGGGCGCGAGTTCAAGTTCTTCGGCGACGGGTTCAAGTGCCCAGA
GTGCGGGGCAGGAAAGGACAAGTTCACGGAGTGCGAGATGGACGAAGACT
GA