mRNA_M-pyrifera_M_contig12965.5800.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12965.5800.1
Unique NamemRNA_M-pyrifera_M_contig12965.5800.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12965.5800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12965contigM-pyrifera_M_contig12965:2577..3076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12965.5800.1prot_M-pyrifera_M_contig12965.5800.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12965 2714..3031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.6147113-UTR-M-pyrifera_M_contig12965:2576..27131622815803.6147113-UTR-M-pyrifera_M_contig12965:2576..2713Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12965 2577..2713 +
1692277577.4812737-UTR-M-pyrifera_M_contig12965:2576..27131692277577.4812737-UTR-M-pyrifera_M_contig12965:2576..2713Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12965 2577..2713 +
1622815803.6395748-UTR-M-pyrifera_M_contig12965:3031..30761622815803.6395748-UTR-M-pyrifera_M_contig12965:3031..3076Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12965 3032..3076 +
1692277577.5082197-UTR-M-pyrifera_M_contig12965:3031..30761692277577.5082197-UTR-M-pyrifera_M_contig12965:3031..3076Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12965 3032..3076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.6279619-CDS-M-pyrifera_M_contig12965:2713..30311622815803.6279619-CDS-M-pyrifera_M_contig12965:2713..3031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 2714..3031 +
1692277577.492016-CDS-M-pyrifera_M_contig12965:2713..30311692277577.492016-CDS-M-pyrifera_M_contig12965:2713..3031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12965 2714..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12965.5800.1

>prot_M-pyrifera_M_contig12965.5800.1 ID=prot_M-pyrifera_M_contig12965.5800.1|Name=mRNA_M-pyrifera_M_contig12965.5800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MTRDVFLGDCNRWSKNSGFWFSTGRFPARIWTEQLRTSPPPQTRRNRSTA
EVSIASFNIYNEASVTITRYMTGSWKIRALFAEGRVGRAVLTLLKSPEQN
DKTGL*
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mRNA from alignment at M-pyrifera_M_contig12965:2577..3076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12965.5800.1 ID=mRNA_M-pyrifera_M_contig12965.5800.1|Name=mRNA_M-pyrifera_M_contig12965.5800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=500bp|location=Sequence derived from alignment at M-pyrifera_M_contig12965:2577..3076+ (Macrocystis pyrifera P11B4 male)
CTGCTGTTGCTGCTTGTTGTGCAACAACCAAGCAGTACCGTCGCGTCTTA
CGCGAGAGCTGAGGGATTTGCTTTGCTCTTTCCGGGATAGCACGTCTTTT
AGCAATTAGCATCCACGCAACGAGGCGGTGTTTTGTGATGACCCGGGATG
TGTTTCTCGGTGACTGCAACAGATGGAGCAAGAACTCTGGTTTTTGGTTC
AGCACAGGCAGGTTCCCAGCCCGTATTTGGACGGAACAACTCCGGACATC
ACCACCACCCCAAACGAGAAGGAACAGAAGTACAGCTGAGGTTTCGATAG
CTTCTTTCAATATATACAACGAAGCGTCGGTAACTATTACCAGGTATATG
ACTGGAAGTTGGAAAATTAGGGCGTTGTTTGCCGAAGGGAGAGTAGGTAG
AGCTGTCCTAACCCTGCTGAAGAGTCCAGAACAAAACGACAAGACTGGTC
TATAAAATATAAAACAAACAGTTCCATTTCGTTCTTTCTAGCTGCATGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12965:2577..3076+

>mRNA_M-pyrifera_M_contig12965.5800.1 ID=mRNA_M-pyrifera_M_contig12965.5800.1|Name=mRNA_M-pyrifera_M_contig12965.5800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig12965:2577..3076+ (Macrocystis pyrifera P11B4 male)
ATGACCCGGGATGTGTTTCTCGGTGACTGCAACAGATGGAGCAAGAACTC
TGGTTTTTGGTTCAGCACAGGCAGGTTCCCAGCCCGTATTTGGACGGAAC
AACTCCGGACATCACCACCACCCCAAACGAGAAGGAACAGAAGTACAGCT
GAGGTTTCGATAGCTTCTTTCAATATATACAACGAAGCGTCGGTAACTAT
TACCAGGTATATGACTGGAAGTTGGAAAATTAGGGCGTTGTTTGCCGAAG
GGAGAGTAGGTAGAGCTGTCCTAACCCTGCTGAAGAGTCCAGAACAAAAC
GACAAGACTGGTCTATAAATGACCCGGGATGTGTTTCTCGGTGACTGCAA
CAGATGGAGCAAGAACTCTGGTTTTTGGTTCAGCACAGGCAGGTTCCCAG
CCCGTATTTGGACGGAACAACTCCGGACATCACCACCACCCCAAACGAGA
AGGAACAGAAGTACAGCTGAGGTTTCGATAGCTTCTTTCAATATATACAA
CGAAGCGTCGGTAACTATTACCAGGTATATGACTGGAAGTTGGAAAATTA
GGGCGTTGTTTGCCGAAGGGAGAGTAGGTAGAGCTGTCCTAACCCTGCTG
AAGAGTCCAGAACAAAACGACAAGACTGGTCTATAA
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