mRNA_M-pyrifera_M_contig12962.5798.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12962.5798.1 vs. uniprot
Match: D8LQN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN1_ECTSI) HSP 1 Score: 746 bits (1926), Expect = 2.520e-246 Identity = 557/1274 (43.72%), Postives = 721/1274 (56.59%), Query Frame = 1
Query: 1 MQGHLEKLSTNAKSINHVLAALCGGLDRLERKIDTSSSQMEARLANIVHHMTGEADEDTMSAWGSLGS-----AGTPAEHVPSPGCRR--SFIATQAPDFGVTPVEPVELRGKNDTGGSGESVNDDLTT--GEVDIGDQVVPRGGDGRKQGGAGTPLVDDGDMRASRLRAELDTADGNMRQGDGAVVNGVVDSGDAVVG--RDKTEGESPPATHELEGTSSKQNGANPSGGN-----GASADNTVXXXXXXXXXXXXXXXXXXXSNSKTGSARGD-------VIVFETNNIADENLHLANRADQP--------RALDLQESITSGGSDARHVARLRWIWAFGRVCQLIRRRKRKKFEVMSQRATDRTVRMGSRVSVVEKRLDETNESLRTVDHVKDKLVQHSVDMKALNQKVADLSGLVGVEDRFKDLVQVTKAQIEALVRSGQIDLETKTRNSHEELEARLDGELKRHEDRLDDVDDRYEKSESALRLAEGIVGDAQSKMSIVSHDIAERERQLQMHEERLKSLENLKKTHQRRLSELRMRMEN---APARDILLEAEPEETDAERMDRLVKAAGIAAEFLSADLGTIVDNTA-------ATAALNNSTGEWEGELPGA-------EKILERLRSISFEASEFSRFC----STSWAAE----GTDGSVSGD------AIERAEALCGRIEDTLSAHGHADKCFVAS------------ERQTCLDDAASSGEYSLGDIPCPNGRRDLALRLSAARDALHPVIGERTSAGSLKVAILRLRASMTGNLGQAKNEVLFESQLRDLLIRVSELDSSIAHMKESVYDRGMDPDDDTEKGVGQGIDRDGLEERLTSKADVSWVQHELQRLWNALDSRVTPAAAVSTSTVGCG---DRSADFIRPQSAPSLNSHPEN--PEVAGEESQT--SSPAPSRSTVDPLSSPSTLTAGVMRDPGVEARTVGGHADHPRRPSFNEGLSLMNNLLRKTSRLEQQMASKADHGEVTRALSSVGIKLRNINIGIPVIEEALSNKIERKDLAKLAALVSSAG-----VPGGRAGTRSDENTSSPAVLASRLNSKFRCLSCDRPLPALGPPGPPKLGATGMFTAGAAAPARSPQRGS---RLQLVDA---GGDGNSSSRPGSPVTPMSSREETGDMIGWSGGSRILSPAVDEFTPGSSGTTQG--GLGSKDAGRRRRVGGGSAGAPADH---------PGRLEPVGANATGEQIAGIMSKYPRMMPPPSRIRTAAGGGIGSRPGSAVGGRF 3513
+QGHLEKLS+NA+SI+HVL LCGGLDRLE+K+DT+SSQ+EARLANIVHH++GEADEDTMSAW S+ AG+P + +P RR SF A + P + R ND S++++L + D + VV G G + L ++G R RA + TA GN + VV +G + + E ++P +L SS + +P + G + SNSK SAR + V+ + +++ E++ L A+ P A Q SI SG D+R +AR RWIWAFGR+CQL+RRRKRK+FE+MSQRATDRTVRMGSRVSVVEKRLDET E L V+ ++DK H+ +K LN+ V +L L+G+E++F +V TK +E +S +LET+ + H E++R+ +L+D+DDRY +SE ALR AE +G+ + E+RL SLENLKK HQRRLSELR+++E+ A + +E EPEETDAERM RL+K AG A EFL+ DL I+D+ ATAA N G++ A + L+ LR +S A E SR C S S AE G DG +G A+ R EALCG I+D LS DK +S ERQ L+ G + DI CPNGR+DL RL+AARDAL PVIGER+S GSL+VA L L AS+ NL + + L E + DL RVS LD+S++ +K+S++D G + G D LEERL KADVSWVQ ELQRLW+AL++R A + G G D RP+SAP N EN PE AG+E +SP+ + S V S PS+ + + A RR SFNEG SL+ +L++KTSRLEQQMA+KAD+ EV +AL+SVG KLR + I IP ++E L+NKIERKDLAKL ++VS+ G PGG G ++ + S AV+ASRLNSKFRCLSCDRPLPALGPPGPPKLGA+G+ AGA P RSPQ+ S RL+L A G D NS RPGSP T + E+ GD+ GW GS + PG + + G G KDAG RRR H PGRLEP+GAN GE +AG++S+YPRMMPPPSRIRTAAGGGIGSRP S+ GGR
Sbjct: 67 LQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQVEARLANIVHHISGEADEDTMSAWSSIAGGXXXXAGSPTDLGTAPSLRRRGSFGMQMA---SCSEDSPFDFR--NDK----ISLDEELANVGRDGDESEDVVTSFG-GVVERAKDVALQNEGGGRGEVERAAILTAPGNSSSAQATLKPTVVAAGPSASETLENTDEHQNPSEAKDLSSISSPTDTGSPREEDRELPTGLVSGGEDTNDLHPQRRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQESSVGGESV-LGEEAEVPGEGNDFVKTAFSPQASIDSGVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKMVEEKFKSDMTELETRLASGHRXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGEXXXXXXXXXXXXXXXXXXXXVDEDRLGSLENLKKAHQRRLSELRVQLESGTPAAGGAVPIETEPEETDAERMARLLKTAGTATEFLAEDLDKILDSNGGNAGDATATAADNAEANHELGQVLSARSSASNVDHALQELRHVSVNAVECSRLCNDVASASGQAERDEIGPDGGGAGSDSNVDAAVRRVEALCGHIQDLLSTQ---DKNISSSKNKAELSATGEIERQGSLEGNGGVG-LKIDDIVCPNGRKDLVQRLTAARDALLPVIGERSSVGSLRVAFLGLTASVRANLEEKQARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEGHHRYGSLDMDSDNGED---LEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGHGGDPSRPRSAPPTNYDKENHNPETAGQEEGDLDASPSQANSRVISGSLPSSALSTALGXXXXXXXXXXQGAVGGRRASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNGDGS--AVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSMAGAGTP-RSPQKTSSQQRLKLTAAEEPGADKNS--RPGSPATTSPAVEDVGDVAGWGRGSSNM------MIPGGASDMESAYGNGGKDAGARRRQ-------KQQHRQHHEMDQPPGRLEPLGAN--GEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSSGGRI 1302
BLAST of mRNA_M-pyrifera_M_contig12962.5798.1 vs. uniprot
Match: A0A6H5LPN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPN1_9PHAE) HSP 1 Score: 617 bits (1592), Expect = 1.930e-196 Identity = 528/1350 (39.11%), Postives = 670/1350 (49.63%), Query Frame = 1
Query: 1 MQGHLEKLSTNAKSINHVLAALCGGLDRLERKIDTSSSQMEARLANIVHHMTGEADEDTMSAWGSLGS-----AGTPAEHVPSPGCRR-SFIATQAPDFGVTPVEPVELRGKND----------TGGSGESVNDDLTTGEVDIGDQVVPRGGDGRKQGGAGTPLVDDGDMRASRLRAELDTADGNMRQGDGAVVNGVVDSG-DAVVGRDKT-EGESPPATHELEGTSSKQNGANPSGGN-----GASADNTVXXXXXXXXXXXXXXXXXXXSNSKTGSARGD-------VIVFETNNIADENLH---------------LANRADQP--------RALDLQESITSGGSDARHVARLRWIWAFGRVCQLIRRRKRKKFEVMSQRATDRTVRMGSRVSVVEKRLDETNESLRTVDHVKDKLVQHSVDMKALNQKVADLSGLVGVEDRFKDLVQVTKAQIEALVRSGQIDLETKTRNSHEELEARLDGELKRHEDRLDDVDDRYEKSESALRLAEGIVGDAQSKMSIVSHDIAERERQLQMHEERLKSLENLKKTHQRRLSELRMRMEN---APARDILLEAEPEETDAERMDRLVKAAGIAAEFLSADLGTIVDNTA-------ATAALNNSTGEWEGELPGA-------EKILERLRSISFEASEFSRFCS----TSWAAEGT----DGSVSGD------AIERAEALCGRIEDTLSAH-----GHADKCFVAS----ERQTCLDDAASSGEYSLGDIPCPNGRRDLALRLSAARDALHPVIGERTSAGSLKVAILRLRASMTGNLGQAKNEVLFESQLRDLLIRVSELDSSIAHMKESVYDRGMDPDDDTEKGVGQGIDRDGLEERLTSKADVSWVQHELQRLWNALDSRVTPAAAVSTSTVGCGDRSA---DFIRPQSAPSLNSHPEN--PEVAG--EESQTSSPAPSRSTVD----PLSSPSTLTAGVMRDPGVEARTVGGHADHPRRPSFNEGLSLMNNLLRKTSRLEQQ--------------------------------------------------------------MASKADHGEVTRALSSVGIKLRNINIGIPVIEEALSNKIERKDLAKLAALVSSAG-----VPGGRAGTRSDENTSSPAVLASRLNSKFRCLSCDRPLPALGPPGPPKLGATGMFTAGAAAPARSPQRGS---RLQLVDAGGDG-NSSSRPGSPVTPMSSREETGDMIGWSGGSRILSPAVDEFTPGSSGTTQG--GLGSKDAGRRRRVGGGSAGAPADH-----PGRLEPVGANATGEQIAGIMSKYPRMMPPPSRIRTAAGGGIGSRPGSAVG 3504
+Q HLEKLS+NA SI+HVL LCGGLDRLE+K+DT+SSQ+EARLANIVHH++GEADEDTMSAW SL AG+P E P RR Q G P P + R ND G G+ D +T+ E VV R D L ++G R RA + GN + VV + A +KT E ++P L S N +P + G + SNSK SAR + V+ + +++ L A+ P A Q SI SG D+R RWIWAFGR+CQL+RRRKRK+FE+MSQRATDR VRMGSRVSVVEKRLDET E L V+ ++DK H+ +K LN+ V +L L+G+E++ +V TK +E +S +LET+ +L+D+DDRY +SE ALR AE ELR+++E+ A + +E EPEET +RM RL+K A A EFL+ DL I+DN ATAA N G++ A + L+ LR +S +A E SR C+ S AEG DG +G A+ RAEALCGRI+D LSAH + K +++ ERQ L+ G L DI C NGR+DL RL+AARDAL PVIGER+S GSL+V +L L AS+ NL + + L E + DL RVSEL++S++ +K+S+ D G + G D LEERL KADVSWVQ ELQRLW+AL++R A + G G R D RP+S PS + EN PE AG E +SP+ + S V P S+ ST VGG RR S NEG SL+ +L++KTSRLEQQ MA+KAD+ EV +ALSSVG KLR + I IP ++E L+NKIERKDLAKL ++VS+ G PGG G + N S AV+ASRLNSKFRCLSCDRPLPALGPPGPPKLGA+G+ AGA P RSPQ+ RL+L A G ++RPGSP T + E+ GD+ GW G PG + + G G KDAG RR H PGRLEP+GAN GE +AG++S+YPRMMPPPSRIRTAAGGGIGSRP S+ G
Sbjct: 39 LQEHLEKLSSNASSIHHVLETLCGGLDRLEKKVDTNSSQVEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGTVPSLRRRGSFGMQMASCGEDP--PFDFR--NDKISLDEELAKVGRGGDESEDVVTSFEG-----VVERAKD--------VSLKNEGGRRGEVERAAILNTPGNSSSAQATLKTTVVATRPSASETLEKTVEHQNPSEAKYLSSIWSPTNAGSPREEDRDLPTGLVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQASSVXXXXXXXXXXXXXXXXXXESVLGEEAEGPGEGNDFVKTAFSPQASIDSGVLDSRQ----RWIWAFGRICQLVRRRKRKQFEIMSQRATDRAVRMGSRVSVVEKRLDETTEQLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKINGIVHATKKLMEEKFKSDMTELETRIXXXXXXXXXXXXXXXXXXXXKLEDMDDRYARSEEALRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRVQLESGTPAAGGAVPIETEPEETGEDRMARLLKTASTATEFLAEDLDKILDNNGGNAGDATATAAGNAEANHELGQVQSARSSDSNIDHALQELRHVSIDAVECSRLCNDVANASGQAEGDEIGPDGGGAGSDHNVDAAVCRAEALCGRIQDLLSAHEKNISSNKKKAELSATFEIERQGSLEGNGGMG-LKLDDIVCSNGRKDLVQRLTAARDALLPVIGERSSVGSLRVTLLGLTASVRANLEEKQARKLMEERWNDLRGRVSELNTSVSDIKDSLLDEGHHRYGSLDMDSDNGED---LEERLGCKADVSWVQRELQRLWDALNARTMAAVGALSPRTGAGVREGQGGDPSRPRSTPSTDYDKENHNPETAGQAEGDLEASPSQANSRVISGSLPSSALSTALGXXXXXXXXXQGAVGG-----RRASVNEGASLIKDLMKKTSRLEQQRLHERVLVMFHFSAMTVCCMFTPPLSLLPSWLGDATSRFDFFDFVLHPRPRYHAVWNPTVRKMATKADNEEVMKALSSVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHN--NGDSSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGASGLSIAGAGTP-RSPQKPKSQQRLKLTAAEEPGAEKNARPGSPATTSPAVEDVGDVAGWGG------XXXXXXXPGGASDMESTYGNGGKDAGARRXX---XXXHRQQHGMDQPPGRLEPLGAN--GEHMAGVLSRYPRMMPPPSRIRTAAGGGIGSRPSSSGG 1344 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12962.5798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12962.5798.1 >prot_M-pyrifera_M_contig12962.5798.1 ID=prot_M-pyrifera_M_contig12962.5798.1|Name=mRNA_M-pyrifera_M_contig12962.5798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1172bp MQGHLEKLSTNAKSINHVLAALCGGLDRLERKIDTSSSQMEARLANIVHHback to top mRNA from alignment at M-pyrifera_M_contig12962:210..6886- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12962.5798.1 ID=mRNA_M-pyrifera_M_contig12962.5798.1|Name=mRNA_M-pyrifera_M_contig12962.5798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6677bp|location=Sequence derived from alignment at M-pyrifera_M_contig12962:210..6886- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12962:210..6886- >mRNA_M-pyrifera_M_contig12962.5798.1 ID=mRNA_M-pyrifera_M_contig12962.5798.1|Name=mRNA_M-pyrifera_M_contig12962.5798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=7032bp|location=Sequence derived from alignment at M-pyrifera_M_contig12962:210..6886- (Macrocystis pyrifera P11B4 male)back to top |