mRNA_M-pyrifera_M_contig12941.5793.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12941.5793.1
Unique NamemRNA_M-pyrifera_M_contig12941.5793.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12941.5793.1 vs. uniprot
Match: A0A6H5L6N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N1_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 4.670e-45
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:  193 STLEEGEHLGLEGALSNGTTELKVMDNGDLVLSVDGKRVWMARGSRKRRGMVRWIWRRIRRQPTARPCAECLLTVSSSGHVELREKRKLLWSGGQPKTSKRWKKKKANVPT--VTLADDGDGRSNGGAVGTYRLIVTDDGNAIVKRGDSEVVWKALHK 660
            +TLE+   +GLE AL+NG+TEL+VM NGDLVL+ +G+ VW ARGS+KRR +V WIWR+IRRQ   RPC  C LTV+  G VELRE+ KLLWSGGQ +   R +K++       V  A+D +G    GA   +RL++TDDGNAI++R  SEVVWKAL++
Sbjct:  363 ATLEQRRSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQAVRPCTACRLTVAPEGRVELREEGKLLWSGGQRQKKARQQKRQTTQQRKRVPRANDREGADGSGA---FRLVITDDGNAILEREGSEVVWKALNR 517
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BLAST of mRNA_M-pyrifera_M_contig12941.5793.1 vs. uniprot
Match: D7G6H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H1_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 6.090e-31
Identity = 78/165 (47.27%), Postives = 98/165 (59.39%), Query Frame = 1 
Query:  181 AVKTSTLEEGEHLGLEGALSNGTTELKVMDNGDLVLSVDGKRVWMARGSRKRRGMVRWIWRRIRRQPTARPCAECLLTVSSSGHVELREKRKLLWSGGQPKTSKRWKKK-----KANVPTVTLADDGDGRSNGGAVGTYRLIVTDDGNAIVKRGDSEVVWKALHK 660
            A   +TLE+   +GLE ALSNG+TEL+VM NGDLVL+ +G+ VW ARGS+KRR +V WIWR+IRRQ                   ELRE+ KLLWSGGQ +             +  VP+    +  DG         +RLIVTDDGNAI++R  SEVVWKAL +
Sbjct:  362 AKMAATLEQTRSIGLEDALSNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQ-----------------QAELREEGKLLWSGGQRQKXXXXXXXXXXXXRKRVPSANDREGADGSD------MFRLIVTDDGNAILEREGSEVVWKALDR 503
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12941.5793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6N1_9PHAE4.670e-4555.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6H1_ECTSI6.090e-3147.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12941contigM-pyrifera_M_contig12941:2978..8613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-05_006180.1
Exons3
Model size663
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12941.5793.1prot_M-pyrifera_M_contig12941.5793.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12941 2978..8613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.1321187-CDS-M-pyrifera_M_contig12941:2977..32051622815803.1321187-CDS-M-pyrifera_M_contig12941:2977..3205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12941 2978..3205 -
1692277577.1772199-CDS-M-pyrifera_M_contig12941:2977..32051692277577.1772199-CDS-M-pyrifera_M_contig12941:2977..3205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12941 2978..3205 -
1622815803.145777-CDS-M-pyrifera_M_contig12941:5765..58941622815803.145777-CDS-M-pyrifera_M_contig12941:5765..5894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12941 5766..5894 -
1692277577.1860287-CDS-M-pyrifera_M_contig12941:5765..58941692277577.1860287-CDS-M-pyrifera_M_contig12941:5765..5894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12941 5766..5894 -
1622815803.1597881-CDS-M-pyrifera_M_contig12941:8307..86131622815803.1597881-CDS-M-pyrifera_M_contig12941:8307..8613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12941 8308..8613 -
1692277577.1935637-CDS-M-pyrifera_M_contig12941:8307..86131692277577.1935637-CDS-M-pyrifera_M_contig12941:8307..8613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12941 8308..8613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12941.5793.1

>prot_M-pyrifera_M_contig12941.5793.1 ID=prot_M-pyrifera_M_contig12941.5793.1|Name=mRNA_M-pyrifera_M_contig12941.5793.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
KKAREAEELAEEERRQEATRAAAHARDARAKQAENDKRAEDSRRRKRESE
ERKAAAAVVAAVKTSTLEEGEHLGLEGALSNGTTELKVMDNGDLVLSVDG
KRVWMARGSRKRRGMVRWIWRRIRRQPTARPCAECLLTVSSSGHVELREK
RKLLWSGGQPKTSKRWKKKKANVPTVTLADDGDGRSNGGAVGTYRLIVTD
DGNAIVKRGDSEVVWKALHK*
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mRNA from alignment at M-pyrifera_M_contig12941:2978..8613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12941.5793.1 ID=mRNA_M-pyrifera_M_contig12941.5793.1|Name=mRNA_M-pyrifera_M_contig12941.5793.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5636bp|location=Sequence derived from alignment at M-pyrifera_M_contig12941:2978..8613- (Macrocystis pyrifera P11B4 male)
AAAAAGGCTCGCGAAGCGGAAGAACTGGCAGAGGAGGAGCGGCGCCAAGA
GGCCACGCGAGCCGCCGCGCATGCCAGAGACGCCCGAGCGAAGCAAGCCG
AAAATGACAAGCGTGCCGAGGACAGCCGCAGGAGGAAGCGGGAGAGCGAG
GAGAGAAAAGCAGCCGCGGCGGTGGTGGCCGCGGTTAAGACCTCCACGCT
AGAAGAGGGCGAACATCTGGGACTGGAAGGGGCGCTCTCTAACGGGACTA
CGGAACTGAAGGTCATGGACAACGGTGACCTGGTGCTGTCCGTGGACGGC
AAGCGGGTGAGCGGGGAGCGGGGAGAGCATGGAGGCGGAATGGGGCTTGC
CGGCGGAGGGAGAGAAGGGGGGGGGGGGGGTGTATTCGATAGGAGAGATG
TATTCAATCTCTTGCGTGGCCGTATTCGTATGACCATAGACCCTCGCATC
CCTACAATGCCGGGACGGAGCGTACTCATGTGTTGCTTGCCTTAGTCATT
TGACCATTGACCACTCATACCTTTCGAGACGGAGCGAGGGGGGGGCGCGG
GGCGGGGGGGATCGGCCGTTCCCACCTGTCCTTTTTTTTTTTTTTTTTTT
GTTTGTTGCAATGTTCGGAGCTTCAAGGAACGCGGCCGTCGCGTGCACGT
TGCTGTCGGGCAGCAGGGCTTGAGGTAAAAGGGGTGTAGGGCCAGAGTCG
GGGTTTCGAGGGTGGAGGTAGGCGTTGTGTCTGGTTAAGATTCGCGACGA
CGGCGTTTTACGGGAGGGTGGGCATTGCACTCAAAACCTACTGTGAGCCC
GAATATATCTATATATATATATATTGTATATCCTGCTTCGTTTACATTCC
CTATTTGGTCATGATCACTACTGTATGTTCCTCCATACTACCAGGTACTG
CAGTAGTTTCGACGGGCTCAGGTTTTTGGAGGCGTGTTTTCTTTTTCTTT
TTCTTTTTTTCTTCGCCCCCCTTGCGCCCCCCTTGTGCCTTTTGTTTTGG
TCAGAGATGGGAGTGCGAGAGGGCGTCTGCGGATATCGTTGTCCTGGGTC
TCATTTTCGCGGCTGGTATTGGCTGGCCCTGGTTTTCCGAAAGCGTGTCT
GCCTCATCTGTGACCCTCTTTTTTTTTTCTCGTTTCTTGGCCCGATTGTC
AGAGGGTCTGTGAGGGATTCGTTTTCAGCAGAGCTGATTACGGATCATAC
CCCCACCCGCGGGTCGGGTCGGTAGTCCTTCGAATAAATTAAACTCACGG
GTCGGGTCGGGTCGGTCGGGCCAGAAGATGTTGGATCTCTCACGGGTCGG
GTGGAGTCTTGACCTGACGGGTAAAACCGCCCGGGTTTTTCTATGGGGGA
CTGAGAGAGTGCGTCTGAGGGACCGGATTCGCCGTGATGAGCCTCGATTT
TCGCGATTCTGCAGGAGGAGATGTGTGGGGTGACCGTTGCGATCTTGCCG
TGGGTTCTCACCTGGCTTATCTCCTCGTCGTGGTGGGGCGCACCGGGCGG
TTCTTCAGCTGCTCTTAACCCAATCGATCGAGTGTCATACACCGCTGTCT
GGACGGTAATATAAGGACCCTGTGTACACTAACAAGAAAACCAAGCGGTC
CTTGTGTTTTCGCTCAGAGTGGTGTATATAACTTTGTTTTTTGGGACCTA
GTAGGCACGGTGACAAAAAAATAGCGGTGTATAATATACAACTTTGTTTT
TGGGACCTAGGCACGGTGACAAGACAACGTTTGATATATACCAGCCGATA
GAGGTGCTGATAGCGTAGTCGTTCATCGCGTGTCCTGTGCGATTCCTCGC
GTTGTACTGCGAACAAACAAACAAACAAAAACAATCATGCCCCCAACCAA
GCGTATACTAGGCCGAACACGCCCTGCCGCGACGCCTCTGTGGCCGCGAG
GCGCATGCATCACAGCAGTGTGCGTGTGTGCGCTCGTGGTTCTCGTGTGG
TTCGGGCTACGGCCAGCTGAGCGCTGTTGGCTGCTGCCCTGTCGTGGGCC
GCTGTATCTGCAGACTTGGAGGGTTGGTGGTCCCTTCCGTTCTACGGGGA
CCGCACTAATGAAAGTCCGGTCCCACTTTAGTGCGGTGCCGCGCTAAAGT
GGGGAATCTCTCGCGCGAAACTGATTTTATCGCAATAAAATAGGACCCCG
AACGAAATAGAGCCGCACCAAAGTGGGACCCCAAACTGCTGTAAGGGAGA
CGAAATTTTCCGAATTCGGGGAGAAGAAAATTTACTGAATTCGTACTGAA
AAAAATAGAGGTAATTATTTATTTTCCGAATTCGGGGAGACGAAAGTTTA
ATTTATTCGTGCTAAAAGGAGAGGTAATTATTTGTTTTCCGAATTCGGGG
AGACGAAATAGAACTGCACCGTATACTACTGTGGGACCTTGAAGGCGCTG
TGATCGCCGTGTTTTGTCTTCCCCTCCTATTACGGGGGGCCATAGTTAAC
GGGACCAATTTTTGTTTGTAAAATAGGCAAATATATAGGTTTTTATGTAC
ACCATAGGTCCTGTTAACTATGGACCCCCGTAATAAGACGGTTCTTTGTT
CCCTCATGACGGGACTTTACCGTTTCCCTTTCTTGTGTTGTTTTTTTTGG
TTCATGCTCGACTCTCCCTTTTCCCGCCTCGTTAATCTTTCCCTTCCTGC
TCTGGCTTGCCTTGTCGTTTGTGTGTTGGTATTGTTTTCGTCTCATCCTC
CGATCGCGGCTACGCACAGGTCTGGATGGCTCGAGGGTCTCGGAAGCGTC
GCGGCATGGTACGGTGGATCTGGCGCAGAATAAGGCGGCAGCCCACGGCG
CGGCCGTGCGCCGAGTGCCTTCTGACCGTCTCCTCCTCAGGACACGTGGT
TAGTGCTGCGCTACCCTATATATTTATATATACCATGTATCACGATTTTT
TTCACCAACGTTCCGACGTGACCACACTGTGTTAGTATTTTTAAGAGGTT
TATGTACTCCTTCGATAAACTTCCAGTGTACATTTGTTTGCAAGAGGCTT
AGCTTGCCTGACAGAATCCGACTTTCCAATGTATGTAAATTTTTTGAGGG
AGAAGGAAACGAATTGTACCGGTTTACCCTTGCTCGTTTTTTTTATTTTT
TTATTATTCACGGTTGCTCGGAGCCAGCGAGCTTCCCCCACCTCCGCATG
AGCCTGACGCGAAGGGAAAATCGTTCCCGAGCTCATTCCGTATATCTTTC
TCCGTATCGTTCCCCAGACCGTTCCCCACTACCACCTTTCGTGCTACGAT
AGGGGTAGCTGTTATTCCGGGGGACCATGGTAAATAGGACCAAATATTGT
TCGTAAAAATAGGGAAATATATAGGTTTTTTTGTGTACCGTAGGTCCTAT
TTACTATGCCCCCCCGTAATATTAGTAGTTGTAGTATTTCTGAGGCTGCT
TCCTAAATTGAGGGTCCCAATATCTCTCATCCAAAACTTGATCTTGAGGA
AACATGCAGGCGTATCCCGAATAACTGTTATAAACAGGCGCTACCGAAAA
AAAATGTGCAACACGAATGGCAACTATTGCGGGGGGACCATAGTAGATAG
GACCTAGGGTACACACACAAACCTATATATTTACCTGTTTTTTCTAACAC
TATTTGGTCCTATTTACTGTGGTCCCCCGTACTAGTAGTAGTGGCCTTGT
GCGGGGTAGTCCCTCAGTTGGAGAGCTACGGCAGTCAGATATATTTGCCT
CGTGAGGCAAAAGGTGGGGTAGCACGTCTCGCCATTGACCCTGTTATTTT
TGCTACCCGGCCAAAGTGTTCTATTACAACACGGACGTATCACTTTAAGG
ATCTCAGCCGGTCAGCAAATGTTGCCTCAGAAGGCAAAAAGTGGTGTGGA
GTACCGCTACCTTGGGATTGCTGCTAAACGTCTTGCACACGTTGGACAGA
TCATCTGCAGATCATTCGATGATCTAGATCTTTCGAGGCAGATAGATCAT
CTCTTCCTGATCTTGCGGGATGTGGCTCATGCTGCCGGGTGGGAGCCGTA
TAAATCTGCGTAACCGACCACATGTTTTCGGGGTTGGATCTGTGCCATGC
AGATTCTGCACACTCTCTCACTACGGCAGGTTAGGAGCTAGATGATTTAC
ACCATGATCTAGATCATGATAGATGAGATGATGATAGATCATGATATATT
CGTGGTGTGAATGGCTCCACAGCATACCCCTAATTTGCGCGCGTCGGCCA
TTGATCCGTTTATTTTTTGGCAGCAAAACTATCCAACGCTAAGTGTAGGC
AGTTTAATTCCCGAGAACGTGGATGCATCCAGTCGTGTGCCGGGTAAAAA
TGCACGCTCGTGGTTGGCGGCAGCCTACGTGGAGTAAGCGTGAGATTTGC
TGTGCAGTGGTGGGTACAAGACGGTTTGTTTGCTGTTTTTGTCTACGAAC
TGGGAATTTTTGGTCTCTCGCATCAATGCGCACACACCCCTGAGTTCCGC
CGCTGTCGCGTATTGTTCCCCTCCATGAGGGTTTGTGCATGCTTCATCAT
GTCATATAAAACCCATACTGATCGGCAATAGTACGTGCGACCGAAACATC
ATTCACATGTGCGCAGCTTGCAAATGTGAGAATGGACGAAGTCCTCGACA
TCGCCGCTGATGTTCATATTTTGGATTGTAATTATTGTTCGTTTTAAGTT
TGATGTTGTAGGGTTAAGGCGGCTGATTGATGGTCGCGACTGCCGTGAGG
GGGGAGACTACAGGCACACACACCTCCGGACCTTGAAAAAATCGAAGACC
GTGCCATGCATGTTCCTTTCTTCGTCTGTCATTCACGCTTTGAGTACGAC
TGTCCGGCGTCCGAGTGAGTTTTCGATCGTGTAGGTTCCGGTTCTTCTTT
TTCTCTTTTTTGCCAGTGTGCAAGCGATCAAACATGTTATACACAGCAAT
TTCCGGTTACTTTTTCGATTGCTCTAGTTCCGTTTCAGTTTTTGCGTCCG
TTTCGCGCATCAACTACCACACCGGAGCTGCCGTTGTGTGAAATACCGAG
CAAACGAAAACCGTGCACTGTTCATTTTTTCTTTCTCGTCGTTCTTATCT
ACACGTTGTCCACGCCGCTTCAAACTGATTTATTCGATCGTTATACTTCT
TCCTTTTCATTTCATTTGTTGATAGAAGCAAATATTATACAAGAGCTACA
GGGCATACCGGGCAGAAGGAATTCACATACGTGGATTGAAATTTTCTTTT
TCGTCAGCTTATCTATGACTGATTTTTTTCATCTATTTTTTGCGGTCATG
TTTTCTTTGCCGTTGCGTTTGTGATAAAAGACGAGAGCTACGTGCGAGAA
TCTAGTGCAAGCGAAAATCGTTCGATTAATACATGTTTCTCTTCATCGCC
CCATTTTTTTTATTTTTTTTTTCGTTTTTCGCCGCACGCGCGTTAATTTT
CATTGCAGGAGCTGCGGGAAAAGCGGAAGCTCTTGTGGTCAGGCGGCCAG
CCGAAAACGTCCAAACGTTGGAAAAAGAAGAAGGCAAACGTACCCACCGT
TACTCTTGCCGACGATGGCGACGGCAGAAGCAATGGCGGTGCCGTCGGTA
CTTATCGGTTGATCGTCACCGACGACGGTAACGCCATCGTGAAGCGGGGG
GATTCCGAGGTGGTGTGGAAGGCGTTGCACAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12941:2978..8613-

>mRNA_M-pyrifera_M_contig12941.5793.1 ID=mRNA_M-pyrifera_M_contig12941.5793.1|Name=mRNA_M-pyrifera_M_contig12941.5793.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig12941:2978..8613- (Macrocystis pyrifera P11B4 male)
AAAAAGGCTCGCGAAGCGGAAGAACTGGCAGAGGAGGAGCGGCGCCAAGA
GGCCACGCGAGCCGCCGCGCATGCCAGAGACGCCCGAGCGAAGCAAGCCG
AAAATGACAAGCGTGCCGAGGACAGCCGCAGGAGGAAGCGGGAGAGCGAG
GAGAGAAAAGCAGCCGCGGCGGTGGTGGCCGCGGTTAAGACCTCCACGCT
AGAAGAGGGCGAACATCTGGGACTGGAAGGGGCGCTCTCTAACGGGACTA
CGGAACTGAAGGTCATGGACAACGGTGACCTGGTGCTGTCCGTGGACGGC
AAGCGGAAAAAGGCTCGCGAAGCGGAAGAACTGGCAGAGGAGGAGCGGCG
CCAAGAGGCCACGCGAGCCGCCGCGCATGCCAGAGACGCCCGAGCGAAGC
AAGCCGAAAATGACAAGCGTGCCGAGGACAGCCGCAGGAGGAAGCGGGAG
AGCGAGGAGAGAAAAGCAGCCGCGGCGGTGGTGGCCGCGGTTAAGACCTC
CACGCTAGAAGAGGGCGAACATCTGGGACTGGAAGGGGCGCTCTCTAACG
GGACTACGGAACTGAAGGTCATGGACAACGGTGACCTGGTGCTGTCCGTG
GACGGCAAGCGGGTCTGGATGGCTCGAGGGTCTCGGAAGCGTCGCGGCAT
GGTACGGTGGATCTGGCGCAGAATAAGGCGGCAGCCCACGGCGCGGCCGT
GCGCCGAGTGCCTTCTGACCGTCTCCTCCTCAGGACACGTGGTCTGGATG
GCTCGAGGGTCTCGGAAGCGTCGCGGCATGGTACGGTGGATCTGGCGCAG
AATAAGGCGGCAGCCCACGGCGCGGCCGTGCGCCGAGTGCCTTCTGACCG
TCTCCTCCTCAGGACACGTGGAGCTGCGGGAAAAGCGGAAGCTCTTGTGG
TCAGGCGGCCAGCCGAAAACGTCCAAACGTTGGAAAAAGAAGAAGGCAAA
CGTACCCACCGTTACTCTTGCCGACGATGGCGACGGCAGAAGCAATGGCG
GTGCCGTCGGTACTTATCGGTTGATCGTCACCGACGACGGTAACGCCATC
GTGAAGCGGGGGGATTCCGAGGTGGTGTGGAAGGCGTTGCACAAATAAGA
GCTGCGGGAAAAGCGGAAGCTCTTGTGGTCAGGCGGCCAGCCGAAAACGT
CCAAACGTTGGAAAAAGAAGAAGGCAAACGTACCCACCGTTACTCTTGCC
GACGATGGCGACGGCAGAAGCAATGGCGGTGCCGTCGGTACTTATCGGTT
GATCGTCACCGACGACGGTAACGCCATCGTGAAGCGGGGGGATTCCGAGG
TGGTGTGGAAGGCGTTGCACAAATAA
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