mRNA_M-pyrifera_M_contig1294.5792.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1294.5792.1
Unique NamemRNA_M-pyrifera_M_contig1294.5792.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1294.5792.1 vs. uniprot
Match: A0A6H5JZV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.800e-47
Identity = 107/248 (43.15%), Postives = 146/248 (58.87%), Query Frame = 1 
Query:    1 CKGFLIYGGLQRSVGQEPRCLGLKQPLP-NVIVTEEDAVPPPPEDARFIFVGVGVSVYNREMLQRNRLPLVNGFSQLITSKELTPE-----------EEKAGTVAR------RQPHQRPTVESTGAADRLGGAVPTSQAAHKSGVEELKGGARKGSAQEWEEVKREDVRDQIKAVLDYGRTRVQKQLDVSV----ELIRIAPGKLRHAASVQVDKAQEMPGILLSTNKRMIETGSKYVRDFLAEQEKK 678
            CKG L Y G QR+VGQEP+CLG K  LP N+I+            A+F F+GVGVSVYN+EML  NRLPLVNGFSQL+ SKE   +           E +A   AR      RQP      E++    R G AVPT+ +  +SGV         G   E E       R Q++A++ Y   R++KQ+++++    EL ++ PGKLR A  VQ +K QEMP +LL T+KRM+++G+K+VR++L EQE+K
Sbjct:   20 CKGILAYAGQQRAVGQEPQCLGFKTALPPNIIIXXXXXXXXXXXXAKFFFIGVGVSVYNKEMLSNNRLPLVNGFSQLVVSKEEERDKTDALHNGRIGEYEAAAAARHHGRGNRQPQPHTAAEASAQGGRQGAAVPTTLS-QRSGVA--------GDGVE-ERSSSTTGRKQVEALMSYAVGRIRKQVEITMQVTDELKKLTPGKLREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEEQERK 257
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BLAST of mRNA_M-pyrifera_M_contig1294.5792.1 vs. uniprot
Match: D8LTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV3_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.180e-28
Identity = 77/196 (39.29%), Postives = 113/196 (57.65%), Query Frame = 1 
Query:  154 VGVSVYNREMLQRNRLPLVNGFSQLITSKELTPEEEKAGTVARR-----------------QPHQRPTVESTGAADRLGGAVPTSQAAHKSGVEELKGGARKGSAQEWEEVKREDVRDQIKAVLDYGRTRVQKQLDVSV----ELIRIAPGKLRHAASVQVDKAQEMPGILLSTNKRMIETGSKYVRDFLAEQEKK 678
            +GVSVYN+EML  NRLPLVNGFSQL+ SKE   ++  A    R+                 QP      E+     R G AVPT+ +  +SGV     G  +GS+           R Q++A++ Y   R++KQ+D+++    EL ++ P K+R A  VQ +K QEMP +LL T+KRM+++G+K+VR++L EQE+K
Sbjct:    1 MGVSVYNKEMLSNNRLPLVNGFSQLLVSKEEEKDKADARHNGRKGEHEADXXXXXXXRGHLQPQPHAAAEAPAQGGRQGAAVPTTLS-QRSGV--AGDGVEEGSSST-------TGRKQVEALMAYAVGRIRKQVDITIQVTDELKKLTPEKVREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEEQERK 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1294.5792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZV9_9PHAE1.800e-4743.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTV3_ECTSI8.180e-2839.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1294contigM-pyrifera_M_contig1294:4390..6023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002620.1
Exons2
Model size684
Cds size684
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815803.0580032-CDS-M-pyrifera_M_contig1294:4389..49611622815803.0580032-CDS-M-pyrifera_M_contig1294:4389..4961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1294 4390..4961 -
1692277577.1576903-CDS-M-pyrifera_M_contig1294:4389..49611692277577.1576903-CDS-M-pyrifera_M_contig1294:4389..4961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1294 4390..4961 -
1622815803.0807838-CDS-M-pyrifera_M_contig1294:5911..60231622815803.0807838-CDS-M-pyrifera_M_contig1294:5911..6023Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1294 5912..6023 -
1692277577.1688926-CDS-M-pyrifera_M_contig1294:5911..60231692277577.1688926-CDS-M-pyrifera_M_contig1294:5911..6023Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1294 5912..6023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1294.5792.1prot_M-pyrifera_M_contig1294.5792.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1294 4390..6023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1294.5792.1

>prot_M-pyrifera_M_contig1294.5792.1 ID=prot_M-pyrifera_M_contig1294.5792.1|Name=mRNA_M-pyrifera_M_contig1294.5792.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
CKGFLIYGGLQRSVGQEPRCLGLKQPLPNVIVTEEDAVPPPPEDARFIFV
GVGVSVYNREMLQRNRLPLVNGFSQLITSKELTPEEEKAGTVARRQPHQR
PTVESTGAADRLGGAVPTSQAAHKSGVEELKGGARKGSAQEWEEVKREDV
RDQIKAVLDYGRTRVQKQLDVSVELIRIAPGKLRHAASVQVDKAQEMPGI
LLSTNKRMIETGSKYVRDFLAEQEKKK*
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mRNA from alignment at M-pyrifera_M_contig1294:4390..6023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1294.5792.1 ID=mRNA_M-pyrifera_M_contig1294.5792.1|Name=mRNA_M-pyrifera_M_contig1294.5792.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1634bp|location=Sequence derived from alignment at M-pyrifera_M_contig1294:4390..6023- (Macrocystis pyrifera P11B4 male)
TGCAAGGGTTTTCTCATTTACGGCGGCCTGCAGAGATCGGTGGGTCAAGA
GCCGCGCTGTCTGGGCTTGAAGCAGCCCTTACCGAACGTCATAGTCACCG
AGGAGGATGCGGGTGAGACCGACACAAATCATCCTTCGGCGCAAAGCAAA
ATCACGATTCGTGACATTTGTAAATTAGCGTTTTGTCGCGTTGAAAGTAG
CAAATTCGTGTGTTTCTTGTCACGAATCGTGTCGCGACCTCATCTATGCT
TTATTTCCAAGAGAAACTATCACAACATACGGTATCGCGATTCGTGGCAT
TTGTTTTGCTCGTCAGGAATGACCCTATGTACACGAAAAACTTCCCGCGC
CGACTGTCCAATTCACCATACTTTTTCGGGACGTGAAAACAAACCGCGGG
TACCGATTTTGGTGATCGCGCTCTTTTTTTTTGCCTGGGCAGTGTGGCAT
CACCTCGCCTGTGTTGTTTCTCCGAGGGAACCACTGCTCGGCTGGCAGCC
GTTTCACCGGCTCAGCCAACGCGCAAAATACCCTGCCCTACGCTGGCATG
AGCCGAGCAGCAGAAAATCTGTGGTATGCGACTCTTCCCGGAACCATCTA
CTCCTCGTTTCGAATACCTTTACCCAAAAACAGTTACAACCCTGTCCGGC
ACGTAAGGAAAAATTAGTTATTCATGCGAATACGTACGTTTCCTGACAGG
GTGTGGTGTGGCATTTGTCTTTACCTCACCCTGAGTACGCTCTGATGTGC
TTCGGGTCATTTCTAGCGAACGCGAAACAACACGCTTCGCGATTTTTGTA
TGTCGGCGTTATGTCGCGTTTTCCGCAAACAAAAAACACTTTTTTTGTCA
CGAATCGCAACATGAATCGTTTCATTCCTGTTTTTTTTTCCAAAAAAAAT
CGGTTGTCACCATTCGTGACAGGTGTGCACGATCACGGTTCGCGAAAAAT
GTGACGTCTTTATGTTGTCACGATTTTGGACACTTTTTTGCTTGTTTACG
TACGGCCTGACCCTTACAAGTACGTGCTATCATGCGCTTTTTTGCTGTTT
TGGCCGGCGCAGTACCACCACCACCCGAGGACGCGCGGTTCATTTTTGTC
GGAGTGGGCGTATCCGTGTACAACAGGGAAATGCTGCAGCGCAACCGCCT
TCCACTGGTGAACGGTTTCAGCCAGCTCATCACCTCGAAGGAGCTTACCC
CGGAAGAAGAAAAAGCCGGCACCGTCGCCCGCCGACAGCCACACCAACGA
CCAACGGTAGAATCCACGGGGGCAGCAGATCGCTTGGGCGGGGCGGTTCC
GACGAGCCAAGCGGCACACAAAAGCGGGGTCGAGGAGCTCAAGGGGGGCG
CGCGGAAGGGAAGCGCGCAAGAGTGGGAAGAGGTTAAGCGGGAGGATGTT
CGGGATCAGATTAAGGCGGTGCTCGACTACGGCCGCACCCGCGTGCAGAA
GCAGTTAGACGTGTCGGTGGAGCTGATCCGCATCGCCCCGGGAAAGCTTC
GCCATGCCGCAAGCGTTCAGGTGGACAAGGCACAGGAGATGCCCGGAATT
TTATTGAGCACCAATAAAAGGATGATTGAGACGGGGTCGAAATACGTGCG
AGATTTCCTCGCCGAGCAAGAGAAGAAGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1294:4390..6023-

>mRNA_M-pyrifera_M_contig1294.5792.1 ID=mRNA_M-pyrifera_M_contig1294.5792.1|Name=mRNA_M-pyrifera_M_contig1294.5792.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig1294:4390..6023- (Macrocystis pyrifera P11B4 male)
TGCAAGGGTTTTCTCATTTACGGCGGCCTGCAGAGATCGGTGGGTCAAGA
GCCGCGCTGTCTGGGCTTGAAGCAGCCCTTACCGAACGTCATAGTCACCG
AGGAGGATGCGGTGCAAGGGTTTTCTCATTTACGGCGGCCTGCAGAGATC
GGTGGGTCAAGAGCCGCGCTGTCTGGGCTTGAAGCAGCCCTTACCGAACG
TCATAGTCACCGAGGAGGATGCGGTACCACCACCACCCGAGGACGCGCGG
TTCATTTTTGTCGGAGTGGGCGTATCCGTGTACAACAGGGAAATGCTGCA
GCGCAACCGCCTTCCACTGGTGAACGGTTTCAGCCAGCTCATCACCTCGA
AGGAGCTTACCCCGGAAGAAGAAAAAGCCGGCACCGTCGCCCGCCGACAG
CCACACCAACGACCAACGGTAGAATCCACGGGGGCAGCAGATCGCTTGGG
CGGGGCGGTTCCGACGAGCCAAGCGGCACACAAAAGCGGGGTCGAGGAGC
TCAAGGGGGGCGCGCGGAAGGGAAGCGCGCAAGAGTGGGAAGAGGTTAAG
CGGGAGGATGTTCGGGATCAGATTAAGGCGGTGCTCGACTACGGCCGCAC
CCGCGTGCAGAAGCAGTTAGACGTGTCGGTGGAGCTGATCCGCATCGCCC
CGGGAAAGCTTCGCCATGCCGCAAGCGTTCAGGTGGACAAGGCACAGGAG
ATGCCCGGAATTTTATTGAGCACCAATAAAAGGATGATTGAGACGGGGTC
GAAATACGTGCGAGATTTCCTCGCCGAGCAAGAGAAGAAGAAGTGATACC
ACCACCACCCGAGGACGCGCGGTTCATTTTTGTCGGAGTGGGCGTATCCG
TGTACAACAGGGAAATGCTGCAGCGCAACCGCCTTCCACTGGTGAACGGT
TTCAGCCAGCTCATCACCTCGAAGGAGCTTACCCCGGAAGAAGAAAAAGC
CGGCACCGTCGCCCGCCGACAGCCACACCAACGACCAACGGTAGAATCCA
CGGGGGCAGCAGATCGCTTGGGCGGGGCGGTTCCGACGAGCCAAGCGGCA
CACAAAAGCGGGGTCGAGGAGCTCAAGGGGGGCGCGCGGAAGGGAAGCGC
GCAAGAGTGGGAAGAGGTTAAGCGGGAGGATGTTCGGGATCAGATTAAGG
CGGTGCTCGACTACGGCCGCACCCGCGTGCAGAAGCAGTTAGACGTGTCG
GTGGAGCTGATCCGCATCGCCCCGGGAAAGCTTCGCCATGCCGCAAGCGT
TCAGGTGGACAAGGCACAGGAGATGCCCGGAATTTTATTGAGCACCAATA
AAAGGATGATTGAGACGGGGTCGAAATACGTGCGAGATTTCCTCGCCGAG
CAAGAGAAGAAGAAGTGA
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