mRNA_M-pyrifera_M_contig102685.578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102685.578.1
Unique NamemRNA_M-pyrifera_M_contig102685.578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: A0A1U7RR99_ALLSI (pre-mRNA-splicing factor CWC25 homolog n=9 Tax=Archosauria TaxID=8492 RepID=A0A1U7RR99_ALLSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.860e-7
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKLLS-LEK 243
            V+ EEYL G+ VD      T+E+D   +S  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E L S LEK
Sbjct:   81 VNREEYLMGRPVDKYVFEKTEEKDAGCSSETGLLPGSIFAPTGANSVLDIANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKELLQSSLEK 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: A0A8B9VBI3_9AVES (Uncharacterized protein n=1 Tax=Anas zonorhyncha TaxID=75864 RepID=A0A8B9VBI3_9AVES)

HSP 1 Score: 56.6 bits (135), Expect = 4.320e-7
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIRE 222
            V+ EEYL G+ VD      T+++D   ++  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E
Sbjct:   29 VNREEYLMGRPVDKYVFEKTEDKDAGCSNETGLLPGSIFAKSGANSVLDMANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKE 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: A0A151P5E8_ALLMI (Pre-mRNA-splicing factor CWC25-like protein n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151P5E8_ALLMI)

HSP 1 Score: 59.3 bits (142), Expect = 5.110e-7
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKLLS-LEK 243
            V+ EEYL G+ VD      T+++D   +S  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E L S LEK
Sbjct:  231 VNREEYLMGRPVDKYVFEKTEDKDAGCSSETGLLPGSIFAPTGANSVLDIANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKELLQSSLEK 323
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: Q6DFK9_XENLA (CWC25 spliceosome-associated protein homolog S homeolog n=3 Tax=Xenopus laevis TaxID=8355 RepID=Q6DFK9_XENLA)

HSP 1 Score: 58.9 bits (141), Expect = 6.050e-7
Identity = 39/87 (44.83%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVDT------KEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKL 228
            V+ EEYL G+ VD       K+ +   +S  GL     F A  AN T +  NK+ EDPLF I+KRE E    +  NPVKMK IRE L
Sbjct:   81 VNREEYLLGRPVDKYILDKMKDPESGPSSETGLLPGSIFSAAGANSTLDMANKIREDPLFMIRKREDEKKREVLKNPVKMKKIREML 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: Q6DFD5_XENLA (AF549897-prov protein n=2 Tax=Xenopus laevis TaxID=8355 RepID=Q6DFD5_XENLA)

HSP 1 Score: 58.5 bits (140), Expect = 8.180e-7
Identity = 42/93 (45.16%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVDT------KEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKLLS-LEK 243
            V+ EEYL G+ VD       KE +   +S  GL     F     N T +  NK+ EDPLF I+KRE E    +  NPVKMK IRE L S LEK
Sbjct:   81 VNREEYLLGRPVDKYILDKMKEPETGPSSDTGLLPGSIFSGAGGNSTLDLANKIREDPLFMIRKREDEKKREVLKNPVKMKKIREMLQSSLEK 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: UPI000522729B (pre-mRNA-splicing factor CWC25 homolog n=1 Tax=Opisthocomus hoazin TaxID=30419 RepID=UPI000522729B)

HSP 1 Score: 58.2 bits (139), Expect = 1.180e-6
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKL 228
            V+ EEYL G+ VD      T+++D   +S  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E L
Sbjct:  115 VNREEYLMGRPVDKYVFEKTEDKDAGCSSETGLLPGSIFAKTGANSVLDMANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKELL 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: L8HCP8_ACACA (CCDC49 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCP8_ACACA)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-6
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 SSEEYLTGKAV-DTKEEDIA-------------AASTLGLFQ-ARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKLLSLEKGKGKHKK 264
            S +E+L G+A  D + E  A             A++ LGLF   +  +  QEAWN++ EDPL  I+++EKE+ + +  NP KM+ I+++LL +EK +   KK
Sbjct:   82 SGDEFLKGRAATDAQIEQAAKPEAQQAEPASAQASAGLGLFDNEKKVSAEQEAWNRIREDPLLEIKRKEKEAKEVVTKNPAKMQRIKDRLLGMEKERKMAKK 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: A0A093BLG3_CHAPE (Pre-mRNA-splicing factor CWC25 (Fragment) n=2 Tax=Chaetura pelagica TaxID=8897 RepID=A0A093BLG3_CHAPE)

HSP 1 Score: 57.4 bits (137), Expect = 1.880e-6
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKL 228
            V+ EEYL G+ VD       +E+D   +S  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E L
Sbjct:   18 VNREEYLMGRPVDKYIFEKAEEKDAGCSSETGLLPGSIFAKSGANSVLDMANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKELL 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: A0A8B9NSD7_9AVES (CWC25 spliceosome associated protein homolog n=2 Tax=Accipitrinae TaxID=8955 RepID=A0A8B9NSD7_9AVES)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-6
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKL 228
            V+ EEYL G+ VD      T+++D   ++  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E L
Sbjct:   29 VNREEYLMGRPVDKYVFEKTEDKDAGCSNETGLLPGSIFAKTGANSVLDMANKIREDPLFMIRKREEEKKREVLNNPVKMKRIKELL 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Match: A0A7K9I5T1_9AVES (CWC25 factor (Fragment) n=1 Tax=Bucco capensis TaxID=135168 RepID=A0A7K9I5T1_9AVES)

HSP 1 Score: 57.4 bits (137), Expect = 2.090e-6
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 VSSEEYLTGKAVD------TKEEDIAAASTLGL-----FQARAANPTQEAWNKVMEDPLFAIQKREKESLDSIKSNPVKMKHIREKL 228
            V+ EEYL G+ VD       +E+D   +S  GL     F    AN   +  NK+ EDPLF I+KRE+E    + +NPVKMK I+E L
Sbjct:   75 VNREEYLMGRPVDKYVFEKAEEKDAGCSSETGLLPGSIFAKSGANSVLDMANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKELL 161
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102685.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U7RR99_ALLSI1.860e-745.16pre-mRNA-splicing factor CWC25 homolog n=9 Tax=Arc... [more]
A0A8B9VBI3_9AVES4.320e-741.18Uncharacterized protein n=1 Tax=Anas zonorhyncha T... [more]
A0A151P5E8_ALLMI5.110e-744.09Pre-mRNA-splicing factor CWC25-like protein n=1 Ta... [more]
Q6DFK9_XENLA6.050e-744.83CWC25 spliceosome-associated protein homolog S hom... [more]
Q6DFD5_XENLA8.180e-745.16AF549897-prov protein n=2 Tax=Xenopus laevis TaxID... [more]
UPI000522729B1.180e-642.53pre-mRNA-splicing factor CWC25 homolog n=1 Tax=Opi... [more]
L8HCP8_ACACA1.270e-636.27CCDC49 protein n=1 Tax=Acanthamoeba castellanii st... [more]
A0A093BLG3_CHAPE1.880e-642.53Pre-mRNA-splicing factor CWC25 (Fragment) n=2 Tax=... [more]
A0A8B9NSD7_9AVES1.980e-641.38CWC25 spliceosome associated protein homolog n=2 T... [more]
A0A7K9I5T1_9AVES2.090e-642.53CWC25 factor (Fragment) n=1 Tax=Bucco capensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102685contigM-pyrifera_M_contig102685:3..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.0
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog38654.XP_006022631.1
Preferred nameCWC25
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018992,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034641,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048856,GO:0051321,GO:0070013,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.Pre-mRNA splicing factor
EggNOG OGs39SK2@33154,3BKH9@33208,3D3IT@33213,487BV@7711,493TR@7742,KOG3869@1,KOG3869@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.859869-CDS-M-pyrifera_M_contig102685:2..5631622815530.859869-CDS-M-pyrifera_M_contig102685:2..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102685 3..563 -
1692277451.439174-CDS-M-pyrifera_M_contig102685:2..5631692277451.439174-CDS-M-pyrifera_M_contig102685:2..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102685 3..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102685.578.1prot_M-pyrifera_M_contig102685.578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102685 3..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102685.578.1

>prot_M-pyrifera_M_contig102685.578.1 ID=prot_M-pyrifera_M_contig102685.578.1|Name=mRNA_M-pyrifera_M_contig102685.578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
VSSEEYLTGKAVDTKEEDIAAASTLGLFQARAANPTQEAWNKVMEDPLFA
IQKREKESLDSIKSNPVKMKHIREKLLSLEKGKGKHKKERKREKKEKRER
KERKRRERHREKDREPRGDSRDGRDRKRERDHDDRRRSRDEDLRNHSRRS
RSPEEKHRGERESRRGSKSPRRENKRESRSPRRESKR
back to top

mRNA from alignment at M-pyrifera_M_contig102685:3..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102685.578.1 ID=mRNA_M-pyrifera_M_contig102685.578.1|Name=mRNA_M-pyrifera_M_contig102685.578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig102685:3..563- (Macrocystis pyrifera P11B4 male)
GTTTCGTCGGAGGAGTACCTCACAGGCAAGGCGGTGGACACGAAGGAGGA
GGACATTGCGGCGGCCAGCACTCTGGGCCTCTTCCAGGCGCGTGCAGCGA
ACCCCACACAAGAGGCGTGGAACAAAGTGATGGAGGATCCACTCTTCGCC
ATCCAGAAGAGAGAGAAAGAGAGCTTGGACTCTATCAAGAGCAACCCCGT
GAAGATGAAGCACATCAGAGAGAAACTACTCTCCTTGGAGAAGGGAAAGG
GAAAGCACAAGAAGGAGAGAAAGCGAGAGAAGAAAGAGAAGCGCGAGAGG
AAAGAGAGGAAGAGGAGAGAGCGACACAGAGAGAAAGATAGAGAGCCACG
GGGAGATTCTCGTGACGGGAGAGATCGCAAGAGGGAGCGTGACCACGACG
ACAGAAGGAGAAGCCGTGACGAGGATCTTCGAAACCACTCCAGGAGGAGC
AGAAGCCCAGAAGAGAAACATCGAGGAGAGAGGGAGAGCAGGAGGGGGAG
CAAGAGCCCAAGGAGAGAGAACAAGAGGGAGAGCAGGAGCCCAAGGAGAG
AGAGCAAGAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102685:3..563-

>mRNA_M-pyrifera_M_contig102685.578.1 ID=mRNA_M-pyrifera_M_contig102685.578.1|Name=mRNA_M-pyrifera_M_contig102685.578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig102685:3..563- (Macrocystis pyrifera P11B4 male)
GTTTCGTCGGAGGAGTACCTCACAGGCAAGGCGGTGGACACGAAGGAGGA
GGACATTGCGGCGGCCAGCACTCTGGGCCTCTTCCAGGCGCGTGCAGCGA
ACCCCACACAAGAGGCGTGGAACAAAGTGATGGAGGATCCACTCTTCGCC
ATCCAGAAGAGAGAGAAAGAGAGCTTGGACTCTATCAAGAGCAACCCCGT
GAAGATGAAGCACATCAGAGAGAAACTACTCTCCTTGGAGAAGGGAAAGG
GAAAGCACAAGAAGGAGAGAAAGCGAGAGAAGAAAGAGAAGCGCGAGAGG
AAAGAGAGGAAGAGGAGAGAGCGACACAGAGAGAAAGATAGAGAGCCACG
GGGAGATTCTCGTGACGGGAGAGATCGCAAGAGGGAGCGTGACCACGACG
ACAGAAGGAGAAGCCGTGACGAGGATCTTCGAAACCACTCCAGGAGGAGC
AGAAGCCCAGAAGAGAAACATCGAGGAGAGAGGGAGAGCAGGAGGGGGAG
CAAGAGCCCAAGGAGAGAGAACAAGAGGGAGAGCAGGAGCCCAAGGAGAG
AGAGCAAGAGGGTTTCGTCGGAGGAGTACCTCACAGGCAAGGCGGTGGAC
ACGAAGGAGGAGGACATTGCGGCGGCCAGCACTCTGGGCCTCTTCCAGGC
GCGTGCAGCGAACCCCACACAAGAGGCGTGGAACAAAGTGATGGAGGATC
CACTCTTCGCCATCCAGAAGAGAGAGAAAGAGAGCTTGGACTCTATCAAG
AGCAACCCCGTGAAGATGAAGCACATCAGAGAGAAACTACTCTCCTTGGA
GAAGGGAAAGGGAAAGCACAAGAAGGAGAGAAAGCGAGAGAAGAAAGAGA
AGCGCGAGAGGAAAGAGAGGAAGAGGAGAGAGCGACACAGAGAGAAAGAT
AGAGAGCCACGGGGAGATTCTCGTGACGGGAGAGATCGCAAGAGGGAGCG
TGACCACGACGACAGAAGGAGAAGCCGTGACGAGGATCTTCGAAACCACT
CCAGGAGGAGCAGAAGCCCAGAAGAGAAACATCGAGGAGAGAGGGAGAGC
AGGAGGGGGAGCAAGAGCCCAAGGAGAGAGAACAAGAGGGAGAGCAGGAG
CCCAAGGAGAGAGAGCAAGAGG
back to top