mRNA_M-pyrifera_M_contig128630.5748.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128630.5748.1
Unique NamemRNA_M-pyrifera_M_contig128630.5748.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A2E7K729_9PLAN (Cadherin domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K729_9PLAN)

HSP 1 Score: 326 bits (836), Expect = 1.420e-106
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
Query:    1 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTLQ 498
            TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTLQ
Sbjct:  308 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTLQ 473          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A518ADI6_9PLAN (Ig domain protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ADI6_9PLAN)

HSP 1 Score: 275 bits (702), Expect = 1.540e-86
Identity = 134/166 (80.72%), Postives = 154/166 (92.77%), Query Frame = 1
Query:    1 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTLQ 498
            TEWTVQRG+LDT+ A H KGA+V QVPEYLQALYDYQ IAD SPFAKPVPDKVYQLELRDIGKQT++RGN+LDLSLPL+GINPSQ+APK++VKSDL GIVAQAGKLQWAPA EQK G +PVT++ATQGDQ VE++FEIEF+EKNTAP+LETV++VTAYQ RPL+LQ
Sbjct:  308 TEWTVQRGLLDTKAAPHVKGASVVQVPEYLQALYDYQMIADASPFAKPVPDKVYQLELRDIGKQTVVRGNTLDLSLPLSGINPSQAAPKVTVKSDLPGIVAQAGKLQWAPAKEQKVGRYPVTVSATQGDQTVEKSFEIEFLEKNTAPQLETVASVTAYQARPLSLQ 473          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A2E2C8T6_9PLAN (Cadherin domain-containing protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C8T6_9PLAN)

HSP 1 Score: 228 bits (580), Expect = 1.810e-68
Identity = 106/165 (64.24%), Postives = 141/165 (85.45%), Query Frame = 1
Query:    1 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            +EW VQRG+LDT+P +H KGAAVTQ P+YLQALYDY+ IA  SPFAKPVPDKVY+L+L++IGKQT++RG++L+L+LPL G+NPS + P+I+VKSDL G V++A KL+W+P  EQK G +PVT+T  Q  QKVERTF+++F+E+NT PK+E VS++ AYQT+PLTL
Sbjct:  308 SEWRVQRGMLDTKPVAHAKGAAVTQAPQYLQALYDYRLIARVSPFAKPVPDKVYKLDLKEIGKQTVVRGDTLNLTLPLEGVNPSLANPQITVKSDLPGFVSEADKLKWSPGKEQKPGNYPVTVTVNQEGQKVERTFQLDFLEQNTPPKIEAVSSIIAYQTQPLTL 472          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A3D3R8F5_9PLAN (Cadherin domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R8F5_9PLAN)

HSP 1 Score: 221 bits (562), Expect = 1.060e-67
Identity = 102/165 (61.82%), Postives = 139/165 (84.24%), Query Frame = 1
Query:    1 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            TEW VQRG+L+T+P +H KGA V+Q P+YLQALYDY+ IA +SPFAKPVPDKVY+L+L++IGKQT++RGNSL+L++PL G+NP+ + P+I+VKS L G+ A+  KL+W+P  EQK G +PVTIT  Q  QKVERTF+++F+E+NT PK+ETV++  AYQT+PL+L
Sbjct:  111 TEWRVQRGMLNTKPVAHAKGAIVSQAPQYLQALYDYRLIAQSSPFAKPVPDKVYKLDLKEIGKQTVVRGNSLNLTIPLEGVNPALANPQITVKSALPGLTAETDKLKWSPDKEQKPGNYPVTITVIQEGQKVERTFQLDFLEQNTPPKIETVTSAVAYQTQPLSL 275          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A6CD17_9PLAN (Cadherin domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CD17_9PLAN)

HSP 1 Score: 222 bits (566), Expect = 2.060e-66
Identity = 103/165 (62.42%), Postives = 139/165 (84.24%), Query Frame = 1
Query:    1 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            TEW VQRG+L+T+P +H KGA VTQ P+YLQALYDY+ IA +SPFAKPVPDKVY+L+L++IGKQT++RGNSL+L++PL G+NP+ + P+I+VKS L G+ A+  KL+W+P  EQK G +PVTIT  Q  QKVERTF+++F+E+NT PK+ETV++  AYQT+PL+L
Sbjct:  308 TEWRVQRGMLNTKPVAHAKGAIVTQAPQYLQALYDYRLIAQSSPFAKPVPDKVYKLDLKEIGKQTVVRGNSLNLTIPLEGVNPALANPQITVKSALPGLTAETDKLKWSPDKEQKPGNYPVTITVIQEGQKVERTFQLDFLEQNTPPKIETVTSAVAYQTQPLSL 472          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A517VKI0_9PLAN (Ig domain protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VKI0_9PLAN)

HSP 1 Score: 216 bits (550), Expect = 4.600e-64
Identity = 98/165 (59.39%), Postives = 135/165 (81.82%), Query Frame = 1
Query:    1 TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            +EW VQRG+LDT+P+ H KGAAVTQ P YLQAL+DY+ IA  +PFAKPVPDKVY+LEL++IGKQT++RGN+L+L++PL G+NP+ + P+I+VKSDL G+  +A KL W+P  EQK G +PVT+   Q  QKVERTF+++F+E+NTAP++E  ++  AYQT+P +L
Sbjct:  308 SEWRVQRGMLDTKPSVHTKGAAVTQAPPYLQALFDYRLIAQANPFAKPVPDKVYKLELKEIGKQTVVRGNTLNLTIPLEGVNPALANPQITVKSDLPGLTTEADKLMWSPDKEQKAGVYPVTVIVAQDGQKVERTFQLDFLEQNTAPRIEAATSAIAYQTQPFSL 472          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A517RMB5_9PLAN (Ig domain protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RMB5_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 2.480e-63
Identity = 96/164 (58.54%), Postives = 134/164 (81.71%), Query Frame = 1
Query:    4 EWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            +WTVQRG+LD++PA+H KGA +TQ P+YLQ ++DY  +A +SPFAKPVPDKVY+LEL+DI  QT++RGN+LDL+L L G+NP   AP +SV ++L  +VA++GKL+W P  EQK G +PV +TATQG+Q VE+ F+IEF+E NT P++E V++ TAYQT+P++L
Sbjct:  309 DWTVQRGMLDSKPAAHKKGATITQAPQYLQTVFDYGLVAASSPFAKPVPDKVYKLELKDISDQTVVRGNTLDLALTLQGVNPGLKAPVLSVIAELPSLVAESGKLKWTPTKEQKPGVYPVIVTATQGEQSVEKLFQIEFLENNTPPQIEVVTSATAYQTQPMSL 472          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A517WST2_9PLAN (Cadherin domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WST2_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 9.560e-63
Identity = 97/164 (59.15%), Postives = 131/164 (79.88%), Query Frame = 1
Query:    4 EWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            EW VQRGVLDT+P +H+KG  V Q P+YLQA++DY  +A ++PFAKPVPDKVY+LEL++I KQT++RGN L+L +P+ GINPS +AP +SVK  L G+V ++ KL+W+PA EQK G +P+TI A QGDQ  E+ F+IE +EKNT PK+E + +V AYQT+PL+L
Sbjct:  309 EWAVQRGVLDTKPTAHSKGEVVMQAPQYLQAVFDYGLVAPSNPFAKPVPDKVYKLELKEIPKQTIVRGNILELKIPIVGINPSINAPVLSVKEKLPGLVMKSDKLKWSPAKEQKAGVYPITIAAVQGDQTQEKVFQIELLEKNTPPKIEAIKSVVAYQTQPLSL 472          
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Match: A0A518IJ75_9PLAN (Ig domain protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJ75_9PLAN)

HSP 1 Score: 212 bits (540), Expect = 1.340e-62
Identity = 97/164 (59.15%), Postives = 132/164 (80.49%), Query Frame = 1
Query:    4 EWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVPDKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIVAQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLETVSTVTAYQTRPLTL 495
            +WTVQRGVL+T+ A+H KGA VTQ P+YLQA++DY  IA +SPFAKP+PDK+Y LEL+DI  QT++RGN+LDL+LPL G+NP   AP +SV ++L  +V ++GKL+W+P  EQK G +PV + A QG+Q VE  F+IEF+EKNT P++E VS+ TAYQT+P++L
Sbjct:  309 DWTVQRGVLNTKQATHKKGATVTQAPQYLQAVFDYGLIAASSPFAKPIPDKIYNLELKDISNQTIVRGNTLDLNLPLQGVNPGLKAPILSVITELPSLVVESGKLKWSPDKEQKPGVYPVIVNAKQGEQSVETLFQIEFLEKNTPPQIEVVSSTTAYQTQPMSL 472          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128630.5748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7K729_9PLAN1.420e-106100.00Cadherin domain-containing protein n=6 Tax=Gimesia... [more]
A0A518ADI6_9PLAN1.540e-8680.72Ig domain protein n=4 Tax=Gimesia panareensis TaxI... [more]
A0A2E2C8T6_9PLAN1.810e-6864.24Cadherin domain-containing protein n=5 Tax=Plancto... [more]
A0A3D3R8F5_9PLAN1.060e-6761.82Cadherin domain-containing protein n=2 Tax=Gimesia... [more]
A6CD17_9PLAN2.060e-6662.42Cadherin domain-containing protein n=6 Tax=Plancto... [more]
A0A517VKI0_9PLAN4.600e-6459.39Ig domain protein n=1 Tax=Gimesia algae TaxID=2527... [more]
A0A517RMB5_9PLAN2.480e-6358.54Ig domain protein n=1 Tax=Gimesia alba TaxID=25279... [more]
A0A517WST2_9PLAN9.560e-6359.15Cadherin domain-containing protein n=2 Tax=Gimesia... [more]
A0A518IJ75_9PLAN1.340e-6259.15Ig domain protein n=1 Tax=Gimesia fumaroli TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128630contigM-pyrifera_M_contig128630:2..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score222.6
Seed ortholog evalue1.3e-55
Seed eggNOG ortholog344747.PM8797T_14284
Preferred namepeaD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amine dehydrogenase activity
EggNOG OGs2J2EB@203682,COG3391@1,COG3391@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.1555676-CDS-M-pyrifera_M_contig128630:1..4991622815799.1555676-CDS-M-pyrifera_M_contig128630:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128630 2..499 -
1692277574.7369308-CDS-M-pyrifera_M_contig128630:1..4991692277574.7369308-CDS-M-pyrifera_M_contig128630:1..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128630 2..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128630.5748.1prot_M-pyrifera_M_contig128630.5748.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128630 2..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128630.5748.1

>prot_M-pyrifera_M_contig128630.5748.1 ID=prot_M-pyrifera_M_contig128630.5748.1|Name=mRNA_M-pyrifera_M_contig128630.5748.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
TEWTVQRGVLDTRPASHNKGAAVTQVPEYLQALYDYQQIADNSPFAKPVP
DKVYQLELRDIGKQTLIRGNSLDLSLPLAGINPSQSAPKISVKSDLLGIV
AQAGKLQWAPATEQKTGTFPVTITATQGDQKVERTFEIEFMEKNTAPKLE
TVSTVTAYQTRPLTLQ
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mRNA from alignment at M-pyrifera_M_contig128630:2..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128630.5748.1 ID=mRNA_M-pyrifera_M_contig128630.5748.1|Name=mRNA_M-pyrifera_M_contig128630.5748.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig128630:2..499- (Macrocystis pyrifera P11B4 male)
ACAGAGTGGACTGTCCAGCGTGGTGTGCTTGATACCAGACCAGCCTCGCA TAACAAAGGAGCGGCTGTAACTCAGGTGCCGGAATACCTGCAGGCATTAT ATGACTATCAGCAGATCGCTGATAACAGTCCTTTCGCCAAACCGGTTCCT GACAAGGTTTATCAACTGGAACTTCGCGATATTGGGAAACAGACTCTGAT CAGAGGTAACAGCCTGGATCTGTCCCTGCCCCTTGCAGGGATCAATCCCT CACAGTCAGCACCGAAGATTTCTGTCAAATCAGATTTACTCGGGATTGTA GCCCAGGCTGGAAAACTGCAATGGGCACCGGCAACAGAACAGAAGACCGG AACATTTCCCGTGACAATCACTGCCACCCAAGGCGATCAGAAAGTTGAGA GAACGTTCGAGATCGAGTTTATGGAAAAAAATACCGCCCCAAAACTGGAA ACGGTATCTACTGTGACGGCATACCAGACGCGCCCCTTAACCCTCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128630:2..499-

>mRNA_M-pyrifera_M_contig128630.5748.1 ID=mRNA_M-pyrifera_M_contig128630.5748.1|Name=mRNA_M-pyrifera_M_contig128630.5748.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig128630:2..499- (Macrocystis pyrifera P11B4 male)
ACAGAGTGGACTGTCCAGCGTGGTGTGCTTGATACCAGACCAGCCTCGCA
TAACAAAGGAGCGGCTGTAACTCAGGTGCCGGAATACCTGCAGGCATTAT
ATGACTATCAGCAGATCGCTGATAACAGTCCTTTCGCCAAACCGGTTCCT
GACAAGGTTTATCAACTGGAACTTCGCGATATTGGGAAACAGACTCTGAT
CAGAGGTAACAGCCTGGATCTGTCCCTGCCCCTTGCAGGGATCAATCCCT
CACAGTCAGCACCGAAGATTTCTGTCAAATCAGATTTACTCGGGATTGTA
GCCCAGGCTGGAAAACTGCAATGGGCACCGGCAACAGAACAGAAGACCGG
AACATTTCCCGTGACAATCACTGCCACCCAAGGCGATCAGAAAGTTGAGA
GAACGTTCGAGATCGAGTTTATGGAAAAAAATACCGCCCCAAAACTGGAA
ACGGTATCTACTGTGACGGCATACCAGACGCGCCCCTTAACCCTCCAGAC
AGAGTGGACTGTCCAGCGTGGTGTGCTTGATACCAGACCAGCCTCGCATA
ACAAAGGAGCGGCTGTAACTCAGGTGCCGGAATACCTGCAGGCATTATAT
GACTATCAGCAGATCGCTGATAACAGTCCTTTCGCCAAACCGGTTCCTGA
CAAGGTTTATCAACTGGAACTTCGCGATATTGGGAAACAGACTCTGATCA
GAGGTAACAGCCTGGATCTGTCCCTGCCCCTTGCAGGGATCAATCCCTCA
CAGTCAGCACCGAAGATTTCTGTCAAATCAGATTTACTCGGGATTGTAGC
CCAGGCTGGAAAACTGCAATGGGCACCGGCAACAGAACAGAAGACCGGAA
CATTTCCCGTGACAATCACTGCCACCCAAGGCGATCAGAAAGTTGAGAGA
ACGTTCGAGATCGAGTTTATGGAAAAAAATACCGCCCCAAAACTGGAAAC
GGTATCTACTGTGACGGCATACCAGACGCGCCCCTTAACCCTCCAG
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