mRNA_M-pyrifera_M_contig128554.5736.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128554.5736.1
Unique NamemRNA_M-pyrifera_M_contig128554.5736.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A497BNK0_9CHLR (PAS domain S-box protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497BNK0_9CHLR)

HSP 1 Score: 145 bits (366), Expect = 2.120e-42
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P V  D GQL +LLQNL+GNA+K+ G E P + V  E + D  VF VRDNGIGID    +R+F IFQRLH R +YPGTGIGL+VCK+IVERHGGRIW E  P  G  F FTL
Sbjct:   39 PTVMADGGQLVQLLQNLVGNAVKFRGEEPPRVHVGVEEKADAWVFSVRDNGIGIDPASCERIFLIFQRLHGRGEYPGTGIGLAVCKKIVERHGGRIWVESQPGQGATFFFTL 150          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A841GYM0_9BACT (PAS domain S-box-containing protein n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841GYM0_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.910e-41
Identity = 72/112 (64.29%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            PVV GDA QL ++LQNL+ NA+K+HG   P + V  E    + V  VRDNGIGI  E + R+F IFQRLH+RA+YPGTGIGLS+CK+IVERHGGRIW E APDGG+VF FTL
Sbjct:  430 PVVTGDAVQLGQVLQNLVANAVKFHGDAPPRVHVGAERNGAEWVIRVRDNGIGIAPEYAQRIFVIFQRLHTRAEYPGTGIGLSICKKIVERHGGRIWVESAPDGGSVFSFTL 541          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A842XL01_9EURY (GHKL domain-containing protein n=1 Tax=Methanophagales archaeon TaxID=2056316 RepID=A0A842XL01_9EURY)

HSP 1 Score: 149 bits (376), Expect = 3.580e-41
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P+V  DA QL +L QNLIGNAIK+HG E P + V  E + ++ VF VRDNGIGID + +DR+F+IFQRLH+R +YPGTGIGL++CK+IVERHGG IW E  P  G  F FT+
Sbjct:  270 PIVMADALQLTQLFQNLIGNAIKFHGEEPPSVHVSVEQKGNEWVFSVRDNGIGIDPKYADRIFKIFQRLHNRREYPGTGIGLAICKKIVERHGGHIWVESQPGKGAAFYFTI 381          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: UPI001AC6F8BB (Partial two-component system, chemotaxis family, sensor kinase Cph1 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AC6F8BB)

HSP 1 Score: 143 bits (360), Expect = 4.740e-41
Identity = 67/112 (59.82%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P V  D GQL +L QNLI NAIK+ G+E P I V     + + V  VRDNGIGID +  +RVFEIFQRLH+R +YPGTGIGL++CK+I ERHGGRIWFE  P  G+ F FT+
Sbjct:   77 PTVMADGGQLTQLFQNLIANAIKFRGAELPRIHVSARQDNQEWVLTVRDNGIGIDSQYRERVFEIFQRLHTRREYPGTGIGLAICKKIAERHGGRIWFESEPGKGSTFYFTI 188          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: L9XYS1_9EURY (Multi-sensor signal transduction histidine kinase n=1 Tax=Natrinema versiforme JCM 10478 TaxID=1227496 RepID=L9XYS1_9EURY)

HSP 1 Score: 140 bits (354), Expect = 3.230e-40
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P V+GD GQL +L QNL+ NAI+Y G E P +RV  E    + V  VRD GIG+D EQ+DRVFE+FQRLH++ ++ GTGIGL++CKRIVERHGG IW +  P  GT F  TL
Sbjct:   71 PCVKGDRGQLRQLFQNLLDNAIQYSGDEPPSVRVSAEDDGSEWVVSVRDEGIGMDPEQTDRVFEVFQRLHTQDEHSGTGIGLAICKRIVERHGGEIWIDSVPGEGTTFSLTL 182          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: UPI001C3F35A5 (ATP-binding protein n=1 Tax=Methylogaea oryzae TaxID=1295382 RepID=UPI001C3F35A5)

HSP 1 Score: 138 bits (347), Expect = 5.500e-40
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P V GDA QL +LLQNLIGNAIK+ G   P +++     +    F VRDNGIG+  E ++R+F IFQRLH++  YPGTGIGL++CK+IVERHGGRIW E  P  G  FCFTL
Sbjct:    2 PTVTGDASQLTQLLQNLIGNAIKFRGDAAPRVQLTVTPEEKAWRFEVRDNGIGLAPEFAERIFVIFQRLHTKEQYPGTGIGLAICKKIVERHGGRIWVESEPGQGAAFCFTL 113          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A2U1RPV8_9BACT (Histidine kinase domain-containing protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A2U1RPV8_9BACT)

HSP 1 Score: 144 bits (363), Expect = 7.420e-40
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P V GDA QL RL QNLI NAIK+ G E P + +  E +D + +F VRDNGIG++ +  +R+F IFQRLH R +YPGTGIGL++C+RIVERHGGRIW E  P  G+ F FT+
Sbjct:  222 PAVMGDASQLMRLFQNLIDNAIKFAGEEAPRVHIAAEQKDGEWLFSVRDNGIGVEPQYKERIFVIFQRLHGRDEYPGTGIGLAICRRIVERHGGRIWMESEPGKGSTFYFTI 333          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A7V5WH43_9DELT (Histidine kinase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7V5WH43_9DELT)

HSP 1 Score: 149 bits (376), Expect = 1.750e-39
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            PVV  D  QL+ LLQNL+ NA+K+ G E P I +++    DD V CVRDNGIGID   +DR+F IFQRLH R++Y GTG+GL++CK+IVERHGGRIW +    GG++FCFTL
Sbjct: 1305 PVVHADRTQLNHLLQNLLANALKFRGEEPPRIHIFSRREKDDWVVCVRDNGIGIDPRHADRIFLIFQRLHRRSEYEGTGVGLAICKKIVERHGGRIWVQSEQTGGSLFCFTL 1416          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A2V8VHH1_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8VHH1_9BACT)

HSP 1 Score: 145 bits (366), Expect = 2.230e-39
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            PVVRGDA QL  LLQNLIGNAIK+ G E P I V  E    + +F VRDNGIGI+    +RVF IFQRLH+R  YPGTGIGLS+CK+IVERHGGRIW E  P  G  F FT+
Sbjct:  324 PVVRGDAIQLATLLQNLIGNAIKFRGEEAPTIHVAAERSGPEWLFSVRDNGIGIEPRFLERVFVIFQRLHTRESYPGTGIGLSICKKIVERHGGRIWVESQPGRGATFRFTM 435          
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Match: A0A6H1TT79_9CYAN (PAS domain S-box protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1TT79_9CYAN)

HSP 1 Score: 149 bits (375), Expect = 2.410e-39
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDNGIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEPAPDGGTVFCFTL 336
            P + GDA QL RLLQNLI NAIKY G   P + V    +D   VF +RDNGIGID +  DR+F IFQRLH+R +YPGTGIGL++CK+IVERHGGRIW E  P  G++F FTL
Sbjct: 1826 PAIVGDAKQLARLLQNLISNAIKYRGERSPAVHVSARRQDRTWVFSIRDNGIGIDPKHHDRIFTIFQRLHTREEYPGTGIGLAICKKIVERHGGRIWVESEPGEGSIFYFTL 1937          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128554.5736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A497BNK0_9CHLR2.120e-4261.61PAS domain S-box protein (Fragment) n=1 Tax=Chloro... [more]
A0A841GYM0_9BACT2.910e-4164.29PAS domain S-box-containing protein n=1 Tax=Longim... [more]
A0A842XL01_9EURY3.580e-4160.71GHKL domain-containing protein n=1 Tax=Methanophag... [more]
UPI001AC6F8BB4.740e-4159.82Partial two-component system, chemotaxis family, s... [more]
L9XYS1_9EURY3.230e-4058.04Multi-sensor signal transduction histidine kinase ... [more]
UPI001C3F35A55.500e-4058.04ATP-binding protein n=1 Tax=Methylogaea oryzae Tax... [more]
A0A2U1RPV8_9BACT7.420e-4058.04Histidine kinase domain-containing protein n=1 Tax... [more]
A0A7V5WH43_9DELT1.750e-3958.93Histidine kinase n=1 Tax=Desulfobacteraceae bacter... [more]
A0A2V8VHH1_9BACT2.230e-3964.29Hybrid sensor histidine kinase/response regulator ... [more]
A0A6H1TT79_9CYAN2.410e-3961.61PAS domain S-box protein n=3 Tax=Cyanobacteria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128554contigM-pyrifera_M_contig128554:56..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score146.7
Seed ortholog evalue6.3e-33
Seed eggNOG ortholog1173028.ANKO01000056_gene2163
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
EggNOG OGs1G1Z5@1117,1HH3F@1150,COG2202@1,COG2202@2,COG4251@1,COG4251@2
COG Functional cat.T
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.5362058-CDS-M-pyrifera_M_contig128554:55..3911622815798.5362058-CDS-M-pyrifera_M_contig128554:55..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128554 56..391 +
1692277574.4573972-CDS-M-pyrifera_M_contig128554:55..3911692277574.4573972-CDS-M-pyrifera_M_contig128554:55..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128554 56..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128554.5736.1prot_M-pyrifera_M_contig128554.5736.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128554 56..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128554.5736.1

>prot_M-pyrifera_M_contig128554.5736.1 ID=prot_M-pyrifera_M_contig128554.5736.1|Name=mRNA_M-pyrifera_M_contig128554.5736.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
PVVRGDAGQLHRLLQNLIGNAIKYHGSERPCIRVYTETRDDDTVFCVRDN
GIGIDVEQSDRVFEIFQRLHSRADYPGTGIGLSVCKRIVERHGGRIWFEP
APDGGTVFCFTL
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mRNA from alignment at M-pyrifera_M_contig128554:56..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128554.5736.1 ID=mRNA_M-pyrifera_M_contig128554.5736.1|Name=mRNA_M-pyrifera_M_contig128554.5736.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig128554:56..391+ (Macrocystis pyrifera P11B4 male)
CCGGTGGTTCGCGGCGATGCCGGACAACTTCACCGCTTGCTGCAGAATCT GATTGGTAACGCGATCAAGTATCACGGCAGCGAGCGCCCGTGCATCCGCG TTTATACGGAAACCCGCGACGACGACACCGTATTTTGCGTGCGCGACAAC GGTATCGGCATCGACGTGGAACAGTCCGACCGCGTGTTCGAAATCTTCCA GCGCCTGCACAGCCGCGCGGACTATCCCGGCACCGGGATAGGCCTGTCCG TGTGCAAGCGCATTGTCGAGCGCCACGGCGGCCGGATCTGGTTCGAACCG GCGCCTGACGGCGGCACCGTGTTCTGTTTCACCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128554:56..391+

>mRNA_M-pyrifera_M_contig128554.5736.1 ID=mRNA_M-pyrifera_M_contig128554.5736.1|Name=mRNA_M-pyrifera_M_contig128554.5736.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig128554:56..391+ (Macrocystis pyrifera P11B4 male)
CCGGTGGTTCGCGGCGATGCCGGACAACTTCACCGCTTGCTGCAGAATCT
GATTGGTAACGCGATCAAGTATCACGGCAGCGAGCGCCCGTGCATCCGCG
TTTATACGGAAACCCGCGACGACGACACCGTATTTTGCGTGCGCGACAAC
GGTATCGGCATCGACGTGGAACAGTCCGACCGCGTGTTCGAAATCTTCCA
GCGCCTGCACAGCCGCGCGGACTATCCCGGCACCGGGATAGGCCTGTCCG
TGTGCAAGCGCATTGTCGAGCGCCACGGCGGCCGGATCTGGTTCGAACCG
GCGCCTGACGGCGGCACCGTGTTCTGTTTCACCCTGCCGGTGGTTCGCGG
CGATGCCGGACAACTTCACCGCTTGCTGCAGAATCTGATTGGTAACGCGA
TCAAGTATCACGGCAGCGAGCGCCCGTGCATCCGCGTTTATACGGAAACC
CGCGACGACGACACCGTATTTTGCGTGCGCGACAACGGTATCGGCATCGA
CGTGGAACAGTCCGACCGCGTGTTCGAAATCTTCCAGCGCCTGCACAGCC
GCGCGGACTATCCCGGCACCGGGATAGGCCTGTCCGTGTGCAAGCGCATT
GTCGAGCGCCACGGCGGCCGGATCTGGTTCGAACCGGCGCCTGACGGCGG
CACCGTGTTCTGTTTCACCCTG
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