mRNA_M-pyrifera_M_contig128548.5735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128548.5735.1
Unique NamemRNA_M-pyrifera_M_contig128548.5735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128548.5735.1 vs. uniprot
Match: A0A7S4HIY5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HIY5_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 3.540e-32
Identity = 55/94 (58.51%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   16 VQLKAIDLDPSADLTPFQGAVNALRELSVQQTVGGKLSCIKQAATGVETLLKKLMDNFGADEFLPMFCFAMLHAGMPALYSECAFMEDFMEDDL 297
            ++LKAID+ PSA++ PFQ AVNA+R ++VQ+TV  KL C++ AA+ VE LLKK+MD FGADEFLPMF   M+ +  P L+SEC FM+DFM+++L
Sbjct:   18 IRLKAIDIAPSAEVAPFQNAVNAMRSMAVQKTVARKLECVRIAASRVEGLLKKMMDQFGADEFLPMFSLVMVQSEAPKLHSECCFMDDFMDENL 111
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BLAST of mRNA_M-pyrifera_M_contig128548.5735.1 vs. uniprot
Match: UPI001ABDD7B1 (VPS9 domain-containing protein 1 n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABDD7B1)

HSP 1 Score: 52.4 bits (124), Expect = 3.320e-5
Identity = 32/99 (32.32%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:   61 PFQGAVNALRELSVQQTVGGKLSCIKQAATGVETLLKKLMDN-----FGADEFLPMFCFAMLHAGMPALYSECAFMEDFMEDDLRFSVYGYMLAQLQVA 342
            P++ AV  L  L  Q+T   KL CI +    +    ++ +        GAD+ LP+  F +L + M  L SECA +E+F+++       GY L  LQ A
Sbjct:  541 PYRAAVEELEYLPHQRTPQRKLECIVRTLRVICECAEEYVSTPGTAAIGADDLLPILAFVVLKSRMSHLLSECAALEEFIQEGYLIGEEGYCLTSLQSA 639
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128548.5735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4HIY5_9EUKA3.540e-3258.51Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI001ABDD7B13.320e-532.32VPS9 domain-containing protein 1 n=2 Tax=Bufo TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128548contigM-pyrifera_M_contig128548:97..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815798.3140233-CDS-M-pyrifera_M_contig128548:96..4981622815798.3140233-CDS-M-pyrifera_M_contig128548:96..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128548 97..498 +
1692277574.4474795-CDS-M-pyrifera_M_contig128548:96..4981692277574.4474795-CDS-M-pyrifera_M_contig128548:96..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128548 97..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128548.5735.1prot_M-pyrifera_M_contig128548.5735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128548 97..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128548.5735.1

>prot_M-pyrifera_M_contig128548.5735.1 ID=prot_M-pyrifera_M_contig128548.5735.1|Name=mRNA_M-pyrifera_M_contig128548.5735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
TPSDLVQLKAIDLDPSADLTPFQGAVNALRELSVQQTVGGKLSCIKQAAT
GVETLLKKLMDNFGADEFLPMFCFAMLHAGMPALYSECAFMEDFMEDDLR
FSVYGYMLAQLQVAAGVFTDPSTLAGLEAPRQP*
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mRNA from alignment at M-pyrifera_M_contig128548:97..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128548.5735.1 ID=mRNA_M-pyrifera_M_contig128548.5735.1|Name=mRNA_M-pyrifera_M_contig128548.5735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig128548:97..498+ (Macrocystis pyrifera P11B4 male)
ACTCCCTCTGACCTTGTGCAGTTGAAAGCCATCGACTTGGACCCCAGTGC
AGACTTGACGCCTTTCCAGGGCGCTGTCAACGCTCTTAGAGAGCTTTCAG
TGCAGCAAACGGTGGGTGGCAAGCTGAGCTGTATCAAGCAAGCGGCCACT
GGCGTCGAGACTCTCCTGAAGAAGCTCATGGACAACTTCGGGGCAGACGA
GTTCCTGCCCATGTTCTGCTTCGCCATGCTTCATGCCGGCATGCCTGCGC
TCTATTCAGAGTGCGCCTTCATGGAAGACTTCATGGAGGACGACCTCCGC
TTCTCAGTGTATGGCTACATGCTGGCTCAGCTGCAGGTGGCAGCAGGCGT
CTTCACGGACCCCAGCACCCTGGCCGGCCTCGAGGCGCCGCGACAGCCGT
AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128548:97..498+

>mRNA_M-pyrifera_M_contig128548.5735.1 ID=mRNA_M-pyrifera_M_contig128548.5735.1|Name=mRNA_M-pyrifera_M_contig128548.5735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig128548:97..498+ (Macrocystis pyrifera P11B4 male)
ACTCCCTCTGACCTTGTGCAGTTGAAAGCCATCGACTTGGACCCCAGTGC
AGACTTGACGCCTTTCCAGGGCGCTGTCAACGCTCTTAGAGAGCTTTCAG
TGCAGCAAACGGTGGGTGGCAAGCTGAGCTGTATCAAGCAAGCGGCCACT
GGCGTCGAGACTCTCCTGAAGAAGCTCATGGACAACTTCGGGGCAGACGA
GTTCCTGCCCATGTTCTGCTTCGCCATGCTTCATGCCGGCATGCCTGCGC
TCTATTCAGAGTGCGCCTTCATGGAAGACTTCATGGAGGACGACCTCCGC
TTCTCAGTGTATGGCTACATGCTGGCTCAGCTGCAGGTGGCAGCAGGCGT
CTTCACGGACCCCAGCACCCTGGCCGGCCTCGAGGCGCCGCGACAGCCGT
AGACTCCCTCTGACCTTGTGCAGTTGAAAGCCATCGACTTGGACCCCAGT
GCAGACTTGACGCCTTTCCAGGGCGCTGTCAACGCTCTTAGAGAGCTTTC
AGTGCAGCAAACGGTGGGTGGCAAGCTGAGCTGTATCAAGCAAGCGGCCA
CTGGCGTCGAGACTCTCCTGAAGAAGCTCATGGACAACTTCGGGGCAGAC
GAGTTCCTGCCCATGTTCTGCTTCGCCATGCTTCATGCCGGCATGCCTGC
GCTCTATTCAGAGTGCGCCTTCATGGAAGACTTCATGGAGGACGACCTCC
GCTTCTCAGTGTATGGCTACATGCTGGCTCAGCTGCAGGTGGCAGCAGGC
GTCTTCACGGACCCCAGCACCCTGGCCGGCCTCGAGGCGCCGCGACAGCC
GTAG
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