mRNA_M-pyrifera_M_contig128361.5698.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128361.5698.1
Unique NamemRNA_M-pyrifera_M_contig128361.5698.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: A0A6J2XLL0_SITOR (ER lumen protein-retaining receptor n=2 Tax=Dryophthorinae TaxID=39812 RepID=A0A6J2XLL0_SITOR)

HSP 1 Score: 134 bits (336), Expect = 4.380e-37
Identity = 68/118 (57.63%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRL+GDL HL+++++LL+K++ TRSCAGIS KS VL+ +V+ ARYLDLV  Y+SLYNT MK+ +++S+   I+ I  ++ ATYDR HDTFRI +L+ P  LLAL IN +F FLEV
Sbjct:    1 MNVFRLLGDLSHLIAVIILLQKIWHTRSCAGISGKSQVLFALVYTARYLDLVSTYVSLYNTFMKVIFLISSYATIYFIYMKFRATYDRNHDTFRIEFLILPSVLLALLINHQFSFLEV 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: U4US69_DENPD (ER lumen protein-retaining receptor n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4US69_DENPD)

HSP 1 Score: 132 bits (331), Expect = 2.490e-36
Identity = 68/118 (57.63%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRL+GDL HLL+I++LL+K++++RSCAGIS KS VL+ +V+ ARYLDLV VY+SLYN  MK+ ++LS+   ++LI  ++ ATYDR HDTFRI +L+ P  +LAL IN +F  LEV
Sbjct:    1 MNIFRLLGDLSHLLAIMILLQKIFYSRSCAGISAKSQVLFAIVYTARYLDLVTVYVSLYNISMKVVFLLSSYATLYLIYLKFRATYDRNHDTFRIEFLLLPAIVLALLINHQFSALEV 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: A0A6P5VD86_DROOB (ER lumen protein-retaining receptor n=1 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VD86_DROOB)

HSP 1 Score: 129 bits (324), Expect = 2.830e-35
Identity = 62/118 (52.54%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRL+ DL H+++IL+LL K++ +RSCAGIS KS +L+ +V+  RYLD++  Y+SLYN++MKL +++++G  ++LI +++ ATYD  HD+FRI YL+ PCALL+LF N E   LEV
Sbjct:    1 MNIFRLVADLAHVVAILILLHKIWKSRSCAGISGKSQILFAIVYFMRYLDILTTYVSLYNSIMKLLFLIASGATLYLIYRKFKATYDHNHDSFRIGYLLVPCALLSLFFNHELAVLEV 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: UPI00083C5527 (ER lumen protein-retaining receptor n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C5527)

HSP 1 Score: 129 bits (324), Expect = 2.830e-35
Identity = 66/118 (55.93%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FR+IGDL HLL+I++LLRK++ TRSCAGIS KS +L+ +V+  RYLDLV  Y+SLYNT+MK+ ++  +    +LI  ++ ATYD  HDTFRI +L+AP  +LAL IN +F FLE+
Sbjct:    1 MNIFRIIGDLSHLLAIIILLRKIWKTRSCAGISGKSQILFALVYTTRYLDLVTTYVSLYNTVMKIIFIAVSIATCYLIYMKFKATYDHNHDTFRIEFLLAPAVILALLINHDFTFLEI 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: A0A3M7T6L7_BRAPC (ER lumen protein-retaining receptor n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T6L7_BRAPC)

HSP 1 Score: 128 bits (321), Expect = 8.030e-35
Identity = 68/118 (57.63%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRLIGDL HL +I++LL K++ TRSCAGIS +S +L+ +VF  RYLDL   YISLYN+LMK+FY+ S+   I+L+  ++ ATYDR HDTFR+ +L+ P A+LAL IN EF+ LE+
Sbjct:    1 MNIFRLIGDLSHLFAIIILLLKIWKTRSCAGISGRSQILFALVFCTRYLDLFTHYISLYNSLMKIFYLTSSFGTIYLMFFKFKATYDRNHDTFRVEFLLIPSAVLALLINHEFDVLEI 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: A0A1V9WYN6_9ACAR (ER lumen protein-retaining receptor n=3 Tax=Gamasina TaxID=1723665 RepID=A0A1V9WYN6_9ACAR)

HSP 1 Score: 128 bits (321), Expect = 8.030e-35
Identity = 65/118 (55.08%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MNLFRL+GDL HL +I++LL K++ TRSCAGIS +S +L+ VV+ ARYLDLV  +IS+YNT+MK+ +++++   ++L+  ++ ATYDR HDTFR+ +L+APCA+LAL IN EF  +E+
Sbjct:    1 MNLFRLVGDLSHLFAIIILLLKIWKTRSCAGISGRSQLLFSVVYTARYLDLVTSFISVYNTVMKVIFLVASYGTLYLMWVKFKATYDRNHDTFRVEFLLAPCAVLALLINHEFTIMEL 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: A0A7G3AH45_LUTLO (ER lumen protein-retaining receptor n=5 Tax=Phlebotominae TaxID=7198 RepID=A0A7G3AH45_LUTLO)

HSP 1 Score: 127 bits (320), Expect = 1.140e-34
Identity = 66/118 (55.93%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRL GDL HLL+I++LL K++ TRSCAGIS KS +L+ VV+VARYLDL   YISLYNT+MK+F++ ++G  ++L+  ++ ATYD  HD+FRI +L+ P A+L+L IN  F  LE+
Sbjct:    1 MNIFRLAGDLSHLLAIIVLLLKIWKTRSCAGISGKSQILFTVVYVARYLDLFTTYISLYNTVMKIFFLAASGMTVYLMYVKFRATYDHNHDSFRIEFLLIPAAILSLLINHSFTVLEI 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: T1KRZ0_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KRZ0_TETUR)

HSP 1 Score: 127 bits (320), Expect = 1.140e-34
Identity = 66/118 (55.93%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FR++GDL HLL+I++LL K++ TRSC+GIS KS +L+  V+  RYLDL   +ISLYN++MK+ +++++   I+LI  ++ ATYD+ HDTFRI +L+APCALLAL +N EF FLEV
Sbjct:    1 MNIFRMLGDLSHLLAIIILLIKIWKTRSCSGISGKSQILFTAVYTTRYLDLFTNFISLYNSVMKVVFLVTSYATIYLIYFKFKATYDKNHDTFRIEFLLAPCALLALVLNHEFTFLEV 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: A0A814IYE6_9BILA (ER lumen protein-retaining receptor n=2 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814IYE6_9BILA)

HSP 1 Score: 127 bits (319), Expect = 1.650e-34
Identity = 67/118 (56.78%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRLIGDL HL +IL+LL K++ TRSCAGIS +S +L+ +VF  RYLDL   +ISLYNTLMK+FY+ S+   I+L+  ++ ATYDR HDTFR+ +L+ P A+L+L  N EF+ LE+
Sbjct:    1 MNIFRLIGDLSHLFAILILLLKIWKTRSCAGISGRSQILFALVFATRYLDLFTHFISLYNTLMKIFYLCSSFGTIYLMYVKFKATYDRNHDTFRVEFLLIPVAILSLIFNHEFDVLEI 118
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BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Match: UPI000C77EA29 (ER lumen protein-retaining receptor-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77EA29)

HSP 1 Score: 127 bits (319), Expect = 2.270e-34
Identity = 66/118 (55.93%), Postives = 91/118 (77.12%), Query Frame = 1 
Query:    1 MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLDLVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVAPCALLALFINDEFEFLEV 354
            MN+FRL GDL HLL+I+LLL K++ TRSCAGIS KS +L+++VFV+RYLDL   +ISLYNT MK+F++ S    ++ +  ++ ATYD  HDTFRI +L+ PCA+LAL +N EF  +E+
Sbjct:    1 MNIFRLAGDLSHLLAIILLLIKIWKTRSCAGISGKSQILFLIVFVSRYLDLFSNFISLYNTAMKVFFIGSAAATVYFMYVKFKATYDGNHDTFRIEFLLGPCAILALVLNHEFSVMEI 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128361.5698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J2XLL0_SITOR4.380e-3757.63ER lumen protein-retaining receptor n=2 Tax=Dryoph... [more]
U4US69_DENPD2.490e-3657.63ER lumen protein-retaining receptor n=2 Tax=Dendro... [more]
A0A6P5VD86_DROOB2.830e-3552.54ER lumen protein-retaining receptor n=1 Tax=Drosop... [more]
UPI00083C55272.830e-3555.93ER lumen protein-retaining receptor n=1 Tax=Nicrop... [more]
A0A3M7T6L7_BRAPC8.030e-3557.63ER lumen protein-retaining receptor n=1 Tax=Brachi... [more]
A0A1V9WYN6_9ACAR8.030e-3555.08ER lumen protein-retaining receptor n=3 Tax=Gamasi... [more]
A0A7G3AH45_LUTLO1.140e-3455.93ER lumen protein-retaining receptor n=5 Tax=Phlebo... [more]
T1KRZ0_TETUR1.140e-3455.93Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A814IYE6_9BILA1.650e-3456.78ER lumen protein-retaining receptor n=2 Tax=Brachi... [more]
UPI000C77EA292.270e-3455.93ER lumen protein-retaining receptor-like n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128361contigM-pyrifera_M_contig128361:79..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score127.1
Seed ortholog evalue5.4e-27
Seed eggNOG ortholog32264.tetur19g01200.1
KEGG koko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005046,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0032507,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035437,GO:0042277,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0046923,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595
EggNOG free text desc.ER retention sequence binding. It is involved in the biological process described with protein retention in ER lumen
EggNOG OGs38HS7@33154,3BB67@33208,3CRU6@33213,41TEK@6656,COG5196@1,KOG3106@2759
Ec32 ortholog descriptionER lumen protein retaining receptor
Ec32 orthologEc-01_012320.3
COG Functional cat.U
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.7522957-CDS-M-pyrifera_M_contig128361:78..4321622815796.7522957-CDS-M-pyrifera_M_contig128361:78..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128361 79..432 -
1692277573.8181162-CDS-M-pyrifera_M_contig128361:78..4321692277573.8181162-CDS-M-pyrifera_M_contig128361:78..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128361 79..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128361.5698.1prot_M-pyrifera_M_contig128361.5698.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128361 79..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128361.5698.1

>prot_M-pyrifera_M_contig128361.5698.1 ID=prot_M-pyrifera_M_contig128361.5698.1|Name=mRNA_M-pyrifera_M_contig128361.5698.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MNLFRLIGDLLHLLSILLLLRKMYFTRSCAGISLKSTVLYMVVFVARYLD
LVLVYISLYNTLMKLFYMLSTGTIIFLITQRYSATYDREHDTFRIAYLVA
PCALLALFINDEFEFLEV
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mRNA from alignment at M-pyrifera_M_contig128361:79..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128361.5698.1 ID=mRNA_M-pyrifera_M_contig128361.5698.1|Name=mRNA_M-pyrifera_M_contig128361.5698.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig128361:79..432- (Macrocystis pyrifera P11B4 male)
ATGAATCTCTTCCGCCTCATTGGAGACCTCCTCCACCTGCTGAGCATTCT
GCTGCTGCTGCGCAAGATGTACTTCACGCGCAGCTGCGCTGGCATCTCCC
TGAAGAGCACAGTGCTCTACATGGTGGTGTTCGTGGCGCGCTACCTGGAC
CTGGTGCTGGTCTACATCTCGCTCTACAACACCCTCATGAAGCTCTTCTA
CATGCTCTCCACGGGCACCATCATCTTCCTCATCACCCAGCGCTACTCCG
CCACCTACGACCGCGAGCACGACACCTTCCGCATCGCCTACCTGGTCGCC
CCCTGCGCGCTCCTCGCCCTCTTCATCAACGACGAGTTCGAGTTCCTCGA
GGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128361:79..432-

>mRNA_M-pyrifera_M_contig128361.5698.1 ID=mRNA_M-pyrifera_M_contig128361.5698.1|Name=mRNA_M-pyrifera_M_contig128361.5698.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig128361:79..432- (Macrocystis pyrifera P11B4 male)
ATGAATCTCTTCCGCCTCATTGGAGACCTCCTCCACCTGCTGAGCATTCT
GCTGCTGCTGCGCAAGATGTACTTCACGCGCAGCTGCGCTGGCATCTCCC
TGAAGAGCACAGTGCTCTACATGGTGGTGTTCGTGGCGCGCTACCTGGAC
CTGGTGCTGGTCTACATCTCGCTCTACAACACCCTCATGAAGCTCTTCTA
CATGCTCTCCACGGGCACCATCATCTTCCTCATCACCCAGCGCTACTCCG
CCACCTACGACCGCGAGCACGACACCTTCCGCATCGCCTACCTGGTCGCC
CCCTGCGCGCTCCTCGCCCTCTTCATCAACGACGAGTTCGAGTTCCTCGA
GGTAATGAATCTCTTCCGCCTCATTGGAGACCTCCTCCACCTGCTGAGCA
TTCTGCTGCTGCTGCGCAAGATGTACTTCACGCGCAGCTGCGCTGGCATC
TCCCTGAAGAGCACAGTGCTCTACATGGTGGTGTTCGTGGCGCGCTACCT
GGACCTGGTGCTGGTCTACATCTCGCTCTACAACACCCTCATGAAGCTCT
TCTACATGCTCTCCACGGGCACCATCATCTTCCTCATCACCCAGCGCTAC
TCCGCCACCTACGACCGCGAGCACGACACCTTCCGCATCGCCTACCTGGT
CGCCCCCTGCGCGCTCCTCGCCCTCTTCATCAACGACGAGTTCGAGTTCC
TCGAGGTA
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