mRNA_M-pyrifera_M_contig128346.5695.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128346.5695.1
Unique NamemRNA_M-pyrifera_M_contig128346.5695.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A3D5DGZ9_9GAMM (Aspartate aminotransferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGZ9_9GAMM)

HSP 1 Score: 190 bits (482), Expect = 9.340e-56
Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDFL 465
            G  VPP +YF+  + VL +HG+  VADEVITGFGRTG LFG +TFGLKPDH   AK IT  YFPLSA+ L R+LY  LE GSD +G LAHA+T AAHPVGAAAALK +EIIERD LV HAA++G+ L   L    GHPLVG +R+ GL  ++DFL
Sbjct:  230 GFKVPPPEYFSAITSVLDRHGIDLVADEVITGFGRTGKLFGSQTFGLKPDHMVVAKGITSAYFPLSAVGLNRDLYDALEVGSDNIGTLAHASTMAAHPVGAAAALKVMEIIERDKLVDHAAKMGKRLASGLARLGGHPLVGEIRNLGLGASLDFL 384          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A836X1Y0_9PROT (Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836X1Y0_9PROT)

HSP 1 Score: 165 bits (418), Expect = 3.800e-46
Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDFL 465
            GL+ PPA YF     +L+ +G+ ++ DEV+TGF RTG+ +G ET+G+ PD    AK+IT  YFP+SA+A+  E Y  LE GSDA+G  AHA T+A HPVGAA ALKTIEIIE+  L+ +A  +G  LG +L   + HPLVG VRH GLAG+V+F+
Sbjct:  241 GLLTPPATYFQKLQALLRGYGIRYLDDEVVTGFCRTGNFWGAETYGIDPDCMTMAKSITSAYFPVSAVAMSGEFYEGLEKGSDALGTFAHAGTYAGHPVGAAVALKTIEIIEKRNLLGNARAMGAVLGSKLAGYADHPLVGKVRHVGLAGSVEFV 395          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A1Z8WW51_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WW51_9GAMM)

HSP 1 Score: 158 bits (400), Expect = 1.000e-43
Identity = 84/154 (54.55%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDF 462
            GL VPP +YF    ++L QH +  VADEV+TGFGRTG ++G E+     DH    K IT GYFPLSAIA+G  L   ++  S  +   AHAAT+AAHPVGAAAALKT+EIIER+ L+ HAA +G+ L + L     HPL+G VR  GLA AVDF
Sbjct:  221 GLHVPPKNYFKCLKKLLDQHEIDLVADEVVTGFGRTGRMWGSESVDFSSDHATMGKGITSGYFPLSAIAIGESLQERMKEKSRRINSFAHAATYAAHPVGAAAALKTLEIIEREKLLEHAATIGKLLEKELRPLGEHPLIGDVRFHGLAAAVDF 374          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A800ECX8_9CHLR (Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A800ECX8_9CHLR)

HSP 1 Score: 149 bits (375), Expect = 5.200e-43
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVG 372
            G  +PP  YF     +L  + + FV DEVITGFGRTG+LFG +  GLKPDH    K +T GYFPLSAI+LG  LY  LE GS+  GVLAHA T +AHPVGAAAALKT+EIIERD L  HA ++G
Sbjct:   27 GFKIPPPGYFERIQTLLLSYEIEFVCDEVITGFGRTGNLFGSDAMGLKPDHVVMGKGMTSGYFPLSAISLGASLYKGLEIGSENHGVLAHAGTFSAHPVGAAAALKTLEIIERDNLTEHAKKMG 150          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: UPI001319F5F1 (aminotransferase n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI001319F5F1)

HSP 1 Score: 149 bits (376), Expect = 4.280e-41
Identity = 75/155 (48.39%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDFL 465
            G++VPPA Y+    +VLK++ +  VADEVI GFGRTG +FGCET+G+KPD    +K IT  YFPLSAI L   ++  +   S+ +GVL H  T   HPVG+A AL+ ++IIE  GLVAHAA +G ++  +L   + HPLVG VR  G+  A++ +
Sbjct:  111 GVVVPPATYWDKIQKVLKKYDILLVADEVICGFGRTGKMFGCETYGIKPDAMVVSKQITSSYFPLSAIILNDRMFEPIADESNKIGVLGHGFTAGGHPVGSAIALENLKIIEERGLVAHAAELGAYMQGKLRELASHPLVGEVRGVGMIAALELV 265          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: UPI0019087FD4 (aspartate aminotransferase family protein n=1 Tax=Advenella mandrilli TaxID=2800330 RepID=UPI0019087FD4)

HSP 1 Score: 152 bits (383), Expect = 4.280e-41
Identity = 73/153 (47.71%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVD 459
            G++VPP  YF    +VLK++ + F+ DEVI GFGRTG +FGC+TF L+PD  + AKA++  Y P+SA  + + +Y  +   SD VGV AH  T++ HP+ AA AL+TI+I + D +VAH   V  H  +RLHA + HPLVG  R  GL GA++
Sbjct:  231 GVIVPPEGYFEGVQKVLKKYDILFIVDEVICGFGRTGMMFGCDTFNLQPDIMSVAKALSSSYLPISATMISQAIYDKIAEQSDEVGVFAHGVTYSGHPICAAVALETIKIYQEDNIVAHVQEVAPHFQKRLHALASHPLVGESRGIGLIGAIE 383          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A3B0RNB2_9ZZZZ (Aminotransferase, class III n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RNB2_9ZZZZ)

HSP 1 Score: 147 bits (370), Expect = 3.200e-40
Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDFL 465
            G++VPP DYF     VL ++ + F++DEVI GFGRTG  FG +TF +KPD  + AKAIT  YFPL AI +  +LY  +   S  +G   H  T+  HPVGAA ALK +EI ERD +V HA  +G+   +RL A + HPLVG  R  G+ GAV+ +
Sbjct:  107 GVIVPPKDYFPKMQVVLDKYDIRFISDEVICGFGRTGEWFGTDTFEMKPDSVSMAKAITSAYFPLGAITIEEDLYQAMLEESKKIGTFGHGYTYTGHPVGAAVALKVLEIYERDNIVGHAKVLGQQFMKRLGALADHPLVGEARGVGMLGAVELV 261          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: Q89MQ8_BRADU (Aminotransferase n=195 Tax=Bradyrhizobiaceae TaxID=41294 RepID=Q89MQ8_BRADU)

HSP 1 Score: 149 bits (376), Expect = 4.510e-40
Identity = 75/155 (48.39%), Postives = 104/155 (67.10%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDFL 465
            G++VPPA Y+     VLK++ +  VADEVI GFGRTG +FGCET+G+KPD    +K IT  YFPLSAI +   ++  +   S+ +GVL H  T   HPVG+A AL+ ++IIE  GLVAHAA +G ++  +L   +GHPLVG VR  G+  A++ +
Sbjct:  232 GVIVPPATYWDKIQAVLKKYDILLVADEVICGFGRTGKMFGCETYGIKPDAIVVSKQITSSYFPLSAILMNDRMFEPIADESNKIGVLGHGFTAGGHPVGSAIALENLKIIEERGLVAHAAELGGYMQGKLRELAGHPLVGEVRGVGMIAALELV 386          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A7Y2FT17_9HYPH (Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2FT17_9HYPH)

HSP 1 Score: 149 bits (376), Expect = 4.580e-40
Identity = 77/155 (49.68%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDFL 465
            G++VPP  YF   + VL ++ V F+ADEVI GFGRTG  FG ET G++P   + AKAIT  YFPL AI +  ++Y  +   S  +G   H  T+ AHPVGAA ALKTIEI +RDG+V HA+++GE   RRL A   HPLVG  R  G+ G+ + +
Sbjct:  231 GVLVPPESYFPKINAVLAKYDVRFIADEVICGFGRTGKWFGTETLGMQPTSVSMAKAITSAYFPLGAITIEEDVYQAMLDASRKIGTFGHGYTYTAHPVGAAVALKTIEIYKRDGIVGHASQLGEVFQRRLAALGDHPLVGETRGRGMLGSFEMV 385          
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Match: A0A7Y3GXV8_9DELT (Aminotransferase class III-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GXV8_9DELT)

HSP 1 Score: 148 bits (373), Expect = 9.970e-40
Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 GLMVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHCATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAAAALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAVDF 462
            GL++PP  Y+A    VL ++ +   ADEV+TGFGRTGS +G +TFG+ PD     K+I+ GYFP+SAIA+  + ++DL  GSD +   AHA+THA HPVGAA ALK +EIIE+  L+ +A   GE L R L   + HPLV  VR  GLA AV+F
Sbjct:  223 GLVIPPESYWAKLQAVLAKYDILCFADEVVTGFGRTGSWWGSQTFGIVPDAVTVGKSISAGYFPVSAIAMSGDFFSDLVRGSDKLDGFAHASTHAGHPVGAAIALKVLEIIEKRALIDNARARGEELLRGLQRYADHPLVVDVRGVGLAAAVEF 376          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128346.5695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DGZ9_9GAMM9.340e-5662.58Aspartate aminotransferase family protein n=1 Tax=... [more]
A0A836X1Y0_9PROT3.800e-4653.55Aminotransferase class III-fold pyridoxal phosphat... [more]
A0A1Z8WW51_9GAMM1.000e-4354.55Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
A0A800ECX8_9CHLR5.200e-4360.48Aminotransferase class III-fold pyridoxal phosphat... [more]
UPI001319F5F14.280e-4148.39aminotransferase n=1 Tax=Bradyrhizobium guangdonge... [more]
UPI0019087FD44.280e-4147.71aspartate aminotransferase family protein n=1 Tax=... [more]
A0A3B0RNB2_9ZZZZ3.200e-4048.39Aminotransferase, class III n=1 Tax=hydrothermal v... [more]
Q89MQ8_BRADU4.510e-4048.39Aminotransferase n=195 Tax=Bradyrhizobiaceae TaxID... [more]
A0A7Y2FT17_9HYPH4.580e-4049.68Aminotransferase class III-fold pyridoxal phosphat... [more]
A0A7Y3GXV8_9DELT9.970e-4051.30Aminotransferase class III-fold pyridoxal phosphat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128346contigM-pyrifera_M_contig128346:24..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score152.5
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog189753.AXAS01000017_gene3102
Preferred nameMA20_28355
KEGG rclassRC00008,RC00062
KEGG koko:K16871
KEGG ReactionR10178
KEGG Pathwayko00250,ko00650,ko01100,ko01120,map00250,map00650,map01100,map01120
KEGG ModuleM00027
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EggNOG OGs1MU2N@1224,2TQND@28211,3JQS8@41294,COG0161@1,COG0161@2
EC2.6.1.96
COG Functional cat.H
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size465
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.6110833-CDS-M-pyrifera_M_contig128346:23..4821622815796.6110833-CDS-M-pyrifera_M_contig128346:23..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128346 24..482 -
1692277573.7560291-CDS-M-pyrifera_M_contig128346:23..4821692277573.7560291-CDS-M-pyrifera_M_contig128346:23..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128346 24..482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.6244276-UTR-M-pyrifera_M_contig128346:482..4881622815796.6244276-UTR-M-pyrifera_M_contig128346:482..488Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128346 483..488 -
1692277573.7663739-UTR-M-pyrifera_M_contig128346:482..4881692277573.7663739-UTR-M-pyrifera_M_contig128346:482..488Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128346 483..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128346.5695.1prot_M-pyrifera_M_contig128346.5695.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128346 24..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128346.5695.1

>prot_M-pyrifera_M_contig128346.5695.1 ID=prot_M-pyrifera_M_contig128346.5695.1|Name=mRNA_M-pyrifera_M_contig128346.5695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MVPPADYFANASRVLKQHGVSFVADEVITGFGRTGSLFGCETFGLKPDHC
ATAKAITGGYFPLSAIALGRELYADLEAGSDAVGVLAHAATHAAHPVGAA
AALKTIEIIERDGLVAHAARVGEHLGRRLHARSGHPLVGHVRHAGLAGAV
DFL
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mRNA from alignment at M-pyrifera_M_contig128346:24..488-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128346.5695.1 ID=mRNA_M-pyrifera_M_contig128346.5695.1|Name=mRNA_M-pyrifera_M_contig128346.5695.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig128346:24..488- (Macrocystis pyrifera P11B4 male)
GGACTGATGGTGCCGCCCGCGGATTACTTTGCCAACGCAAGCCGGGTCCT GAAACAACACGGCGTCAGCTTCGTGGCCGACGAAGTGATCACCGGCTTCG GGCGCACCGGCAGTCTTTTCGGGTGCGAAACGTTCGGGTTAAAACCGGAT CACTGCGCAACGGCGAAAGCGATCACCGGTGGCTACTTTCCACTGTCGGC GATCGCGCTGGGCCGTGAGTTATATGCCGATCTCGAAGCCGGCTCGGACG CGGTCGGCGTACTCGCGCATGCCGCAACCCATGCGGCGCACCCGGTAGGC GCGGCCGCCGCGCTGAAAACGATCGAAATCATTGAGCGCGACGGCCTTGT CGCCCATGCCGCGCGCGTGGGCGAACACCTCGGGCGTCGTCTGCACGCAC GTTCCGGGCACCCGCTCGTCGGTCACGTCCGCCACGCCGGGCTCGCGGGT GCGGTGGATTTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128346:24..488-

>mRNA_M-pyrifera_M_contig128346.5695.1 ID=mRNA_M-pyrifera_M_contig128346.5695.1|Name=mRNA_M-pyrifera_M_contig128346.5695.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig128346:24..488- (Macrocystis pyrifera P11B4 male)
ATGGTGCCGCCCGCGGATTACTTTGCCAACGCAAGCCGGGTCCTGAAACA
ACACGGCGTCAGCTTCGTGGCCGACGAAGTGATCACCGGCTTCGGGCGCA
CCGGCAGTCTTTTCGGGTGCGAAACGTTCGGGTTAAAACCGGATCACTGC
GCAACGGCGAAAGCGATCACCGGTGGCTACTTTCCACTGTCGGCGATCGC
GCTGGGCCGTGAGTTATATGCCGATCTCGAAGCCGGCTCGGACGCGGTCG
GCGTACTCGCGCATGCCGCAACCCATGCGGCGCACCCGGTAGGCGCGGCC
GCCGCGCTGAAAACGATCGAAATCATTGAGCGCGACGGCCTTGTCGCCCA
TGCCGCGCGCGTGGGCGAACACCTCGGGCGTCGTCTGCACGCACGTTCCG
GGCACCCGCTCGTCGGTCACGTCCGCCACGCCGGGCTCGCGGGTGCGGTG
GATTTCCTGATGGTGCCGCCCGCGGATTACTTTGCCAACGCAAGCCGGGT
CCTGAAACAACACGGCGTCAGCTTCGTGGCCGACGAAGTGATCACCGGCT
TCGGGCGCACCGGCAGTCTTTTCGGGTGCGAAACGTTCGGGTTAAAACCG
GATCACTGCGCAACGGCGAAAGCGATCACCGGTGGCTACTTTCCACTGTC
GGCGATCGCGCTGGGCCGTGAGTTATATGCCGATCTCGAAGCCGGCTCGG
ACGCGGTCGGCGTACTCGCGCATGCCGCAACCCATGCGGCGCACCCGGTA
GGCGCGGCCGCCGCGCTGAAAACGATCGAAATCATTGAGCGCGACGGCCT
TGTCGCCCATGCCGCGCGCGTGGGCGAACACCTCGGGCGTCGTCTGCACG
CACGTTCCGGGCACCCGCTCGTCGGTCACGTCCGCCACGCCGGGCTCGCG
GGTGCGGTGGATTTCCTG
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