mRNA_M-pyrifera_M_contig128333.5692.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128333.5692.1
Unique NamemRNA_M-pyrifera_M_contig128333.5692.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: F4PKM0_CAVFA (Non-specific serine/threonine protein kinase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PKM0_CAVFA)

HSP 1 Score: 92.0 bits (227), Expect = 7.920e-20
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHSREEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            +  RRE  +MS I HPNIV + G  + PL +V E +P G+L+ FLH +E V W LR +IALD+  GMA LH S P I+HRDLK
Sbjct: 1929 NEFRRECWVMSGIEHPNIVQLKGLCLDPLCIVTEYLPHGNLYKFLHGKEPVSWVLRLKIALDIASGMAFLHGSTPSIIHRDLK 2011
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BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: F0ZZA9_DICPU (Non-specific serine/threonine protein kinase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZZA9_DICPU)

HSP 1 Score: 90.5 bits (223), Expect = 2.740e-19
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHSREEVG------WGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            S  RRE+ +MS + HPN+VN+LG+++ P  +VME +  GDLH FLHS  ++G      W L  ++ALD+  GM  LH+  PP++HRDLK
Sbjct: 1321 SDFRREIHVMSDLKHPNVVNLLGFTLNPFTMVMEYIDCGDLHKFLHS--QIGDILNGNWALILKLALDIAKGMDFLHSVTPPLLHRDLK 1407
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BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: A0A8J4V570_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V570_9MYCE)

HSP 1 Score: 90.5 bits (223), Expect = 2.750e-19
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   19 RRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLH--SREEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            RRE  +MS + HPNIV + G  + PL +V E +P G+L++FLH  S  E+GW  R ++ALD+  GMA LH+S PPI+HRDLK
Sbjct: 2034 RRECWIMSDLEHPNIVQLRGLCLDPLCIVTEYLPHGNLYSFLHGDSSNEMGWIFRLKVALDISSGMAFLHSSTPPIIHRDLK 2115
[Close]
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: F1A482_DICPU (Non-specific serine/threonine protein kinase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A482_DICPU)

HSP 1 Score: 89.7 bits (221), Expect = 5.140e-19
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHSRE-EVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            +  RRE  +MS++ HPNIV + G  + PL +V E +P G+L++FLH  E E  W  R ++ALDV  GMA LH S PPI+HRDLK
Sbjct: 2147 NEFRRECWVMSELEHPNIVQLKGLCLDPLCIVTEYLPCGNLYSFLHKPEFEASWLFRLKVALDVSSGMAFLHCSTPPIIHRDLK 2230
[Close]
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: D3BLJ5_POLPP (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BLJ5_POLPP)

HSP 1 Score: 89.4 bits (220), Expect = 7.010e-19
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   19 RRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHS-REEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            RRE  +MS + HPNIV + G  + PL +V E +P G+L+ FLH   +E+ W LR +IALD+  GMA LH+S PPI+HRDLK
Sbjct: 1899 RRECWIMSTLEHPNIVQLKGLCLDPLCIVTEFLPNGNLYQFLHQPNQEMSWILRLKIALDISSGMAFLHSSTPPIIHRDLK 1979
[Close]
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: A0A8J4PMN8_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMN8_9MYCE)

HSP 1 Score: 89.0 bits (219), Expect = 9.530e-19
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHSREEVG------WGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            S  R+E+ +MS + HPN+VN+LG+++QP  +VME +  GDLH FLH+   +G      W L  ++ALD+  GM  LH+  PP++HRDLK
Sbjct: 1391 SEFRKEIHVMSDLKHPNVVNLLGFTIQPFTMVMEYIECGDLHKFLHN--PIGDVLNNNWPLILKLALDIAKGMDFLHSVTPPLLHRDLK 1477
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BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: UPI0006450BFE (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450BFE)

HSP 1 Score: 88.6 bits (218), Expect = 1.310e-18
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHS-REEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            +  RRE  +MS + HPNIV + G  + PL +V E +P G+L+ FLH   + + W LR +IALD+  GMA LH+S PPI+HRDLK
Sbjct: 1928 NEFRRECWIMSSLEHPNIVQLKGLCLDPLCIVTEYLPNGNLYQFLHQPSQSISWVLRLKIALDISSGMAFLHSSTPPIIHRDLK 2011
[Close]
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: PATS1_DICDI (Probable serine/threonine-protein kinase pats1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=PATS1_DICDI)

HSP 1 Score: 88.6 bits (218), Expect = 1.310e-18
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHSRE-EVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            +  RRE  +MS++ HPNIV + G  + PL +V E +P G+L++FLH  E E  W  R ++ALD+  GMA LH+S PPI+HRDLK
Sbjct: 2298 NEFRRECWVMSELEHPNIVQLKGLCLDPLCIVTEYLPHGNLYSFLHKPEMEFSWLFRLKVALDISSGMAFLHSSTPPIIHRDLK 2381
[Close]
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: ROCO6_DICDI (Probable serine/threonine-protein kinase roco6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=ROCO6_DICDI)

HSP 1 Score: 87.4 bits (215), Expect = 3.310e-18
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHS----REEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            S  RRE+ +MS + H N+VN+LG+++ P  +VME +  GDLH FLHS    +    W L  ++ALD+  GM  LH+  PP++HRDLK
Sbjct: 1397 SEFRREIHVMSDLKHSNVVNLLGFTLSPFTMVMEYIDCGDLHKFLHSPIGDQLNGNWALILKLALDIAKGMEFLHSVTPPLLHRDLK 1483
[Close]
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Match: A0A8J4PMM1_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMM1_9MYCE)

HSP 1 Score: 87.0 bits (214), Expect = 4.500e-18
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   10 SSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFL----HSREEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK 258
            +  RRE+ LMS +SHPNIV M G+  +P  +VME + LG L TFL    H+ E + W +  +IA+D+  GM+ LH   PP+VHRDLK
Sbjct: 1357 NEFRREVWLMSSLSHPNIVTMKGFCFEPYSIVMEYMDLGSLSTFLSTKKHNGETLSWSIILKIAIDIAQGMSFLHNITPPLVHRDLK 1443
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128333.5692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F4PKM0_CAVFA7.920e-2053.01Non-specific serine/threonine protein kinase n=1 T... [more]
F0ZZA9_DICPU2.740e-1947.19Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8J4V570_9MYCE2.750e-1952.44Non-specific serine/threonine protein kinase n=1 T... [more]
F1A482_DICPU5.140e-1951.19Non-specific serine/threonine protein kinase n=1 T... [more]
D3BLJ5_POLPP7.010e-1953.09Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8J4PMN8_9MYCE9.530e-1946.07Non-specific serine/threonine protein kinase n=1 T... [more]
UPI0006450BFE1.310e-1850.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
PATS1_DICDI1.310e-1850.00Probable serine/threonine-protein kinase pats1 n=1... [more]
ROCO6_DICDI3.310e-1845.98Probable serine/threonine-protein kinase roco6 n=1... [more]
A0A8J4PMM1_9MYCE4.500e-1848.28Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128333contigM-pyrifera_M_contig128333:17..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog5786.XP_003292752.1
Preferred nameroco6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.C-terminal of Roc, COR, domain
EggNOG OGs3XDFI@554915,COG0515@1,KOG0192@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.4687815-CDS-M-pyrifera_M_contig128333:16..2741622815796.4687815-CDS-M-pyrifera_M_contig128333:16..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128333 17..274 -
1692277573.712009-CDS-M-pyrifera_M_contig128333:16..2741692277573.712009-CDS-M-pyrifera_M_contig128333:16..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128333 17..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128333.5692.1prot_M-pyrifera_M_contig128333.5692.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128333 17..274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128333.5692.1

>prot_M-pyrifera_M_contig128333.5692.1 ID=prot_M-pyrifera_M_contig128333.5692.1|Name=mRNA_M-pyrifera_M_contig128333.5692.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
EYASSIRRELALMSQISHPNIVNMLGYSVQPLQLVMELVPLGDLHTFLHS
REEVGWGLRTRIALDVCLGMAHLHASEPPIVHRDLK
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mRNA from alignment at M-pyrifera_M_contig128333:17..274-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128333.5692.1 ID=mRNA_M-pyrifera_M_contig128333.5692.1|Name=mRNA_M-pyrifera_M_contig128333.5692.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig128333:17..274- (Macrocystis pyrifera P11B4 male)
GAGTACGCCTCCAGCATCCGCCGCGAGCTTGCGCTTATGTCCCAGATCTC
CCACCCCAACATCGTCAACATGCTCGGCTACAGCGTGCAGCCACTCCAGC
TCGTCATGGAGCTAGTGCCCCTCGGAGACTTGCACACTTTTCTCCACAGC
CGTGAGGAGGTTGGATGGGGCCTCAGAACGCGCATTGCTCTGGACGTCTG
CCTGGGAATGGCCCACCTCCACGCGTCAGAGCCTCCCATTGTGCACCGTG
ACCTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128333:17..274-

>mRNA_M-pyrifera_M_contig128333.5692.1 ID=mRNA_M-pyrifera_M_contig128333.5692.1|Name=mRNA_M-pyrifera_M_contig128333.5692.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig128333:17..274- (Macrocystis pyrifera P11B4 male)
GAGTACGCCTCCAGCATCCGCCGCGAGCTTGCGCTTATGTCCCAGATCTC
CCACCCCAACATCGTCAACATGCTCGGCTACAGCGTGCAGCCACTCCAGC
TCGTCATGGAGCTAGTGCCCCTCGGAGACTTGCACACTTTTCTCCACAGC
CGTGAGGAGGTTGGATGGGGCCTCAGAACGCGCATTGCTCTGGACGTCTG
CCTGGGAATGGCCCACCTCCACGCGTCAGAGCCTCCCATTGTGCACCGTG
ACCTCAAGGAGTACGCCTCCAGCATCCGCCGCGAGCTTGCGCTTATGTCC
CAGATCTCCCACCCCAACATCGTCAACATGCTCGGCTACAGCGTGCAGCC
ACTCCAGCTCGTCATGGAGCTAGTGCCCCTCGGAGACTTGCACACTTTTC
TCCACAGCCGTGAGGAGGTTGGATGGGGCCTCAGAACGCGCATTGCTCTG
GACGTCTGCCTGGGAATGGCCCACCTCCACGCGTCAGAGCCTCCCATTGT
GCACCGTGACCTCAAG
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