mRNA_M-pyrifera_M_contig12833.5690.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12833.5690.1
Unique NamemRNA_M-pyrifera_M_contig12833.5690.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: D7FQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH8_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.860e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RGGIRRAVPKGFPYFHVEWDDGGYAHVIEGE-VRLVSSAGSDTVGRV 138
            RGGIRRAVPKGFP+FHVEW+DGGYA++IEGE        G DT+  +
Sbjct: 1054 RGGIRRAVPKGFPFFHVEWEDGGYANIIEGEEANFPRDFGVDTLAGI 1100
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A6H5L7J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 9.930e-11
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 RGGIRRAVPKGFPYFHVEWDDGGYAHVIEGE-VRLVSSAGSDTVGRV 138
            RGGIRRAVPKGFP+FHVEW DGGYA++IEGE        G DT+  +
Sbjct:  668 RGGIRRAVPKGFPFFHVEWADGGYANIIEGEEANFPRDFGVDTLAGI 714
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A7S4DE16_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE16_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 8.190e-10
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   10 IRRAVPKGFPYFHVEWDDGGYAHVIEGEVRLVSSAGSDTV 129
            + RAVPK FPYFHVEW+DGGYAHVIE E R     G+  V
Sbjct:   69 VHRAVPKEFPYFHVEWEDGGYAHVIEAEDRFPRDFGTQVV 108
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A7S0CHB4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHB4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-6
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    7 GIRRAVPKGFPYFHVEWDDGGYAHVIE 87
            G+RR++PK FPY HVEWDDGG+A +IE
Sbjct:  143 GLRRSIPKNFPYIHVEWDDGGFAQIIE 169
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A7S3Q0D3_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0D3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.050e-5
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    7 GIRRAVPKGFPYFHVEWDDGGYAHVIEGE 93
            G+R  VPKGFPYF+VEW DGG+A +IE E
Sbjct:  383 GLRGTVPKGFPYFNVEWSDGGFAQIIENE 411
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: F2U139_SALR5 (CWF19L2 protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U139_SALR5)

HSP 1 Score: 50.1 bits (118), Expect = 1.460e-5
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 GIRRAVPKGFPYFHVEWD-DGGYAHVIEGEVRLVSSAGSDTVG 132
            G RR+VPKGFPYF+VE+  DGG+AHVIE + +     G + VG
Sbjct:  801 GFRRSVPKGFPYFNVEFGTDGGFAHVIEDQTQFPFYFGQEIVG 843
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: UPI001B88966C (CWF19-like protein 2 isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88966C)

HSP 1 Score: 49.7 bits (117), Expect = 1.990e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 IRRAVPKGFPYFHVEWD-DGGYAHVIEGEVRLVSSAGSDTVG 132
            IR AVPKGFPYF V++   GG+AHVIE EV+  S  G + +G
Sbjct:  851 IRHAVPKGFPYFSVDFGRQGGFAHVIEDEVKFPSYFGKEIIG 892
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A7S2URF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URF7_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.490e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 RGGIRRAVPKGFPYFHVEWDDGGYAHVIEGEVRLVSSAGSDTV 129
            +GG+R ++PKGFPYF++EW  GG+A +IE         G DT+
Sbjct:   33 KGGVRYSIPKGFPYFNIEWLSGGFAQMIE-TASFPKDFGVDTI 74
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A836CIX0_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX0_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.650e-5
Identity = 26/43 (60.47%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    4 GGIRRAVPKGFPYFHVEWDDGG-YAHVIEGEVRLVSSAGSDTV 129
            GGIRRAVP+ F YF VEW  GG YAHVIE E R  +  G   V
Sbjct:  253 GGIRRAVPRNFAYFAVEWGGGGGYAHVIEQEDRFPADFGRGVV 295
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BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Match: A0A812Z6J7_9DINO (Cwf19l2 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Z6J7_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 2.720e-5
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 1 
Query:    1 RGGIRRAVPKGFPYFHVEWD-DGGYAHVIEGEVRLVSSAGSDTVGRVCVQGCVD 159
            +GG+R AVPKGFPY HV++   GG+AHVI+           D +  +C    +D
Sbjct:  646 KGGVRSAVPKGFPYIHVDFSLGGGFAHVIDNVAEFPRDFAQDVIAGMCEMTILD 699
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12833.5690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FQH8_ECTSI2.860e-1163.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J6_9PHAE9.930e-1163.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DE16_HETAK8.190e-1065.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0CHB4_9STRA2.200e-670.37Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3Q0D3_9STRA1.050e-568.97Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
F2U139_SALR51.460e-555.81CWF19L2 protein n=1 Tax=Salpingoeca rosetta (strai... [more]
UPI001B88966C1.990e-557.14CWF19-like protein 2 isoform X1 n=2 Tax=Gigantopel... [more]
A0A7S2URF7_9STRA2.490e-546.51Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A836CIX0_9STRA2.650e-560.47CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A812Z6J7_9DINO2.720e-540.74Cwf19l2 protein n=1 Tax=Symbiodinium necroappetens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12833contigM-pyrifera_M_contig12833:773..946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog2880.D7FQH8
Preferred nameCWF19L2
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.Protein similar to CwfJ C-terminus 2
EggNOG OGsKOG2477@1,KOG2477@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.38819-CDS-M-pyrifera_M_contig12833:772..9461622815796.38819-CDS-M-pyrifera_M_contig12833:772..946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12833 773..946 +
1692277573.6808-CDS-M-pyrifera_M_contig12833:772..9461692277573.6808-CDS-M-pyrifera_M_contig12833:772..946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12833 773..946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12833.5690.1prot_M-pyrifera_M_contig12833.5690.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12833 773..946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12833.5690.1

>prot_M-pyrifera_M_contig12833.5690.1 ID=prot_M-pyrifera_M_contig12833.5690.1|Name=mRNA_M-pyrifera_M_contig12833.5690.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
RGGIRRAVPKGFPYFHVEWDDGGYAHVIEGEVRLVSSAGSDTVGRVCVQG
CVDDWDC*
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mRNA from alignment at M-pyrifera_M_contig12833:773..946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12833.5690.1 ID=mRNA_M-pyrifera_M_contig12833.5690.1|Name=mRNA_M-pyrifera_M_contig12833.5690.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig12833:773..946+ (Macrocystis pyrifera P11B4 male)
AGGGGAGGCATTCGTCGGGCGGTGCCCAAGGGTTTCCCGTACTTCCACGT
GGAGTGGGATGATGGGGGCTACGCTCACGTCATCGAGGGGGAGGTGAGAT
TGGTCAGCTCCGCTGGCTCAGACACTGTCGGACGCGTCTGCGTTCAAGGA
TGTGTGGATGATTGGGATTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12833:773..946+

>mRNA_M-pyrifera_M_contig12833.5690.1 ID=mRNA_M-pyrifera_M_contig12833.5690.1|Name=mRNA_M-pyrifera_M_contig12833.5690.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig12833:773..946+ (Macrocystis pyrifera P11B4 male)
AGGGGAGGCATTCGTCGGGCGGTGCCCAAGGGTTTCCCGTACTTCCACGT
GGAGTGGGATGATGGGGGCTACGCTCACGTCATCGAGGGGGAGGTGAGAT
TGGTCAGCTCCGCTGGCTCAGACACTGTCGGACGCGTCTGCGTTCAAGGA
TGTGTGGATGATTGGGATTGCTGAAGGGGAGGCATTCGTCGGGCGGTGCC
CAAGGGTTTCCCGTACTTCCACGTGGAGTGGGATGATGGGGGCTACGCTC
ACGTCATCGAGGGGGAGGTGAGATTGGTCAGCTCCGCTGGCTCAGACACT
GTCGGACGCGTCTGCGTTCAAGGATGTGTGGATGATTGGGATTGCTGA
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