mRNA_M-pyrifera_M_contig1283.5688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1283.5688.1
Unique NamemRNA_M-pyrifera_M_contig1283.5688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: D7FLU6_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU6_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 8.590e-121
Identity = 193/257 (75.10%), Postives = 223/257 (86.77%), Query Frame = 1
Query:    1 STSPLRSS---PADAAIDAYPSDVSTEDGTGAAAPPAGVTDESSF-MANEVLQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVGLGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVFEREA 759
            S SPLRSS   PADA +DA+PSDVS +    ++ PPA       F +ANE+LQT+ +GVGE YIPYSE DKSAIE+LVVELE+S  +GT+VQFPRDL KLDGRWRLVFTNNLVGLG+LSP+ L+DVYQVVDS++ LV+N VYA MSPPLF+ETWGRLG+RAA++A+TVEDR+TFPV+F IQH+F VSSQSKPAQIELVQKELKLMNAEDA KRSLALPAL+PLAKAAAGRFDTT+L Q VRVSRGRFGELRVF+REA
Sbjct:   42 SASPLRSSSSSPADA-VDAFPSDVSPD--ASSSTPPA----SGGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSAAGLVSNVVYATMSPPLFSETWGRLGERAAEIARTVEDRVTFPVNFNIQHNFEVSSQSKPAQIELVQKELKLMNAEDAAKRSLALPALQPLAKAAAGRFDTTYLDQDVRVSRGRFGELRVFQREA 291          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A836CAZ2_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ2_9STRA)

HSP 1 Score: 197 bits (502), Expect = 4.440e-59
Identity = 97/206 (47.09%), Postives = 145/206 (70.39%), Query Frame = 1
Query:  139 VLQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVGLGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLG-QRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVFER 753
            +L  I +GVG+ Y   S +    I+  +V+LE+SG +   V+FP D   LDGRW+L++++N+ G+G+LSP+ L +VYQVVD++ + + N VYA +SPPLF  TWGR   Q  A+ AK V +RI+FPVDF + H F ++S   PAQ+++  KE K++N E   +RSLA+PA++PLA+  AG+FDTT++   +R+SRG  GE+RVF+R
Sbjct:   64 LLSAIGSGVGKGYYMTSRSAAKDIKKAIVDLETSGADMA-VKFPSDFATLDGRWKLLYSSNIFGVGRLSPLTLDEVYQVVDTAGNSIKNVVYATLSPPLFETTWGRFPVQAVANAAKRVNERISFPVDFALDHTFEITSAEYPAQLKIALKETKIVNCEKPEQRSLAVPAIRPLAQIGAGKFDTTYMDDDLRISRGTLGEIRVFQR 268          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A9SHV7_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SHV7_PHYPA)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-8
Identity = 67/222 (30.18%), Postives = 99/222 (44.59%), Query Frame = 1
Query:  142 LQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVG-----------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPL-------AKAAAGRFDTTFLSQGVRVSRGRFGELRVFER 753
            +Q+I AG+    +  +  D++A +    +LE++G+    V+ PRDL+ L GRWRLVFT+               +G+L P+ L  VYQ +D +S  + N V   +  P     W             VE      V  T+ H F V+S S   +I   +  +K       G   L      PL       + +  G FDTT+L    R+SRG  GELR+F R
Sbjct:    5 MQSIIAGLDRGLLATA-NDETAADAAARKLEAAGDA---VELPRDLDLLQGRWRLVFTSGFATGSLGGERPGPPVGRLLPLTLGQVYQRIDVASKELDNIVDLRVGTP-----WP---------LPPVE------VTATLAHTFEVTS-SNSIRIVFDKTTVK----PTGGLSQLPSFDTPPLPEFLRQPSNSRGGSFDTTYLDSDFRISRGDRGELRIFVR 197          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A2K1JV15_PHYPA (PAP_fibrillin domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JV15_PHYPA)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-7
Identity = 69/229 (30.13%), Postives = 101/229 (44.10%), Query Frame = 1
Query:  121 SFMANEVLQTISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVG-----------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPL-------AKAAAGRFDTTFLSQGVRVSRGRFGELRVFER 753
            S +  E+L  I AG+    +  +  D++A +    +LE++G+    V+ PRDL+ L GRWRLVFT+               +G+L P+ L  VYQ +D +S  + N V   +  P     W             VE      V  T+ H F V+S S   +I   +  +K       G   L      PL       + +  G FDTT+L    R+SRG  GELR+F R
Sbjct:   88 SSLKTELLSII-AGLDRGLLATA-NDETAADAAARKLEAAGDA---VELPRDLDLLQGRWRLVFTSGFATGSLGGERPGPPVGRLLPLTLGQVYQRIDVASKELDNIVDLRVGTP-----WP---------LPPVE------VTATLAHTFEVTS-SNSIRIVFDKTTVK----PTGGLSQLPSFDTPPLPEFLRQPSNSRGGSFDTTYLDSDFRISRGDRGELRIFVR 286          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A8J5KSX0_ZINOF (PAP_fibrillin domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KSX0_ZINOF)

HSP 1 Score: 57.4 bits (137), Expect = 4.180e-6
Identity = 64/204 (31.37%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  187 SETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTN-----NLVG------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMS-----PPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALP-ALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
            SE D    E    ELES G  GT V    DLEKL GRW+L+F++      L G      +G+L P+ L  V+Q +D  +    N V   +      PP+  E    L  +  ++  T   +ITF V+ TI+      S S+  Q+E+ +                 LP +L+P +   +G F+ T++ +  R++RG  GELRVF
Sbjct:   91 SEEDLRRAEAAAKELESIG--GT-VDLTIDLEKLQGRWKLIFSSAFSSRTLGGSRPGPPIGRLIPLTLGQVFQRIDIFNKDFDNIVELQLGTPWPLPPI--EATATLAHKL-EIIGTSNIKITF-VNTTIK---PTGSYSQLPQLEIPR-----------------LPDSLRPPSNTRSGEFEVTYVDRDTRITRGDKGELRVF 267          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A835ENR3_9POAL (PAP_fibrillin domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ENR3_9POAL)

HSP 1 Score: 55.8 bits (133), Expect = 2.190e-5
Identity = 60/196 (30.61%), Postives = 86/196 (43.88%), Query Frame = 1
Query:  187 SETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLVFTNNLVG----LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMS-----PPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
            SE D S  +    ELE++   G  V   RDL+KL GRWRLV+++         G+L PI L  V+Q +D  S    N V   +      PPL         +  A LA   E   T  V    +   TV ++   +Q+      L++    D          L+P +   +G F+ T+L    R++RG  GELRVF
Sbjct:  238 SEEDLSRADAAARELEAAAG-GEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAPWPLPPL---------EVTATLAHKFEIVGTSGVKINFEKT-TVKTKGSLSQL----PPLEVPRIPD---------NLRPPSNTGSGEFEVTYLDGDTRITRGDRGELRVF 409          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: Q5QJA2_MAIZE (Harpin binding protein 1 n=4 Tax=Andropogoneae TaxID=147429 RepID=Q5QJA2_MAIZE)

HSP 1 Score: 55.1 bits (131), Expect = 2.600e-5
Identity = 59/190 (31.05%), Postives = 84/190 (44.21%), Query Frame = 1
Query:  226 ELESSGEEGTDVQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMS-----PPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
            ELE++   G  V   RDL+KL GRWRL+    F++  +G        G+L PI L  V+Q +D  S    N V   +      PPL A          A LA   E   T  +  T +   TV ++   +Q+      L++    D          L+P +   +G F+ T+L    RV+RG  GELRVF
Sbjct:  105 ELEAAA--GCPVDLSRDLDKLQGRWRLLYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAPWPLPPLEA---------TATLAHKFEIIGTSGIKITFEKT-TVKTKGNLSQL----PPLEVPRIPD---------NLRPPSNTGSGEFEVTYLDDDTRVTRGDRGELRVF 269          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: UPI001F5DA53E (plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DA53E)

HSP 1 Score: 54.7 bits (130), Expect = 3.490e-5
Identity = 58/181 (32.04%), Postives = 76/181 (41.99%), Query Frame = 1
Query:  259 VQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRA-ADLAKTVEDRITFPVDFTIQHD-FTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALK-----PLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
            V   +DL+KL GRWRLV    F++  +G        G+L PI L  V+Q +D  S    N V   +  P     W      A A LA   E  IT      I  D  TV ++   AQ+ L                 L +P L      P +   +G F+ T+L    RV+RG  GELRVF
Sbjct:  112 VDLAKDLDKLQGRWRLVYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSEDFDNIVELELGAP-----WPLPPVEATATLAHKFE--ITGTASIKINFDKTTVKTKGNLAQLPL-----------------LEVPRLPDNLRPPTSNTGSGEFEVTYLDDDTRVTRGDRGELRVF 268          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A1E5W0X6_9POAL (Putative plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5W0X6_9POAL)

HSP 1 Score: 54.7 bits (130), Expect = 3.650e-5
Identity = 58/186 (31.18%), Postives = 84/186 (45.16%), Query Frame = 1
Query:  226 ELESSGEEGTDVQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRA-ADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
            ELE++G  G  V   +DL+KL GRWRLV    F++  +G        G+L PI L  V+Q +D  S    N V   +  P     W      A A LA   +   T  +  T +   TV ++   +Q+      L++    D          L+P +   +G F+ T+L    RV+RG  GELRVF
Sbjct:  111 ELEAAGGGGP-VDLSKDLDKLQGRWRLVYSSGFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP-----WPLPPVEAVATLAHKFDIIGTSGIKITFEKT-TVKTKGNLSQL----PPLEVPRIPD---------NLRPPSNTGSGEFEVTYLDDDTRVTRGDKGELRVF 276          
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Match: A0A6L5BD47_APIGR (PAP_fibrillin domain-containing protein n=2 Tax=Apioideae TaxID=241778 RepID=A0A6L5BD47_APIGR)

HSP 1 Score: 54.3 bits (129), Expect = 4.690e-5
Identity = 58/203 (28.57%), Postives = 88/203 (43.35%), Query Frame = 1
Query:  187 SETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRWRLV----FTNNLVG-------LGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETWGRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKLMNAEDAGK-RSLALP----ALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVF 747
            SE D    +    E+E   E G  V    DL+KL GRW+L+    F++  +G        G+L PI L  V+Q +D  S    N V   +  P     W             VE      V  T+ H F ++  S    ++++ ++  +    +  +   L +P    AL+P     +G FD T+L   VR++RG  GELRVF
Sbjct:   91 SENDLQKADAAAKEIE---EAGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVELELGAP-----WP---------LPPVE------VTATLAHKFELTGSSS---VKIIFEKTTVKTTGNLSQIPPLEIPQLPDALRPSTNRGSGDFDVTYLDSDVRITRGDRGELRVF 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1283.5688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FLU6_ECTSI8.590e-12175.10PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A836CAZ2_9STRA4.440e-5947.09PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
A9SHV7_PHYPA1.310e-830.18Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A2K1JV15_PHYPA1.640e-730.13PAP_fibrillin domain-containing protein n=1 Tax=Ph... [more]
A0A8J5KSX0_ZINOF4.180e-631.37PAP_fibrillin domain-containing protein n=2 Tax=Zi... [more]
A0A835ENR3_9POAL2.190e-530.61PAP_fibrillin domain-containing protein n=1 Tax=Di... [more]
Q5QJA2_MAIZE2.600e-531.05Harpin binding protein 1 n=4 Tax=Andropogoneae Tax... [more]
UPI001F5DA53E3.490e-532.04plastid-lipid-associated protein 6, chloroplastic ... [more]
A0A1E5W0X6_9POAL3.650e-531.18Putative plastid-lipid-associated protein 6, chlor... [more]
A0A6L5BD47_APIGR4.690e-528.57PAP_fibrillin domain-containing protein n=2 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1283contigM-pyrifera_M_contig1283:21467..25266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog3218.PP1S80_119V6.2
Preferred nameHrBP1
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0010035,GO:0010193,GO:0010287,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042221,GO:0042493,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046677,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0071840,GO:0071944,GO:0098542,GO:1901700
EggNOG free text desc.plastid-lipid-associated protein 6
EggNOG OGs2C4WE@1,2QVEU@2759,37HER@33090,3GEC8@35493
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-26_001200.1
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons6
Model size762
Cds size762
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1283.5688.1prot_M-pyrifera_M_contig1283.5688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1283 21467..25266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.2023313-CDS-M-pyrifera_M_contig1283:21466..216581622815796.2023313-CDS-M-pyrifera_M_contig1283:21466..21658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 21467..21658 -
1692277573.5704706-CDS-M-pyrifera_M_contig1283:21466..216581692277573.5704706-CDS-M-pyrifera_M_contig1283:21466..21658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 21467..21658 -
1622815796.2173119-CDS-M-pyrifera_M_contig1283:22411..225421622815796.2173119-CDS-M-pyrifera_M_contig1283:22411..22542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 22412..22542 -
1692277573.585261-CDS-M-pyrifera_M_contig1283:22411..225421692277573.585261-CDS-M-pyrifera_M_contig1283:22411..22542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 22412..22542 -
1622815796.2309785-CDS-M-pyrifera_M_contig1283:23350..234171622815796.2309785-CDS-M-pyrifera_M_contig1283:23350..23417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 23351..23417 -
1692277573.5956397-CDS-M-pyrifera_M_contig1283:23350..234171692277573.5956397-CDS-M-pyrifera_M_contig1283:23350..23417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 23351..23417 -
1622815796.2427206-CDS-M-pyrifera_M_contig1283:23686..237861622815796.2427206-CDS-M-pyrifera_M_contig1283:23686..23786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 23687..23786 -
1692277573.603798-CDS-M-pyrifera_M_contig1283:23686..237861692277573.603798-CDS-M-pyrifera_M_contig1283:23686..23786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 23687..23786 -
1622815796.2563226-CDS-M-pyrifera_M_contig1283:24339..244081622815796.2563226-CDS-M-pyrifera_M_contig1283:24339..24408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 24340..24408 -
1692277573.6122608-CDS-M-pyrifera_M_contig1283:24339..244081692277573.6122608-CDS-M-pyrifera_M_contig1283:24339..24408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 24340..24408 -
1622815796.2672508-CDS-M-pyrifera_M_contig1283:25063..252661622815796.2672508-CDS-M-pyrifera_M_contig1283:25063..25266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 25064..25266 -
1692277573.6204863-CDS-M-pyrifera_M_contig1283:25063..252661692277573.6204863-CDS-M-pyrifera_M_contig1283:25063..25266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1283 25064..25266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1283.5688.1

>prot_M-pyrifera_M_contig1283.5688.1 ID=prot_M-pyrifera_M_contig1283.5688.1|Name=mRNA_M-pyrifera_M_contig1283.5688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
STSPLRSSPADAAIDAYPSDVSTEDGTGAAAPPAGVTDESSFMANEVLQT
ISAGVGESYIPYSETDKSAIEDLVVELESSGEEGTDVQFPRDLEKLDGRW
RLVFTNNLVGLGKLSPIALKDVYQVVDSSSSLVTNTVYAVMSPPLFAETW
GRLGQRAADLAKTVEDRITFPVDFTIQHDFTVSSQSKPAQIELVQKELKL
MNAEDAGKRSLALPALKPLAKAAAGRFDTTFLSQGVRVSRGRFGELRVFE
REA*
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mRNA from alignment at M-pyrifera_M_contig1283:21467..25266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1283.5688.1 ID=mRNA_M-pyrifera_M_contig1283.5688.1|Name=mRNA_M-pyrifera_M_contig1283.5688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3800bp|location=Sequence derived from alignment at M-pyrifera_M_contig1283:21467..25266- (Macrocystis pyrifera P11B4 male)
TCTACCTCTCCGCTTAGGTCGTCGCCGGCCGACGCTGCGATCGACGCTTA CCCCTCCGACGTTTCGACTGAGGACGGAACTGGCGCCGCAGCCCCCCCGG CTGGTGTGACGGACGAGTCGAGCTTCATGGCCAACGAGGTCTTGCAGACG ATTTCCGCTGGGGTCGGGGAAAGCTATATACCGTACTCAGAGACGGACAA GAGGTGCGAACGCCGAGAGCTTTTAGCGGCCCGTCCCGTCCATCCTCGTG TTAGAAGAGCGAGAACCCGAGTCACCGCAAGTTTCTACCGGCCCGGCGCA GGGAATTCTACTCTGTTTCTCGTTTTTTTTTTCCAGTTGATACACCACTT AGCAAGTGACCGAATAGGAAGAGAATTCTTGGCAAGGAATATTTTCGGGG GGGTTCTGGCGCGTGTACGGCCTTGCTGCGTCTATAGAAAAACCGCTGAG AGTTGGCGGCGTGTCTGGAAAGTATGGCGAACGTCTCGATAGCAGCCCTA AATTGTACATTGCACTTGTTACCGGATATACGGCAGTCCTGGTTCCGTCT CGCATGCCCCTGAAACATGCAAGGCTCTATACTGCCGAACACGAGAATGC CTCTTCGCTGTATGGGTCCGTTATTTGCTTGTGTCCACACACTCGTTCTA TGTGGTGATTTTGTGTTTCGTGTTCATGTACTCGCTCTGTGTGCCCATAG GGTGTTTGCGTCATGTGCTCGCTGTATGTGCCCCTTGTTTGGTTGTGTCA ATGTGTATTGCATTTCTGTGTGCACCTAATATTCACATGTTGGATTTGTC TTCGTGTTATATGTTACTTGGGCGCTGACATTGAAACGCCCTGTGCTTGT GGACCCAGCGCTATCGAGGACTTGGTGGTGGAGCTGGAGTCTTCTGGGGA AGAAGGCACGGACGTTCAGTTCCCTAGGTACGCGGTGGTGGAACCGTATC ACACTAGGGTGATAAGCAAGCACACCCCCCCCGACGAATTTCTAGGCTGG TTTTCTCGACAACAGAGAAGGCGCAAACGCCGAGCGATGAGTCCATCTAT GGAAGTTTATCGTCGAGCTCGATCGTTGTGTGTGCCCCTCCATTACTTTC GGAGAAACTCGGCTCGGAAACTCGTCCCAGGGGGTATGCTGTCTTATCAC CCGTGTCATACGAACAGTATCCCACACCGGTTACGACTCTCTGTAGCTGG GCAGTCCTTCATCGCGCGCCGCATTCTCCCGGTGGAAGAGGGCAGTGGTA TCGATAGCGGATCGATAGCTCGTACATTAACCCGTTAGGACTGCACTCCC GTTTGGGGGGCAACTTACTTGGACTTAGAGTCATATGTGAATTATGTACA GTGCGGTAGAGTAAAAGGGTCAATAAGCCTCCGCGTGACGCGACGGGGCA TGGCCCGCTTGTACGTTGACGCAGTTGGTGCGACTCCCTGTAAAGCATGC TGGCCCCCGCCACCGTCCGTCGTTTCGAAGGGACTTGGAGAAGCTGGATG GCCGCTGGAGACTGGTGTTCACCAACAACCTGGTCGGGCTTGGGAAACTC TCTCCCATCGCCCTCAAAGACGTCTACCAGGTGAAGAGGGGACGGGAAGG CGGAAGGCGAAACAACCACGCCCACGTTTGCGTGTGGCGTAGGAACAACC ATATTCATAGAAAAAACTCAACACTATACCAGGTACTGCTCAGTTTTGTC CGGCGTAGCCAGCGGAACTGTCGCTCAAACAGCATCGGCTCGAACTATCA CCGAGACAGCAAGAAGGTGCTCGGTGCCCCCCCCCCCGGTGACCCTTCCC GCCTCCTCCCTTTTGTGTTGTCGTGCTGATATTTCCCCCATCGCTTCAGG TCGTGGACTCCTCTTCCAGCCTCGTGACCAACACTGTCTACGCCGTCATG TCCCCGCCGCTGTTTGGTGAGACTTGTTTCTGTCCTTTTTTTCCCATCTG TTTTTTGTTTTGTTTTTGTTTGCAGACACGCAGGACGCGCAGTCTCTCGT TCCGGTTGCGGGCACAGCTCCGCTTGCCGTAGAAGTTAAGTGCCTCTGTG TGCGCCAGACCTTGTATAAGCTGTTATTTACTCGCGGCGTGCTCACCCCT CACGAGGTGCCACTGGTATGTCTGTCTGCAGGGCCGCCACCGACGCGTTC TTCTCGGCTGCTGGGCGCACTTTTTTCGCCTCTCTGCTGACCCGCAATAC TATCGATATCAACCCTTTCGGGACCCAGATACGCCTGAACACGAAAAGCG AGCGGTATTTATCGCCCGTCCACAAAGAGCATGCTGCGTGACACGCATCA GGATGCTTCCCCTCTCGTGTCATGTGTACTTTTCCGTATGTCACGCTTCG AATGCATTCCCGATCCCATACCCCAGCATCCCTTCTTCTGCTTGCTTCGC GTGGCCGATGCTGTAATATTCGTGATATCTTGTCCACACACTTTGTTTCT GTCTGCAGTCTCAAAAGGTTCTCAATAGCTCCAATGCAGTAATTTATGTG TGGATACCAGGCCCCCTTTTCCTAGATACTGTCGCCTTAATATGTATACA CAAGTTCAAGGTCGCACCCAAGGTCTGCCACTCCGTTCCGTGTAGGCCCG AGGTACTGAACAACCTCGGTGTGTACTCCACACACCAACCACGCAAGAGA GAATCTGCTTAAGACGTCCGCCCCAGACATGGAAAATTTACTCATCTTGT GCGGTTTCATGCTTCGGTTGGCAGCGGAGACATGGGGAAGGCTGGGCCAG CGCGCGGCGGACCTGGCGAAGACGGTGGAAGATCGGATCACGTTTCCGGT AGATTTCACCATTCAGCACGACTTCACTGTGTCGTCGCAGTCGAAGCCAG CGCAGGTGAAATGGAGAGCGGGCACGGAAAGTTCCGATGTTGGTAATCGA AGTATGAAATATACCAGTATTGACCCTCGAGAGAGCACTGGGTTTCTACC CGGTGTTGGCGTTTGTGTATGATAGCGGTGCATACCAGCAAGCCCTCAAG GGAGCACTGGGTTTATATCCGGTGTTGGCATTCGTGTTTCATAGCGGTAC ATACCAGTGATGGCCCTCAAGGGAGCACTGGTCTCTACCTGGTGTTAGCC TTCGTGCTTGATAGCGGCACTGGGTTTCTGCGTCCCCGGTGCTAGCATTT ATGTATGGTAGGATCTGTGCGCTTACACGCAGATATACCCTCGAGGTGTC GCTCTGCCCGGGAGGCTCGGCGCAAAGAAGGTGCGTGCACCATTTCAAGA GACCGACGTACCTCGGCTCAACTATAGACTCGCGGGGATCGGCTTGGGCA GGGCGCGCGATGGGACCCGAAGTGATCGGACGATGGATGAACACTATGCT CAGCGCACATTTGTGACCGTTCGCTCGTCCCTGGTCCCCGCCCCCCCGTA CCCCGCGTGAGTCTTGCGCGCTGAGTGTCCTAGGGCCGCCGTTGAGGCAC GAAATCACCTGAGCAAGAGCACGCACCTCGTCTACCGCTGTTTGTTGTCT CCTATCTCCTGACCTTCTCTCTATGCTCCCCCTCCCCTACGACTGCAATC ATGCATGACATGCGTACACCCCCCGCCCCCTCCCCGTGTCTGCTCTGTGA CGTCGAAGATCGAGTTGGTACAGAAGGAACTGAAGCTGATGAACGCCGAG GATGCCGGCAAGCGATCCCTTGCCCTTCCGGCGCTTAAGCCGCTGGCAAA GGCAGCGGCCGGTCGTTTCGACACCACGTTCTTGAGCCAAGGCGTGCGCG TCAGCCGCGGGCGTTTCGGCGAACTACGGGTTTTCGAACGAGAGGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1283:21467..25266-

>mRNA_M-pyrifera_M_contig1283.5688.1 ID=mRNA_M-pyrifera_M_contig1283.5688.1|Name=mRNA_M-pyrifera_M_contig1283.5688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig1283:21467..25266- (Macrocystis pyrifera P11B4 male)
TCTACCTCTCCGCTTAGGTCGTCGCCGGCCGACGCTGCGATCGACGCTTA
CCCCTCCGACGTTTCGACTGAGGACGGAACTGGCGCCGCAGCCCCCCCGG
CTGGTGTGACGGACGAGTCGAGCTTCATGGCCAACGAGGTCTTGCAGACG
ATTTCCGCTGGGGTCGGGGAAAGCTATATACCGTACTCAGAGACGGACAA
GAGTCTACCTCTCCGCTTAGGTCGTCGCCGGCCGACGCTGCGATCGACGC
TTACCCCTCCGACGTTTCGACTGAGGACGGAACTGGCGCCGCAGCCCCCC
CGGCTGGTGTGACGGACGAGTCGAGCTTCATGGCCAACGAGGTCTTGCAG
ACGATTTCCGCTGGGGTCGGGGAAAGCTATATACCGTACTCAGAGACGGA
CAAGAGCGCTATCGAGGACTTGGTGGTGGAGCTGGAGTCTTCTGGGGAAG
AAGGCACGGACGTTCAGTTCCCTAGCGCTATCGAGGACTTGGTGGTGGAG
CTGGAGTCTTCTGGGGAAGAAGGCACGGACGTTCAGTTCCCTAGGGACTT
GGAGAAGCTGGATGGCCGCTGGAGACTGGTGTTCACCAACAACCTGGTCG
GGCTTGGGAAACTCTCTCCCATCGCCCTCAAAGACGTCTACCAGGGACTT
GGAGAAGCTGGATGGCCGCTGGAGACTGGTGTTCACCAACAACCTGGTCG
GGCTTGGGAAACTCTCTCCCATCGCCCTCAAAGACGTCTACCAGGTCGTG
GACTCCTCTTCCAGCCTCGTGACCAACACTGTCTACGCCGTCATGTCCCC
GCCGCTGTTTGGTCGTGGACTCCTCTTCCAGCCTCGTGACCAACACTGTC
TACGCCGTCATGTCCCCGCCGCTGTTTGCGGAGACATGGGGAAGGCTGGG
CCAGCGCGCGGCGGACCTGGCGAAGACGGTGGAAGATCGGATCACGTTTC
CGGTAGATTTCACCATTCAGCACGACTTCACTGTGTCGTCGCAGTCGAAG
CCAGCGCAGCGGAGACATGGGGAAGGCTGGGCCAGCGCGCGGCGGACCTG
GCGAAGACGGTGGAAGATCGGATCACGTTTCCGGTAGATTTCACCATTCA
GCACGACTTCACTGTGTCGTCGCAGTCGAAGCCAGCGCAGATCGAGTTGG
TACAGAAGGAACTGAAGCTGATGAACGCCGAGGATGCCGGCAAGCGATCC
CTTGCCCTTCCGGCGCTTAAGCCGCTGGCAAAGGCAGCGGCCGGTCGTTT
CGACACCACGTTCTTGAGCCAAGGCGTGCGCGTCAGCCGCGGGCGTTTCG
GCGAACTACGGGTTTTCGAACGAGAGGCGTGAATCGAGTTGGTACAGAAG
GAACTGAAGCTGATGAACGCCGAGGATGCCGGCAAGCGATCCCTTGCCCT
TCCGGCGCTTAAGCCGCTGGCAAAGGCAGCGGCCGGTCGTTTCGACACCA
CGTTCTTGAGCCAAGGCGTGCGCGTCAGCCGCGGGCGTTTCGGCGAACTA
CGGGTTTTCGAACGAGAGGCGTGA
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