mRNA_M-pyrifera_M_contig128249.5684.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128249.5684.1
Unique NamemRNA_M-pyrifera_M_contig128249.5684.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: UPI001FD1ACF5 (TetR/AcrR family transcriptional regulator n=1 Tax=Nocardioides sp. W7 TaxID=2931390 RepID=UPI001FD1ACF5)

HSP 1 Score: 105 bits (261), Expect = 3.980e-26
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQERD--GRPQLEREVFAHNLISMATAMVTAP 276
            +LV++ PG  DPAVQ  L RTGG+ VY LL++RMP +   L+ ER +L TSF+LR++ADRAR+++R+  GR QL  E F  NLISM TAMVTAP
Sbjct:  114 QLVDDGPGSTDPAVQEVLGRTGGFEVYDLLDQRMPPMPEALQIERTALATSFLLRSIADRARARDRETPGRAQLSTEDFIRNLISMVTAMVTAP 207
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: A0A2E0MPE0_PIMSR (TetR family transcriptional regulator n=1 Tax=Pimelobacter sp. (strain R48) TaxID=51662 RepID=A0A2E0MPE0_PIMSR)

HSP 1 Score: 105 bits (261), Expect = 4.080e-26
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQERD--GRPQLEREVFAHNLISMATAMVTA 273
            ELV EDP   DP V  AL+R GGY VYGLLE+R+P +  D+RSERLSLVT+F+LR +ADR+R+ +R   GR QLE + FA NL++M   M+TA
Sbjct:  115 ELVEEDPDAMDPEVLHALERLGGYEVYGLLEQRVPPMPDDVRSERLSLVTAFVLRAIADRSRAGDRPRPGRAQLETDPFARNLVAMVVGMLTA 207
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: A0A1V1VXZ1_9ACTN (TetR family transcriptional regulator n=1 Tax=Nocardioides sp. PD653 TaxID=393303 RepID=A0A1V1VXZ1_9ACTN)

HSP 1 Score: 102 bits (253), Expect = 7.100e-25
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   34 PAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQERD--GRPQLEREVFAHNLISMATAMVTAP 276
            P V+ AL+RTGGYAVY LL ER+ A D  LR+ERL+LVT FILR+VADRAR+ ER   GRPQL  E F  NL+SMAT M TAP
Sbjct:  125 PQVEEALERTGGYAVYALLAERLAAYDEALRNERLALVTGFILRSVADRARATERTTPGRPQLTTERFVANLVSMATGMATAP 207
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: A0A1G6J2F5_9ACTN (Regulatory protein, tetR family n=1 Tax=Nocardioides lianchengensis TaxID=1045774 RepID=A0A1G6J2F5_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 1.230e-24
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQERDG--RPQLEREVFAHNLISMATAMVTAPA 279
            +LV+E+ G  + AVQ AL R+GGY VY LL +R+P +   +R ER++L T+F+LR++ADRAR+ +R+G  R QL  E F  NLISM TAMVTAPA
Sbjct:  114 QLVDEEAGGAETAVQEALGRSGGYEVYELLHQRLPEMSEQIRDERMALATTFLLRSIADRARAGDREGPGRTQLSTEDFIRNLISMVTAMVTAPA 208
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: UPI0011DFC5E6 (TetR/AcrR family transcriptional regulator n=1 Tax=Nocardioides rubriscoriae TaxID=642762 RepID=UPI0011DFC5E6)

HSP 1 Score: 100 bits (250), Expect = 2.290e-24
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQER-DGRPQLEREVFAHNLISMATAMVTAPARAP 288
            ELV E+P   DP V AAL R GGY  Y LLE+R+P +  D+R+ERLSLVTSFILR +ADR R+ ER   R QL  E FA NL++M   M++APA  P
Sbjct:  123 ELVEENPETMDPEVLAALHRMGGYDAYALLEQRVPPMADDIRAERLSLVTSFILRAIADRGRAGERASARSQLALEPFAANLVAMVVGMLSAPAPQP 219
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: UPI001123C515 (TetR/AcrR family transcriptional regulator n=1 Tax=Nocardioides plantarum TaxID=29299 RepID=UPI001123C515)

HSP 1 Score: 100 bits (248), Expect = 3.980e-24
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQER-DGRPQLEREVFAHNLISMATAMVTAPA 279
            +LV E+P   DP V  AL+R GGY  Y LLE R+P L  D+RSERLSLVT+FILRT+ADR R+ ER   R QLE E F  NL++M   M++APA
Sbjct:  120 QLVEENPETMDPDVLGALERLGGYDAYALLERRVPPLPDDVRSERLSLVTAFILRTIADRGRAGERPSSRRQLEPEPFTANLVAMVVGMLSAPA 213
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BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: A0A6L7EYZ8_9ACTN (TetR family transcriptional regulator n=2 Tax=Nocardioides flavescens TaxID=2691959 RepID=A0A6L7EYZ8_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 5.750e-24
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQER-DGRPQLEREVFAHNLISMATAMVTAPA 279
            EL+  DP   DP ++  + RTGG AVY  LEER+P L  DLR ERL+L+T+F+LR VADRA+S E+  GRPQL+ + F  NL++M   M+TAPA
Sbjct:  121 ELIGADPASVDPTIREVMARTGGQAVYDELEERLPPLPHDLRVERLTLMTTFVLRAVADRAQSVEQPQGRPQLDADRFTANLVAMVAGMLTAPA 214
[Close]
BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: A0A1H0F9P6_9ACTN (Transcriptional regulator, TetR family n=1 Tax=Nocardioides szechwanensis TaxID=1005944 RepID=A0A1H0F9P6_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 1.350e-23
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQERDGRPQLEREVFAHNLISMATAMVTAP 276
            EL   DP    P ++A L RTGGY VY LL ERMPA+D +LR+ER +L+T F+L +VA R R+   DGR QL    F  NL++MA+AM+TAP
Sbjct:  112 ELFERDPSSYSPEIEAVLARTGGYEVYALLRERMPAMDDELRAERFALMTFFVLGSVARRVRTAGSDGRAQLGTACFVDNLVAMASAMLTAP 203
[Close]
BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: UPI001968263E (TetR family transcriptional regulator n=1 Tax=Nocardioides sp. SYSU D00038 TaxID=2812554 RepID=UPI001968263E)

HSP 1 Score: 98.2 bits (243), Expect = 2.080e-23
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQERD-GRPQLEREVFAHNLISMATAMVTAP 276
            E++ EDP   DP VQ  LD TGG  VYGLLE R+P L  D+R ER+SL+T FIL +VA+RAR  ER+ GR QL  + F  NL++MA AM+ AP
Sbjct:  116 EVIQEDPASVDPEVQRTLDSTGGVQVYGLLERRLPPLPDDIRIERISLMTMFILHSVAERARLAERETGRGQLGTDRFVANLVAMAAAMMLAP 208
[Close]
BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Match: A0A6G6WFW3_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Nocardioides anomalus TaxID=2712223 RepID=A0A6G6WFW3_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 2.680e-23
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVTSFILRTVADRARSQER-DGRPQLEREVFAHNLISMATAMVTAP 276
            ELV       DP V A L +TGG  V+ L+ ERMP +  DLR ER+SL+T F+LR++ADRAR+ +R +GRPQL+ E F  NLI+M+TAM+TAP
Sbjct:  112 ELVEVPLASMDPEVAAMLTKTGGEPVFALIHERMPPMSDDLRVERVSLLTLFVLRSIADRARAADRANGRPQLDTETFTGNLIAMSTAMLTAP 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128249.5684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
UPI001FD1ACF53.980e-2657.45TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A2E0MPE0_PIMSR4.080e-2658.06TetR family transcriptional regulator n=1 Tax=Pime... [more]
A0A1V1VXZ1_9ACTN7.100e-2566.27TetR family transcriptional regulator n=1 Tax=Noca... [more]
A0A1G6J2F5_9ACTN1.230e-2454.74Regulatory protein, tetR family n=1 Tax=Nocardioid... [more]
UPI0011DFC5E62.290e-2456.70TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001123C5153.980e-2457.45TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A6L7EYZ8_9ACTN5.750e-2454.26TetR family transcriptional regulator n=2 Tax=Noca... [more]
A0A1H0F9P6_9ACTN1.350e-2353.26Transcriptional regulator, TetR family n=1 Tax=Noc... [more]
UPI001968263E2.080e-2355.91TetR family transcriptional regulator n=1 Tax=Noca... [more]
A0A6G6WFW3_9ACTN2.680e-2354.84TetR/AcrR family transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128249contigM-pyrifera_M_contig128249:2..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score90.1
Seed ortholog evalue6.2e-16
Seed eggNOG ortholog196162.Noca_3522
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transcriptional regulator
EggNOG OGsCOG1309@1,COG1309@2
COG Functional cat.K
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.959592-CDS-M-pyrifera_M_contig128249:1..3011622815795.959592-CDS-M-pyrifera_M_contig128249:1..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128249 2..301 +
1692277573.4860015-CDS-M-pyrifera_M_contig128249:1..3011692277573.4860015-CDS-M-pyrifera_M_contig128249:1..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128249 2..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128249.5684.1prot_M-pyrifera_M_contig128249.5684.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128249 2..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128249.5684.1

>prot_M-pyrifera_M_contig128249.5684.1 ID=prot_M-pyrifera_M_contig128249.5684.1|Name=mRNA_M-pyrifera_M_contig128249.5684.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
ELVNEDPGDRDPAVQAALDRTGGYAVYGLLEERMPALDADLRSERLSLVT
SFILRTVADRARSQERDGRPQLEREVFAHNLISMATAMVTAPARAPVAS*
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mRNA from alignment at M-pyrifera_M_contig128249:2..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128249.5684.1 ID=mRNA_M-pyrifera_M_contig128249.5684.1|Name=mRNA_M-pyrifera_M_contig128249.5684.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig128249:2..301+ (Macrocystis pyrifera P11B4 male)
GAACTGGTCAACGAGGATCCCGGCGATCGCGATCCCGCCGTGCAGGCCGC
GCTCGACCGGACCGGCGGCTACGCCGTCTACGGCTTGTTGGAGGAGCGCA
TGCCCGCGCTCGACGCCGACCTGCGTTCCGAGCGTCTCTCCCTCGTCACC
AGCTTCATCCTGCGCACGGTCGCCGACCGGGCCCGATCCCAAGAGCGCGA
CGGGCGACCGCAGCTTGAGCGTGAGGTGTTCGCACACAACCTCATCTCCA
TGGCCACCGCGATGGTCACCGCGCCGGCCCGTGCGCCGGTCGCGAGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128249:2..301+

>mRNA_M-pyrifera_M_contig128249.5684.1 ID=mRNA_M-pyrifera_M_contig128249.5684.1|Name=mRNA_M-pyrifera_M_contig128249.5684.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig128249:2..301+ (Macrocystis pyrifera P11B4 male)
GAACTGGTCAACGAGGATCCCGGCGATCGCGATCCCGCCGTGCAGGCCGC
GCTCGACCGGACCGGCGGCTACGCCGTCTACGGCTTGTTGGAGGAGCGCA
TGCCCGCGCTCGACGCCGACCTGCGTTCCGAGCGTCTCTCCCTCGTCACC
AGCTTCATCCTGCGCACGGTCGCCGACCGGGCCCGATCCCAAGAGCGCGA
CGGGCGACCGCAGCTTGAGCGTGAGGTGTTCGCACACAACCTCATCTCCA
TGGCCACCGCGATGGTCACCGCGCCGGCCCGTGCGCCGGTCGCGAGTTGA
GAACTGGTCAACGAGGATCCCGGCGATCGCGATCCCGCCGTGCAGGCCGC
GCTCGACCGGACCGGCGGCTACGCCGTCTACGGCTTGTTGGAGGAGCGCA
TGCCCGCGCTCGACGCCGACCTGCGTTCCGAGCGTCTCTCCCTCGTCACC
AGCTTCATCCTGCGCACGGTCGCCGACCGGGCCCGATCCCAAGAGCGCGA
CGGGCGACCGCAGCTTGAGCGTGAGGTGTTCGCACACAACCTCATCTCCA
TGGCCACCGCGATGGTCACCGCGCCGGCCCGTGCGCCGGTCGCGAGTTGA
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