mRNA_M-pyrifera_M_contig128206.5671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128206.5671.1
Unique NamemRNA_M-pyrifera_M_contig128206.5671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A6I6AB10_9PLAN (Tetratricopeptide repeat protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AB10_9PLAN)

HSP 1 Score: 233 bits (595), Expect = 3.530e-68
Identity = 129/167 (77.25%), Postives = 130/167 (77.84%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSNHS 501
            FLDSDNRELRE                                   ELIKRKDNASEALAMEYVLQQMQ SLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKV+LIKTLASIGDESVEDRFVKYYPGA QTEKLLILSTLQKLESPQFFELARQALDDSNHS
Sbjct:  478 FLDSDNRELREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELIKRKDNASEALAMEYVLQQMQHSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVMLIKTLASIGDESVEDRFVKYYPGAQQTEKLLILSTLQKLESPQFFELARQALDDSNHS 644          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A517R8K6_9PLAN (Lipoprotein NlpI n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R8K6_9PLAN)

HSP 1 Score: 224 bits (571), Expect = 4.590e-65
Identity = 112/167 (67.07%), Postives = 144/167 (86.23%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSNHS 501
            FLDS + ELR+AAI+ALVLNGHP+LF+VL+DAL SP  ++  VAF+ELIKRKD+ASEALA+ YVL+Q+QQ+ PT +ML FIDR+KDPRAIPLLFQHL+  KL+AGL++L +KTLASIGD++++++F+KYYP A  TEK+LILS+LQ+LESP FF LA QAL+D   S
Sbjct:  477 FLDSKDLELRKAAIKALVLNGHPQLFDVLTDALNSPYADLNQVAFQELIKRKDSASEALAINYVLEQLQQTPPTQEMLKFIDRLKDPRAIPLLFQHLQGSKLEAGLRILTLKTLASIGDQTIDEKFLKYYPQANSTEKVLILSSLQQLESPHFFNLAEQALNDKEQS 643          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A3D3R2Y7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R2Y7_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 1.740e-63
Identity = 111/165 (67.27%), Postives = 140/165 (84.85%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSN 495
            F+ SD+ ELR+AAI+ALVLNGHPRLFE+L++AL+SP  EIR VAF+ELI++KDN SEALA+ YVL Q++Q+ PT  MLSF+DR+KDPRAIPLLF HLE  KLDAGL+V +I TLASIGD++VE  F+K YP A   EK LI+++LQK++SPQ+FELA QAL+DSN
Sbjct:  129 FISSDDLELRKAAIKALVLNGHPRLFEILTNALQSPNPEIREVAFQELIQQKDNESEALALNYVLSQLEQTAPTRAMLSFLDRLKDPRAIPLLFHHLENLKLDAGLRVAIINTLASIGDQTVEAGFLKVYPQANSNEKQLIVTSLQKIDSPQYFELAEQALNDSN 293          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A6C882_9PLAN (Tetratricopeptide repeat domain containing protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C882_9PLAN)

HSP 1 Score: 216 bits (549), Expect = 6.670e-62
Identity = 110/165 (66.67%), Postives = 138/165 (83.64%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSN 495
            F+ SD+ ELR+AAI+ALVLNGHPRLFE+L++AL+SP  EIR VAF+ELI++KDN SE LA+ YVL Q++Q+ PT  MLSF+DRMKDPRAIP LF HLE  KLDAGL+V +I TLASIGD++VE  F+K YP A   EK LI+++LQK++SPQ+FELA QAL+DSN
Sbjct:  472 FISSDDLELRKAAIKALVLNGHPRLFEILTNALQSPNPEIREVAFQELIQQKDNESEVLALNYVLSQLEQTAPTRAMLSFLDRMKDPRAIPFLFHHLENLKLDAGLRVAIINTLASIGDQTVEAGFLKVYPQANSNEKQLIVTSLQKIDSPQYFELAEQALNDSN 636          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A518I5D1_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I5D1_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 6.320e-61
Identity = 105/167 (62.87%), Postives = 140/167 (83.83%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSNHS 501
            FLDS+N  L EAAI+ALVLNGHP+L EVL+  L SP   +R VAF+EL+KRKD+ASEALA++YVL Q+Q++ PT +ML+FIDR+KD RAIPLLF+HL+K KL+ GL+V++IKTLASIGD++V++ F+K+YP A   EK+LILS LQK+ESP +++LA QAL+D N +
Sbjct:  479 FLDSENLGLHEAAIKALVLNGHPQLLEVLTQTLSSPHANLREVAFQELVKRKDSASEALAIDYVLMQLQKTPPTQEMLTFIDRLKDARAIPLLFRHLQKSKLETGLRVMVIKTLASIGDQTVDEEFLKFYPQANSNEKVLILSALQKMESPHYYKLAAQALNDKNQT 645          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A3C0AE66_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AE66_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 2.270e-56
Identity = 102/165 (61.82%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSN 495
            F+ SDN ELR+AAI+ALVLNGHPRL E+L+  LKS   EIR VAF+ELI++KDN SE LA+ YVL Q++Q+ PT  ML+F+DR+KDPRAIPLLF HLE  KLD+G ++ +I TLASIGD+++E  F+K YP     EK LILS LQK++SP +FEL  QAL DS+
Sbjct:  474 FVSSDNLELRKAAIKALVLNGHPRLIEILTAGLKSSNPEIREVAFQELIQQKDNQSETLALNYVLSQLEQTPPTQTMLAFLDRLKDPRAIPLLFHHLENLKLDSGSRIAIINTLASIGDQTLETGFLKVYPQVNSQEKQLILSALQKVDSPHYFELVEQALHDSD 638          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A517ZZW6_9PLAN (Lipoprotein NlpI n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZW6_9PLAN)

HSP 1 Score: 199 bits (506), Expect = 4.490e-56
Identity = 102/121 (84.30%), Postives = 113/121 (93.39%), Query Frame = 1
Query:  139 ELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSNHS 501
            ELIKR+DNASE+LAM+YVLQQ+QQS PT +ML+FIDRMKDPRAIPLLFQHLEKDKLDAGLK+ LIKTLASIGDESVE RF+ YYP AL TEKLLILSTLQKLESPQFF+LA+QAL DSNH+
Sbjct:  524 ELIKRRDNASESLAMDYVLQQLQQSAPTTEMLTFIDRMKDPRAIPLLFQHLEKDKLDAGLKISLIKTLASIGDESVEARFLAYYPRALPTEKLLILSTLQKLESPQFFQLAKQALSDSNHT 644          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A2E2BZ88_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BZ88_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 8.390e-56
Identity = 102/165 (61.82%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSN 495
            F+ SDN ELR+AAI+ALVLNGHPRL E+L+  LKS   EIR VAF+ELI++KDN SE LA+ YVL Q++Q+ PT  ML+F+DR+KDPRAIPLLF HLE  KLD+G ++ +I TLASIGD+++E  F+K YP     EK LILS LQK++SP +FEL  QAL DS+
Sbjct:  474 FVSSDNLELRKAAIKALVLNGHPRLIEILTAGLKSSNPEIREVAFQELIQQKDNQSETLALNYVLSQLEQTPPTQTMLAFLDRLKDPRAIPLLFHHLENLKLDSGSRIAIINTLASIGDQTLETGFLKVYPQVNSQEKQLILSALQKVDSPHYFELVEQALHDSD 638          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A517V6L3_9PLAN (Lipoprotein NlpI n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V6L3_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 2.480e-42
Identity = 86/165 (52.12%), Postives = 115/165 (69.70%), Query Frame = 1
Query:    1 FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSN 495
            F+ SDN ELR+AAI+AL+LN                           LI++KDN SE LA+ YVL Q++Q+ PT  ML+F+DR+KD RAIPLLF+HLE  KLD+GL+V +IKTLASIGD++VE  F+K YP A   EKL+ILS+LQ+++SP ++EL  QAL+DS+
Sbjct:  471 FISSDNLELRKAAIQALILNXXXXXXXXXXXXXXXXXXXXXXXXXXXLIQQKDNESETLALNYVLSQLKQTAPTQAMLTFLDRLKDQRAIPLLFRHLENPKLDSGLRVAVIKTLASIGDQTVESGFLKVYPQAKVNEKLVILSSLQEVDSPHYYELVEQALNDSD 635          
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Match: A0A517W493_9PLAN (TPR repeat-containing protein YrrB n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W493_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 6.130e-35
Identity = 70/121 (57.85%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  139 ELIKRKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKDKLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLESPQFFELARQALDDSNHS 501
            ELIKRKD+ SE LAM YVL Q++ ++P+  ML+FI+R+KDPR IPLL QHL+  KLD G +  ++K+LA+IGD +V+  F+K YP A   EKLLIL++LQKL SPQ+F+LA +A+ DSN S
Sbjct:  523 ELIKRKDSKSETLAMNYVLSQLEHTVPSQQMLTFINRLKDPRTIPLLAQHLQDPKLDTGTRTAILKSLAAIGDLTVDVEFLKIYPQASAAEKLLILTSLQKLGSPQYFKLAEEAIQDSNLS 643          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128206.5671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6I6AB10_9PLAN3.530e-6877.25Tetratricopeptide repeat protein n=6 Tax=Gimesia T... [more]
A0A517R8K6_9PLAN4.590e-6567.07Lipoprotein NlpI n=1 Tax=Gimesia alba TaxID=252797... [more]
A0A3D3R2Y7_9PLAN1.740e-6367.27Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A6C882_9PLAN6.670e-6266.67Tetratricopeptide repeat domain containing protein... [more]
A0A518I5D1_9PLAN6.320e-6162.87Tetratricopeptide repeat protein n=1 Tax=Gimesia f... [more]
A0A3C0AE66_9PLAN2.270e-5661.82Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517ZZW6_9PLAN4.490e-5684.30Lipoprotein NlpI n=3 Tax=Gimesia panareensis TaxID... [more]
A0A2E2BZ88_9PLAN8.390e-5661.82Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517V6L3_9PLAN2.480e-4252.12Lipoprotein NlpI n=1 Tax=Gimesia algae TaxID=25279... [more]
A0A517W493_9PLAN6.130e-3557.85TPR repeat-containing protein YrrB n=1 Tax=Gimesia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128206contigM-pyrifera_M_contig128206:2..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score219.5
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog344747.PM8797T_07784
Preferred namecpeY
KEGG koko:K05385
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.deoxyhypusine monooxygenase activity
EggNOG OGsCOG0457@1,COG0457@2,COG1413@1,COG1413@2
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.4153206-CDS-M-pyrifera_M_contig128206:1..5021622815795.4153206-CDS-M-pyrifera_M_contig128206:1..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128206 2..502 +
1692277573.2425468-CDS-M-pyrifera_M_contig128206:1..5021692277573.2425468-CDS-M-pyrifera_M_contig128206:1..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128206 2..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128206.5671.1prot_M-pyrifera_M_contig128206.5671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128206 2..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128206.5671.1

>prot_M-pyrifera_M_contig128206.5671.1 ID=prot_M-pyrifera_M_contig128206.5671.1|Name=mRNA_M-pyrifera_M_contig128206.5671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
FLDSDNRELREAAIRALVLNGHPRLFEVLSDALKSPEEEIRNVAFKELIK
RKDNASEALAMEYVLQQMQQSLPTGDMLSFIDRMKDPRAIPLLFQHLEKD
KLDAGLKVLLIKTLASIGDESVEDRFVKYYPGALQTEKLLILSTLQKLES
PQFFELARQALDDSNHS
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mRNA from alignment at M-pyrifera_M_contig128206:2..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128206.5671.1 ID=mRNA_M-pyrifera_M_contig128206.5671.1|Name=mRNA_M-pyrifera_M_contig128206.5671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig128206:2..502+ (Macrocystis pyrifera P11B4 male)
TTTCTGGACAGCGACAACCGGGAGCTGCGTGAGGCGGCCATCCGGGCACT GGTTTTGAACGGGCACCCCCGCCTGTTCGAAGTCCTCAGCGACGCCCTTA AGTCCCCCGAAGAAGAAATTCGCAATGTCGCTTTCAAGGAATTAATCAAA CGTAAGGACAATGCGAGTGAAGCCCTGGCCATGGAATATGTCCTGCAGCA GATGCAGCAGTCACTGCCCACAGGAGACATGCTCAGCTTCATCGACCGCA TGAAAGATCCGCGGGCGATTCCCCTGTTGTTTCAACACCTGGAAAAAGAC AAACTGGACGCCGGCCTGAAGGTCTTGCTCATCAAAACGCTGGCTTCCAT CGGTGATGAATCCGTCGAGGACCGGTTTGTTAAGTATTACCCCGGTGCCC TGCAGACCGAAAAACTGCTGATCCTCTCCACGCTCCAGAAACTGGAATCG CCCCAGTTCTTTGAACTCGCCAGGCAGGCACTGGACGACAGCAATCATTC G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128206:2..502+

>mRNA_M-pyrifera_M_contig128206.5671.1 ID=mRNA_M-pyrifera_M_contig128206.5671.1|Name=mRNA_M-pyrifera_M_contig128206.5671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig128206:2..502+ (Macrocystis pyrifera P11B4 male)
TTTCTGGACAGCGACAACCGGGAGCTGCGTGAGGCGGCCATCCGGGCACT
GGTTTTGAACGGGCACCCCCGCCTGTTCGAAGTCCTCAGCGACGCCCTTA
AGTCCCCCGAAGAAGAAATTCGCAATGTCGCTTTCAAGGAATTAATCAAA
CGTAAGGACAATGCGAGTGAAGCCCTGGCCATGGAATATGTCCTGCAGCA
GATGCAGCAGTCACTGCCCACAGGAGACATGCTCAGCTTCATCGACCGCA
TGAAAGATCCGCGGGCGATTCCCCTGTTGTTTCAACACCTGGAAAAAGAC
AAACTGGACGCCGGCCTGAAGGTCTTGCTCATCAAAACGCTGGCTTCCAT
CGGTGATGAATCCGTCGAGGACCGGTTTGTTAAGTATTACCCCGGTGCCC
TGCAGACCGAAAAACTGCTGATCCTCTCCACGCTCCAGAAACTGGAATCG
CCCCAGTTCTTTGAACTCGCCAGGCAGGCACTGGACGACAGCAATCATTC
GTTTCTGGACAGCGACAACCGGGAGCTGCGTGAGGCGGCCATCCGGGCAC
TGGTTTTGAACGGGCACCCCCGCCTGTTCGAAGTCCTCAGCGACGCCCTT
AAGTCCCCCGAAGAAGAAATTCGCAATGTCGCTTTCAAGGAATTAATCAA
ACGTAAGGACAATGCGAGTGAAGCCCTGGCCATGGAATATGTCCTGCAGC
AGATGCAGCAGTCACTGCCCACAGGAGACATGCTCAGCTTCATCGACCGC
ATGAAAGATCCGCGGGCGATTCCCCTGTTGTTTCAACACCTGGAAAAAGA
CAAACTGGACGCCGGCCTGAAGGTCTTGCTCATCAAAACGCTGGCTTCCA
TCGGTGATGAATCCGTCGAGGACCGGTTTGTTAAGTATTACCCCGGTGCC
CTGCAGACCGAAAAACTGCTGATCCTCTCCACGCTCCAGAAACTGGAATC
GCCCCAGTTCTTTGAACTCGCCAGGCAGGCACTGGACGACAGCAATCATT
CG
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