mRNA_M-pyrifera_M_contig128195.5665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128195.5665.1
Unique NamemRNA_M-pyrifera_M_contig128195.5665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig128195.5665.1 vs. uniprot
Match: A0A8J4AUV9_9CHLO (Mcl1_mid domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AUV9_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.190e-8
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    1 ATSRRLLRIFGVSGTQECPILLDGAVVAMAGRGPLLFVVTRASAAE--TWGQPLRWHLFACPDARSTLGSGSMALRPGVDLAWIGVTPE-GMAVAADSDGVV 297
            ATSR+LLR+F ++G+Q   I L+G  VAMA  G LL VV  A      T  Q L   L+    A S + S  + L PG  LAW+G T + G+   +DS GVV
Sbjct:  593 ATSRQLLRLFSLAGSQTSIIRLEGPPVAMAAVGSLLAVVWHAGPPNPHTKSQQLSMSLYDTT-AMSCIFSQPLPLTPGSLLAWLGFTEDHGLPAVSDSQGVV 693
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BLAST of mRNA_M-pyrifera_M_contig128195.5665.1 vs. uniprot
Match: A0A835XKW3_9CHLO (Mcl1_mid domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKW3_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 2.650e-7
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:    1 ATSRRLLRIFGVSGTQECPILLDGAVVAMAGRGPLLFVVTRASAAE--TWGQPLRWHLFACPDARSTLGSGSMALRPGVDLAWIGVTPE-GMAVAADSDGVV 297
            ATSR LLR+F ++G+Q   + LDG  +AMA  GPLL V   +      T  Q +   L+          +  + L PG  L+W+G T + G+   ADS+GV+
Sbjct:  583 ATSRLLLRLFSLAGSQTALLRLDGPPLAMAAAGPLLLVAFHSGPPNQHTKSQSISVSLYDTIQMACVF-TQPLPLTPGASLSWLGFTEDHGLPAVADSEGVI 683
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BLAST of mRNA_M-pyrifera_M_contig128195.5665.1 vs. uniprot
Match: A0A8J4G0F0_9CHLO (Mcl1_mid domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G0F0_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 8.900e-7
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    1 ATSRRLLRIFGVSGTQECPILLDGAVVAMAGRGPLLFVVTRASAAE--TWGQPLRWHLFACPDARSTLGSGSMALRPGVDLAWIGVTPE-GMAVAADSDGVV 297
            ATSR+LLR+F ++G+Q     L+G  VAMA  G LL +V  A      T  Q L   ++    A S + S  + L PG  L W+G T + G+   ADS GVV
Sbjct:  152 ATSRQLLRLFSLAGSQTAISRLEGPPVAMAAVGSLLAIVWHAGPPNPHTKSQQLFMSMYDTT-AMSCVFSQPLPLTPGSLLTWLGFTEDHGLPAVADSQGVV 252
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BLAST of mRNA_M-pyrifera_M_contig128195.5665.1 vs. uniprot
Match: A0A8J4C569_9CHLO (Mcl1_mid domain-containing protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C569_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 9.220e-7
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    1 ATSRRLLRIFGVSGTQECPILLDGAVVAMAGRGPLLFVVTRASAAE--TWGQPLRWHLFACPDARSTLGSGSMALRPGVDLAWIGVTPE-GMAVAADSDGVV 297
            ATSR+LLR+F ++G+Q     L+G  VAMA  G LL +V  A      T  Q L   ++    A S + S  + L PG  L W+G T + G+   ADS GVV
Sbjct:  622 ATSRQLLRLFSLAGSQTAISRLEGPPVAMAAVGSLLAIVWHAGPPNPHTKSQQLFMSMYDTT-AMSCVFSQPLPLTPGSLLTWLGFTEDHGLPAVADSQGVV 722
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128195.5665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8J4AUV9_9CHLO2.190e-843.14Mcl1_mid domain-containing protein n=2 Tax=Volvox ... [more]
A0A835XKW3_9CHLO2.650e-736.27Mcl1_mid domain-containing protein n=1 Tax=Edaphoc... [more]
A0A8J4G0F0_9CHLO8.900e-740.20Mcl1_mid domain-containing protein n=1 Tax=Volvox ... [more]
A0A8J4C569_9CHLO9.220e-740.20Mcl1_mid domain-containing protein n=3 Tax=Volvox ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128195contigM-pyrifera_M_contig128195:3..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.9
Seed ortholog evalue3.9e-10
Seed eggNOG ortholog3075.A0A087SBW8
KEGG koko:K11274
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Minichromosome loss protein, Mcl1, middle region
EggNOG OGs34HPD@3041,37JXC@33090,KOG1274@1,KOG1274@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815795.139678-CDS-M-pyrifera_M_contig128195:2..1951622815795.139678-CDS-M-pyrifera_M_contig128195:2..195Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128195 3..195 +
1692277573.094485-CDS-M-pyrifera_M_contig128195:2..1951692277573.094485-CDS-M-pyrifera_M_contig128195:2..195Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128195 3..195 +
1622815795.1522312-CDS-M-pyrifera_M_contig128195:381..4851622815795.1522312-CDS-M-pyrifera_M_contig128195:381..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128195 382..485 +
1692277573.1104858-CDS-M-pyrifera_M_contig128195:381..4851692277573.1104858-CDS-M-pyrifera_M_contig128195:381..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128195 382..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128195.5665.1prot_M-pyrifera_M_contig128195.5665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128195 3..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128195.5665.1

>prot_M-pyrifera_M_contig128195.5665.1 ID=prot_M-pyrifera_M_contig128195.5665.1|Name=mRNA_M-pyrifera_M_contig128195.5665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ATSRRLLRIFGVSGTQECPILLDGAVVAMAGRGPLLFVVTRASAAETWGQ
PLRWHLFACPDARSTLGSGSMALRPGVDLAWIGVTPEGMAVAADSDGVV
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mRNA from alignment at M-pyrifera_M_contig128195:3..485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128195.5665.1 ID=mRNA_M-pyrifera_M_contig128195.5665.1|Name=mRNA_M-pyrifera_M_contig128195.5665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig128195:3..485+ (Macrocystis pyrifera P11B4 male)
GCAACCTCTCGCCGCCTGTTGCGCATTTTCGGTGTATCTGGTACACAAGA
ATGCCCTATCCTCCTTGATGGCGCAGTAGTGGCGATGGCAGGAAGAGGAC
CTTTGCTTTTCGTAGTGACAAGAGCCTCTGCAGCTGAAACTTGGGGACAA
CCATTGCGTTGGCATCTCTTTGCTTGTCCCGATGCTCGTTCAAGTGCCAT
CGGGAGTGCTCCTGGTGTCATGGGTTCCACAGCATCTCGTTCTTCCTCAG
CTTCCTCTTCCGCTTCGTCTTCTCTTCCTTCCGCTCGGTTTGGTGCAGCT
GGAATGGTTGGAGTGGGTGGATTGGTGGGTGCTGGTGGAGTTGGTTCGAG
TGGTGTTGGGATGGGTCCTGGGTTGCGAGCTTTGGGGAGTGGGAGCATGG
CTTTGCGTCCTGGAGTGGACTTGGCTTGGATTGGGGTGACTCCGGAGGGG
ATGGCGGTGGCTGCGGATTCGGACGGTGTGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128195:3..485+

>mRNA_M-pyrifera_M_contig128195.5665.1 ID=mRNA_M-pyrifera_M_contig128195.5665.1|Name=mRNA_M-pyrifera_M_contig128195.5665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig128195:3..485+ (Macrocystis pyrifera P11B4 male)
GCAACCTCTCGCCGCCTGTTGCGCATTTTCGGTGTATCTGGTACACAAGA
ATGCCCTATCCTCCTTGATGGCGCAGTAGTGGCGATGGCAGGAAGAGGAC
CTTTGCTTTTCGTAGTGACAAGAGCCTCTGCAGCTGAAACTTGGGGACAA
CCATTGCGTTGGCATCTCTTTGCTTGTCCCGATGCTCGTTCAAGCAACCT
CTCGCCGCCTGTTGCGCATTTTCGGTGTATCTGGTACACAAGAATGCCCT
ATCCTCCTTGATGGCGCAGTAGTGGCGATGGCAGGAAGAGGACCTTTGCT
TTTCGTAGTGACAAGAGCCTCTGCAGCTGAAACTTGGGGACAACCATTGC
GTTGGCATCTCTTTGCTTGTCCCGATGCTCGTTCAACTTTGGGGAGTGGG
AGCATGGCTTTGCGTCCTGGAGTGGACTTGGCTTGGATTGGGGTGACTCC
GGAGGGGATGGCGGTGGCTGCGGATTCGGACGGTGTGGTTCTTTGGGGAG
TGGGAGCATGGCTTTGCGTCCTGGAGTGGACTTGGCTTGGATTGGGGTGA
CTCCGGAGGGGATGGCGGTGGCTGCGGATTCGGACGGTGTGGTT
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