mRNA_M-pyrifera_M_contig128171.5661.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128171.5661.1
Unique NamemRNA_M-pyrifera_M_contig128171.5661.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: A0A7S4MMC0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMC0_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 2.160e-17
Identity = 33/68 (48.53%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKHQRMEYWMKYIKSMCPEA--LLVMVGTH 198
            + F  N WDFGGQ++YYPTH FFLS+ + +++VF+F++++ QR+EYW K +KS C  +  + ++VGTH
Sbjct:  333 KQFVINFWDFGGQIIYYPTHHFFLSAHSAYIIVFDFSNVRWQRLEYWFKQLKSQCDSSSIIAILVGTH 400          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: A0A7S4HXS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HXS1_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 3.990e-16
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   13 FNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKHQRMEYWMKYIKSMCPE---ALLVMVGTH 198
            FN WD GGQ V+YPTHQFFL+S ++++LVFN  ++   RMEYWM+ IKS+      A + +VGTH
Sbjct:   47 FNAWDLGGQEVFYPTHQFFLTSNSVYLLVFNLLEMNSSRMEYWMRLIKSLSQNSRRAPIFIVGTH 111          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: UPI000644F753 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F753)

HSP 1 Score: 76.6 bits (187), Expect = 8.830e-15
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCPEAL---LVMVGTH 198
            +  DF+ WDFGGQ V+YPTHQFFL+S+AL+++VF   D    +R+EYW++ IKS+C   +   L  VGTH
Sbjct:  446 KKIDFSAWDFGGQQVFYPTHQFFLTSRALYLVVFKLTDANWAERVEYWIRQIKSICEYGIKPALFFVGTH 515          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: D3BL41_POLPP (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL41_POLPP)

HSP 1 Score: 76.3 bits (186), Expect = 1.210e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCPEAL---LVMVGTH 198
            +  DF+ WDFGGQ V+YPTHQFFL+S+AL+++VF   D    +R+EYW++ IKS+C   +   L  VGTH
Sbjct:  448 KKIDFSAWDFGGQQVFYPTHQFFLTSRALYLVVFKLTDSNWAERVEYWIRQIKSICEGGIKPALFFVGTH 517          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: UPI00064518B4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064518B4)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCPEAL---LVMVGTH 198
            +  +F+ WDFGGQ V+YPTHQFFL+S AL+++VFN AD    +R+EYW++ IKS+C       +  VGTH
Sbjct:  435 KEIEFSAWDFGGQQVFYPTHQFFLTSSALYLVVFNVADPNWAERVEYWIRQIKSICDYGFKPSIFFVGTH 504          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: UPI0006450F43 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450F43)

HSP 1 Score: 75.5 bits (184), Expect = 2.250e-14
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    4 SFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCP--EALLVMVGTH 198
            S +F+ WDFGGQ V+YPTHQFFL+S+AL++LVFN +D    +R++YW++ IK +C     L+  +GTH
Sbjct:  519 SIEFSAWDFGGQQVFYPTHQFFLTSRALYMLVFNVSDPDWAERVDYWVRQIKYICEGDRPLIFFIGTH 586          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: A0A8J4PS68_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PS68_9MYCE)

HSP 1 Score: 74.3 bits (181), Expect = 5.740e-14
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCPEAL--LVMVGTH 198
            +  +F+ WDFGGQ V+YPTHQFFL+S+AL+++VF   D    +R+EYW++ +KS+C   +  + +VGTH
Sbjct:  418 KKIEFSAWDFGGQQVFYPTHQFFLTSKALYLVVFKLTDPNFAERVEYWVRQVKSICEGGVPAIFLVGTH 486          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: F4QDD0_CAVFA (Leucine-rich repeat-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QDD0_CAVFA)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   10 DFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCPEAL---LVMVGTH 198
            DF+ WDFGGQ V+YPTHQFFL+++AL+++ F   D    +R+EYW++ IKS+C   +   L  VGTH
Sbjct:  350 DFSAWDFGGQQVFYPTHQFFLTARALYLVTFKLTDSNWAERVEYWIRQIKSICEAGMKPALFFVGTH 416          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: A0A151ZFK2_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFK2_9MYCE)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKH-QRMEYWMKYIKSMCPEAL--LVMVGTH 198
            +  DF  WDFGGQ V+YPTHQFFL+S+AL+++VF   D    +R+EYW++ +KS+C   +  + +VGTH
Sbjct:  422 KKMDFLGWDFGGQQVFYPTHQFFLTSRALYLVVFRLTDPNFAERVEYWVRQVKSICEGGVPAIFIVGTH 490          
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Match: A0A2P6N067_9EUKA (Non-specific serine/threonine protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N067_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 2.730e-13
Identity = 31/64 (48.44%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   10 DFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFAD-LKHQRMEYWMKYIKSMCPEALLVMVGTH 198
            D++ WDF GQ  YY +HQFFLSS+A++V+V+N  + L   ++EYW++ IK+  P+A +++VGTH
Sbjct:  443 DWSAWDFDGQEAYYSSHQFFLSSRAIYVIVWNLENTLDQSKLEYWLQSIKARAPKAPIIIVGTH 506          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128171.5661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MMC0_9EUKA2.160e-1748.53Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4HXS1_9EUKA3.990e-1653.85Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI000644F7538.830e-1551.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BL41_POLPP1.210e-1451.43Non-specific serine/threonine protein kinase n=1 T... [more]
UPI00064518B41.650e-1451.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI0006450F432.250e-1451.47hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PS68_9MYCE5.740e-1447.83Non-specific serine/threonine protein kinase n=1 T... [more]
F4QDD0_CAVFA1.070e-1350.75Leucine-rich repeat-containing protein n=1 Tax=Cav... [more]
A0A151ZFK2_9MYCE2.000e-1349.28Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2P6N067_9EUKA2.730e-1348.44Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128171contigM-pyrifera_M_contig128171:191..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog529818.AMSG_07673T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.9958975-CDS-M-pyrifera_M_contig128171:190..3881622815794.9958975-CDS-M-pyrifera_M_contig128171:190..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128171 191..388 +
1692277573.0341465-CDS-M-pyrifera_M_contig128171:190..3881692277573.0341465-CDS-M-pyrifera_M_contig128171:190..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128171 191..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128171.5661.1prot_M-pyrifera_M_contig128171.5661.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128171 191..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128171.5661.1

>prot_M-pyrifera_M_contig128171.5661.1 ID=prot_M-pyrifera_M_contig128171.5661.1|Name=mRNA_M-pyrifera_M_contig128171.5661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
QSFDFNVWDFGGQVVYYPTHQFFLSSQALFVLVFNFADLKHQRMEYWMKY
IKSMCPEALLVMVGTH
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mRNA from alignment at M-pyrifera_M_contig128171:191..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128171.5661.1 ID=mRNA_M-pyrifera_M_contig128171.5661.1|Name=mRNA_M-pyrifera_M_contig128171.5661.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig128171:191..388+ (Macrocystis pyrifera P11B4 male)
CAGTCCTTCGACTTCAACGTCTGGGATTTTGGTGGCCAGGTGGTGTATTA TCCCACACACCAGTTCTTTCTTTCTTCGCAAGCTCTCTTCGTTCTCGTTT TCAACTTCGCAGACCTCAAGCACCAGCGCATGGAGTACTGGATGAAGTAC ATCAAGAGCATGTGCCCAGAGGCCCTCCTTGTGATGGTGGGCACGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128171:191..388+

>mRNA_M-pyrifera_M_contig128171.5661.1 ID=mRNA_M-pyrifera_M_contig128171.5661.1|Name=mRNA_M-pyrifera_M_contig128171.5661.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig128171:191..388+ (Macrocystis pyrifera P11B4 male)
CAGTCCTTCGACTTCAACGTCTGGGATTTTGGTGGCCAGGTGGTGTATTA
TCCCACACACCAGTTCTTTCTTTCTTCGCAAGCTCTCTTCGTTCTCGTTT
TCAACTTCGCAGACCTCAAGCACCAGCGCATGGAGTACTGGATGAAGTAC
ATCAAGAGCATGTGCCCAGAGGCCCTCCTTGTGATGGTGGGCACGCACCA
GTCCTTCGACTTCAACGTCTGGGATTTTGGTGGCCAGGTGGTGTATTATC
CCACACACCAGTTCTTTCTTTCTTCGCAAGCTCTCTTCGTTCTCGTTTTC
AACTTCGCAGACCTCAAGCACCAGCGCATGGAGTACTGGATGAAGTACAT
CAAGAGCATGTGCCCAGAGGCCCTCCTTGTGATGGTGGGCACGCAC
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