mRNA_M-pyrifera_M_contig102602.566.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102602.566.1
Unique NamemRNA_M-pyrifera_M_contig102602.566.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102602.566.1 vs. uniprot
Match: A0A5A8E468_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E468_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 1.240e-18
Identity = 63/175 (36.00%), Postives = 94/175 (53.71%), Query Frame = 1 
Query:    1 MDLFLQASEAHRAYVERQQDLAFRRIERFRHQIDDTRRSVDRRVEQLRTVANLAALLTGFEAVVLVETNLTDQNAPVWLIGLFAATTAFALLLFLLSKVTASLILVPVLEFNEVGSVMESDD-DFPTMWRKYFSRDWRWTKKFFLYGVHFFFGSVITLGWIRFLPDFYAPGIISV 522
            M+L  Q SEA R   ERQQDLA+R+IER   ++DD R SV+++   L  VANLAAL+ G E VVLVE      N    ++  FA  ++ A+   +++  TA +++V +  F+   +V+     DF   W+     +W      F+ G+     S+  L W+RF     AP I+SV
Sbjct:    1 MELVFQTSEARRRLKERQQDLAYRKIERIWRRVDDMRLSVEKQSRALAAVANLAALVGGLELVVLVEAQFNVPNPSQLMLACFALFSSLAVGAMVIAAATALMLMVRISHFDVKHAVIHHRALDFARYWQLRCKGEWWLCLASFVVGLPCLLVSLALLAWLRFEGGVAAPVIVSV 175
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BLAST of mRNA_M-pyrifera_M_contig102602.566.1 vs. uniprot
Match: A0A2R5G3Z6_9STRA (Calcium release-activated calcium channel protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3Z6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.020e-17
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 1 
Query:   13 LQASEAHRAYVERQQDLAFRRIERFRHQIDDTRRSVDRRVEQLRTVANLAALLTGFEAVVLVETNLTDQNAPVWLIGLFAATTAFALLLFLLSKVTASLILVPVLEFNEVGSVMESDDDFPTMWRKYFSRDWRWTKKFFLYGVHFFFGSVITLGWIRFLPDFYAPGIISV 522
            L  ++ H A   R++++ +R++E  R QID+       +VEQLR++ANLAAL+ GF  VVL+E N+   + P  LIGL+A +TA  + +  LS V  +L+LV VL+  ++     +   F   W      DW     FF  GV  F  ++   GW+ F       G+I+V
Sbjct:    9 LALADVHLATKWREEEIKYRKLEILRRQIDE-------KVEQLRSIANLAALIAGFSVVVLIELNIPSNDVPAVLIGLWALSTAITVCIMSLSFVICTLMLVGVLKAFDLE---RAKMPFQQFWVLRCEEDWMRAFWFFTIGVPMFMLNLALAGWVLFFEYLPIAGLITV 168
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BLAST of mRNA_M-pyrifera_M_contig102602.566.1 vs. uniprot
Match: A0A7S0KQA7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KQA7_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 3.200e-7
Identity = 52/158 (32.91%), Postives = 73/158 (46.20%), Query Frame = 1 
Query:  100 DDTRRSVDRRVEQLRTVANLAALLTGFEAVVLVETNLTDQNAPV----WLIGLFAATTAFALLLFLLSKVTASLILVPVLEFNEVGSVMESDD-----------------DFPTMWRKYFSRDWR------WTKKF--FLYGVHFFFGSVITLGWIRF 486
            +  RR V+ + EQLR  +NLAAL++GF  V LVE   +D  +       LI  +AATTA  +++ L S V  S +L  +L  N    V E ++                 D P M R+ F R W       W K F  F YGV  F  ++    W++F
Sbjct:   95 EKNRRDVEEKGEQLRATSNLAALISGFAVVALVEFQFSDPTSTPDQSEILIVAYAATTAITVVMMLNSMVLCSFMLSNILR-NGKSYVSEDEEAEFLFACRKFALSYKPGDTPPMPRRSFERHWETRCESDWRKAFRMFTYGVPMFVANLTLSAWLKF 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102602.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8E468_CAFRO1.240e-1836.00Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A2R5G3Z6_9STRA7.020e-1734.71Calcium release-activated calcium channel protein ... [more]
A0A7S0KQA7_9CHLO3.200e-732.91Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102602contigM-pyrifera_M_contig102602:66..587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue5.4e-07
Seed eggNOG ortholog41875.XP_007510450.1
KEGG koko:K16056
KEGG TC1.A.52.1.1
KEGG Pathwayko04020,ko04024,ko04611,ko04924,ko04925,ko04927,ko04934,ko05340,map04020,map04024,map04611,map04924,map04925,map04927,map04934,map05340
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Mediator of CRAC channel activity
EggNOG OGs2AXBY@1,2S00K@2759,34HU5@3041,37UYW@33090
COG Functional cat.U
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size522
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.1623456-CDS-M-pyrifera_M_contig102602:65..5871622815530.1623456-CDS-M-pyrifera_M_contig102602:65..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102602 66..587 -
1692277451.1678224-CDS-M-pyrifera_M_contig102602:65..5871692277451.1678224-CDS-M-pyrifera_M_contig102602:65..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102602 66..587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102602.566.1prot_M-pyrifera_M_contig102602.566.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102602 66..587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102602.566.1

>prot_M-pyrifera_M_contig102602.566.1 ID=prot_M-pyrifera_M_contig102602.566.1|Name=mRNA_M-pyrifera_M_contig102602.566.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MDLFLQASEAHRAYVERQQDLAFRRIERFRHQIDDTRRSVDRRVEQLRTV
ANLAALLTGFEAVVLVETNLTDQNAPVWLIGLFAATTAFALLLFLLSKVT
ASLILVPVLEFNEVGSVMESDDDFPTMWRKYFSRDWRWTKKFFLYGVHFF
FGSVITLGWIRFLPDFYAPGIISV
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mRNA from alignment at M-pyrifera_M_contig102602:66..587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102602.566.1 ID=mRNA_M-pyrifera_M_contig102602.566.1|Name=mRNA_M-pyrifera_M_contig102602.566.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig102602:66..587- (Macrocystis pyrifera P11B4 male)
ATGGATTTATTCTTACAAGCTTCTGAAGCGCATCGAGCCTATGTAGAGCG
CCAACAGGACCTCGCATTCCGACGAATCGAGCGGTTCAGGCATCAGATCG
ACGATACACGGCGTTCTGTGGACCGTCGGGTAGAGCAACTCCGCACAGTT
GCAAACTTGGCTGCTCTTCTCACGGGTTTCGAAGCAGTGGTGCTTGTAGA
GACCAATTTGACGGACCAAAATGCTCCAGTTTGGTTGATCGGGCTTTTCG
CAGCGACTACGGCATTCGCGCTACTTCTCTTTCTCCTCAGCAAGGTAACT
GCATCTCTTATTTTGGTTCCAGTGTTGGAATTTAATGAAGTTGGGAGTGT
GATGGAGAGCGATGACGACTTCCCAACCATGTGGCGCAAGTACTTTTCTC
GTGATTGGCGGTGGACAAAGAAGTTTTTCCTCTACGGCGTTCATTTCTTC
TTTGGTTCGGTCATCACTCTGGGGTGGATCCGATTCCTCCCCGACTTTTA
TGCGCCAGGGATCATCTCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102602:66..587-

>mRNA_M-pyrifera_M_contig102602.566.1 ID=mRNA_M-pyrifera_M_contig102602.566.1|Name=mRNA_M-pyrifera_M_contig102602.566.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig102602:66..587- (Macrocystis pyrifera P11B4 male)
ATGGATTTATTCTTACAAGCTTCTGAAGCGCATCGAGCCTATGTAGAGCG
CCAACAGGACCTCGCATTCCGACGAATCGAGCGGTTCAGGCATCAGATCG
ACGATACACGGCGTTCTGTGGACCGTCGGGTAGAGCAACTCCGCACAGTT
GCAAACTTGGCTGCTCTTCTCACGGGTTTCGAAGCAGTGGTGCTTGTAGA
GACCAATTTGACGGACCAAAATGCTCCAGTTTGGTTGATCGGGCTTTTCG
CAGCGACTACGGCATTCGCGCTACTTCTCTTTCTCCTCAGCAAGGTAACT
GCATCTCTTATTTTGGTTCCAGTGTTGGAATTTAATGAAGTTGGGAGTGT
GATGGAGAGCGATGACGACTTCCCAACCATGTGGCGCAAGTACTTTTCTC
GTGATTGGCGGTGGACAAAGAAGTTTTTCCTCTACGGCGTTCATTTCTTC
TTTGGTTCGGTCATCACTCTGGGGTGGATCCGATTCCTCCCCGACTTTTA
TGCGCCAGGGATCATCTCCGTCATGGATTTATTCTTACAAGCTTCTGAAG
CGCATCGAGCCTATGTAGAGCGCCAACAGGACCTCGCATTCCGACGAATC
GAGCGGTTCAGGCATCAGATCGACGATACACGGCGTTCTGTGGACCGTCG
GGTAGAGCAACTCCGCACAGTTGCAAACTTGGCTGCTCTTCTCACGGGTT
TCGAAGCAGTGGTGCTTGTAGAGACCAATTTGACGGACCAAAATGCTCCA
GTTTGGTTGATCGGGCTTTTCGCAGCGACTACGGCATTCGCGCTACTTCT
CTTTCTCCTCAGCAAGGTAACTGCATCTCTTATTTTGGTTCCAGTGTTGG
AATTTAATGAAGTTGGGAGTGTGATGGAGAGCGATGACGACTTCCCAACC
ATGTGGCGCAAGTACTTTTCTCGTGATTGGCGGTGGACAAAGAAGTTTTT
CCTCTACGGCGTTCATTTCTTCTTTGGTTCGGTCATCACTCTGGGGTGGA
TCCGATTCCTCCCCGACTTTTATGCGCCAGGGATCATCTCCGTC
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