mRNA_M-pyrifera_M_contig128110.5648.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128110.5648.1
Unique NamemRNA_M-pyrifera_M_contig128110.5648.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A554X7N3_9BURK (Bifunctional enzyme IspD/IspF n=1 Tax=Tepidimonas thermarum TaxID=335431 RepID=A0A554X7N3_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 8.900e-7
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 RAESDGFSGV-DAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAKSFGDATWR 174
            R ++ GF+G+ D A  ++H GA P R V G  +NIKVT+P+D A+AEAL ++     WR
Sbjct:  201 RHQASGFAGITDEASAIEHAGARP-RLVRGHAQNIKVTYPEDFAVAEALLQAGAAPAWR 258          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A5Q2RLZ3_9ACTN (NTP transferase domain-containing protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RLZ3_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAKSF 156
            RA  +G  G+D AE V   G    R V GD RNIKVT PDD A AEA+A+ +
Sbjct:  185 RAAREGIEGLDTAELVAAAGGPAARVVPGDDRNIKVTTPDDVARAEAIARRW 236          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: UPI001D0C8455 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Nocardioides lijunqiniae TaxID=2760832 RepID=UPI001D0C8455)

HSP 1 Score: 50.4 bits (119), Expect = 6.930e-6
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 1
Query:    1 RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEAL 144
            +A +DGF G D A  V    AGP   V G  RN+K+T P+D ALAE L
Sbjct:  152 QAAADGFQGTDTASCVARYAAGPVAAVAGSSRNLKITFPEDVALAEEL 199          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A7V9J0M0_9ACTN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9J0M0_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 9.000e-6
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1
Query:    4 AESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAK 150
            A S GF G D A T +H G  P   V GD RNIKVT P+D A+AE+L K
Sbjct:  193 AASRGFEGTDTASTAEHFGI-PVAIVPGDPRNIKVTLPEDIAVAESLLK 240          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A5S4ZPD9_9FIRM (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Desulfallas thermosapovorans DSM 6562 TaxID=1121431 RepID=A0A5S4ZPD9_9FIRM)

HSP 1 Score: 48.5 bits (114), Expect = 4.120e-5
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1
Query:    4 AESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEAL 144
            A  DGFSG D A  V+  G  P + V GD  NIK+T P+D ALAEAL
Sbjct:  178 AARDGFSGTDDASLVERLGH-PVKLVPGDYANIKITTPEDIALAEAL 223          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: UPI0010702005 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Nocardioides sp. 503 TaxID=2508326 RepID=UPI0010702005)

HSP 1 Score: 48.5 bits (114), Expect = 4.160e-5
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    1 RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAKS 153
            +A ++GF G D A  V   GA P   V G  RN+K+T P+D ALAE L ++
Sbjct:  175 QAAAEGFQGTDTASCVARYGAWPVAAVAGSARNLKITFPEDVALAEELTQA 225          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A7C3U3Z0_9DELT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3U3Z0_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 4.260e-5
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1
Query:    1 RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEAL 144
            +AE DGF G D A  V+  G  P   ++GD  NIK+T P+D ALAE L
Sbjct:  177 KAEEDGFQGTDDAALVERLGH-PVTLIQGDYTNIKITTPEDLALAETL 223          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A7K2AIZ5_9ACTN (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AIZ5_9ACTN)

HSP 1 Score: 48.5 bits (114), Expect = 4.710e-5
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:    1 RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAK 150
            RA+  GF GVD AETV+       R   GD  N+K+T P+D ALAE +A+
Sbjct:  207 RAQVAGFEGVDTAETVERFSDLKVRATPGDPNNLKLTFPEDFALAETIAR 256          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: UPI001BC522D2 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Dethiobacter sp. TaxID=2093370 RepID=UPI001BC522D2)

HSP 1 Score: 48.1 bits (113), Expect = 6.020e-5
Identity = 26/54 (48.15%), Postives = 31/54 (57.41%), Query Frame = 1
Query:    4 AESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAKSFGDA 165
            A ++G    D A  V+ CG  P R V GD  NIKVT P+D ALAE +    GDA
Sbjct:  179 ARAEGLVATDDAALVERCGY-PVRLVTGDYENIKVTTPEDLALAEIILGRRGDA 231          
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Match: A0A841H5D3_9BACT (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841H5D3_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 8.140e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    1 RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALA 147
            RA +DGF+  D A   +   AGP R V G  RN+KVT P+D A+AEA+A
Sbjct:  178 RAAADGFAATDDAALFERY-AGPVRVVMGSPRNLKVTRPEDVAVAEAIA 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128110.5648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A554X7N3_9BURK8.900e-745.76Bifunctional enzyme IspD/IspF n=1 Tax=Tepidimonas ... [more]
A0A5Q2RLZ3_9ACTN1.300e-651.92NTP transferase domain-containing protein n=1 Tax=... [more]
UPI001D0C84556.930e-650.002-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7V9J0M0_9ACTN9.000e-655.102-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A5S4ZPD9_9FIRM4.120e-555.322-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
UPI00107020054.160e-545.102-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7C3U3Z0_9DELT4.260e-550.002-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7K2AIZ5_9ACTN4.710e-548.002-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
UPI001BC522D26.020e-548.152-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A841H5D3_9BACT8.140e-551.022-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128110contigM-pyrifera_M_contig128110:321..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815794.3964171-CDS-M-pyrifera_M_contig128110:320..4971622815794.3964171-CDS-M-pyrifera_M_contig128110:320..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128110 321..497 -
1692277572.740988-CDS-M-pyrifera_M_contig128110:320..4971692277572.740988-CDS-M-pyrifera_M_contig128110:320..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128110 321..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128110.5648.1prot_M-pyrifera_M_contig128110.5648.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128110 321..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128110.5648.1

>prot_M-pyrifera_M_contig128110.5648.1 ID=prot_M-pyrifera_M_contig128110.5648.1|Name=mRNA_M-pyrifera_M_contig128110.5648.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
RAESDGFSGVDAAETVQHCGAGPTRWVEGDQRNIKVTHPDDRALAEALAK
SFGDATWR*
back to top

mRNA from alignment at M-pyrifera_M_contig128110:321..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128110.5648.1 ID=mRNA_M-pyrifera_M_contig128110.5648.1|Name=mRNA_M-pyrifera_M_contig128110.5648.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig128110:321..497- (Macrocystis pyrifera P11B4 male)
CGGGCCGAGTCAGATGGCTTCTCCGGCGTCGACGCCGCCGAGACGGTCCA GCACTGCGGCGCAGGACCGACTCGTTGGGTCGAAGGTGATCAGCGGAACA TCAAGGTGACACACCCCGACGATCGGGCCCTTGCCGAGGCATTGGCGAAA TCGTTCGGTGACGCCACCTGGCGATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig128110:321..497-

>mRNA_M-pyrifera_M_contig128110.5648.1 ID=mRNA_M-pyrifera_M_contig128110.5648.1|Name=mRNA_M-pyrifera_M_contig128110.5648.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig128110:321..497- (Macrocystis pyrifera P11B4 male)
CGGGCCGAGTCAGATGGCTTCTCCGGCGTCGACGCCGCCGAGACGGTCCA
GCACTGCGGCGCAGGACCGACTCGTTGGGTCGAAGGTGATCAGCGGAACA
TCAAGGTGACACACCCCGACGATCGGGCCCTTGCCGAGGCATTGGCGAAA
TCGTTCGGTGACGCCACCTGGCGATGACGGGCCGAGTCAGATGGCTTCTC
CGGCGTCGACGCCGCCGAGACGGTCCAGCACTGCGGCGCAGGACCGACTC
GTTGGGTCGAAGGTGATCAGCGGAACATCAAGGTGACACACCCCGACGAT
CGGGCCCTTGCCGAGGCATTGGCGAAATCGTTCGGTGACGCCACCTGGCG
ATGA
back to top