mRNA_M-pyrifera_M_contig102595.564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102595.564.1
Unique NamemRNA_M-pyrifera_M_contig102595.564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102595.564.1 vs. uniprot
Match: A0A517PGZ8_9PLAN (Uncharacterized protein n=4 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PGZ8_9PLAN)

HSP 1 Score: 210 bits (535), Expect = 1.350e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:   61 MDVAANPSAIDTAADILKQIEQTHGIEILHEFCTDSILPAGAFRPTSQPLSYNNILELLRDWDAFQQQYESTDDADLDSSLHPFLSETQLIIQGMDFTNDHFI 369
            MDVAANPSAIDTAADILKQIEQTHGIEILHEFCTDSILPAGAFRPTSQPLSYNNILELLRDWDAFQQQYESTDDADLDSSLHPFLSETQLIIQGMDFTNDHFI
Sbjct:    1 MDVAANPSAIDTAADILKQIEQTHGIEILHEFCTDSILPAGAFRPTSQPLSYNNILELLRDWDAFQQQYESTDDADLDSSLHPFLSETQLIIQGMDFTNDHFI 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102595.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517PGZ8_9PLAN1.350e-67100.00Uncharacterized protein n=4 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102595contigM-pyrifera_M_contig102595:3..371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.798525-CDS-M-pyrifera_M_contig102595:2..3711622815529.798525-CDS-M-pyrifera_M_contig102595:2..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102595 3..371 -
1692277450.9504697-CDS-M-pyrifera_M_contig102595:2..3711692277450.9504697-CDS-M-pyrifera_M_contig102595:2..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102595 3..371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102595.564.1prot_M-pyrifera_M_contig102595.564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102595 3..371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102595.564.1

>prot_M-pyrifera_M_contig102595.564.1 ID=prot_M-pyrifera_M_contig102595.564.1|Name=mRNA_M-pyrifera_M_contig102595.564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MVTTGLPLTLDHTLPFVEAVMDVAANPSAIDTAADILKQIEQTHGIEILH
EFCTDSILPAGAFRPTSQPLSYNNILELLRDWDAFQQQYESTDDADLDSS
LHPFLSETQLIIQGMDFTNDHFI
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mRNA from alignment at M-pyrifera_M_contig102595:3..371-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102595.564.1 ID=mRNA_M-pyrifera_M_contig102595.564.1|Name=mRNA_M-pyrifera_M_contig102595.564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig102595:3..371- (Macrocystis pyrifera P11B4 male)
ATGGTGACGACCGGATTACCTTTAACACTCGACCACACATTGCCTTTCGT
CGAGGCTGTAATGGACGTGGCGGCAAATCCGTCCGCCATCGATACCGCAG
CCGATATTCTCAAACAAATCGAGCAAACACACGGCATCGAAATTCTTCAC
GAATTTTGCACCGATTCCATTTTGCCGGCTGGTGCGTTTCGCCCAACATC
ACAGCCGTTATCGTACAACAACATTCTCGAACTGCTTCGTGATTGGGATG
CGTTTCAACAACAATACGAATCCACAGATGACGCTGATCTCGATTCATCA
TTGCATCCCTTCCTCTCTGAAACACAACTCATCATTCAGGGGATGGATTT
CACCAACGACCATTTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102595:3..371-

>mRNA_M-pyrifera_M_contig102595.564.1 ID=mRNA_M-pyrifera_M_contig102595.564.1|Name=mRNA_M-pyrifera_M_contig102595.564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig102595:3..371- (Macrocystis pyrifera P11B4 male)
ATGGTGACGACCGGATTACCTTTAACACTCGACCACACATTGCCTTTCGT
CGAGGCTGTAATGGACGTGGCGGCAAATCCGTCCGCCATCGATACCGCAG
CCGATATTCTCAAACAAATCGAGCAAACACACGGCATCGAAATTCTTCAC
GAATTTTGCACCGATTCCATTTTGCCGGCTGGTGCGTTTCGCCCAACATC
ACAGCCGTTATCGTACAACAACATTCTCGAACTGCTTCGTGATTGGGATG
CGTTTCAACAACAATACGAATCCACAGATGACGCTGATCTCGATTCATCA
TTGCATCCCTTCCTCTCTGAAACACAACTCATCATTCAGGGGATGGATTT
CACCAACGACCATTTCATCATGGTGACGACCGGATTACCTTTAACACTCG
ACCACACATTGCCTTTCGTCGAGGCTGTAATGGACGTGGCGGCAAATCCG
TCCGCCATCGATACCGCAGCCGATATTCTCAAACAAATCGAGCAAACACA
CGGCATCGAAATTCTTCACGAATTTTGCACCGATTCCATTTTGCCGGCTG
GTGCGTTTCGCCCAACATCACAGCCGTTATCGTACAACAACATTCTCGAA
CTGCTTCGTGATTGGGATGCGTTTCAACAACAATACGAATCCACAGATGA
CGCTGATCTCGATTCATCATTGCATCCCTTCCTCTCTGAAACACAACTCA
TCATTCAGGGGATGGATTTCACCAACGACCATTTCATC
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