prot_M-pyrifera_M_contig127992.5633.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig127992.5633.1
Unique Nameprot_M-pyrifera_M_contig127992.5633.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length84
Homology
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A6P8FVE7_CLUHA (DNA repair protein RAD51 homolog 3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8FVE7_CLUHA)

HSP 1 Score: 65.1 bits (157), Expect = 1.680e-10
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 84
            +L    +VRC D   L+A C  L D LTK+P ++LV++DS+AFPFRH     ++   L+  ++++L + A +H VA+V  NQ+TT
Sbjct:  149 ILSRLWLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEHSVAVVLTNQMTT 233          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A5N5LKG9_PANHP (RECA_2 domain-containing protein n=5 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5LKG9_PANHP)

HSP 1 Score: 65.1 bits (157), Expect = 1.860e-10
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 84
            +L    +VRC D   L+A    L D L K P +RLV++DSVAFPFRH L   + R   L   S++L   + +HG A+V  NQ+TT
Sbjct:  188 ILSGVFLVRCQDHTELLAELHLLHDFLRKRPQVRLVVIDSVAFPFRHELEDLSHRTRILTGFSQQLTHLSAQHGAAVVLTNQMTT 272          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A8M1KDU3_CLUHA (LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 3-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KDU3_CLUHA)

HSP 1 Score: 65.1 bits (157), Expect = 1.880e-10
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 84
            +L    +VRC D   L+A C  L D LTK+P ++LV++DS+AFPFRH     ++   L+  ++++L + A +H VA+V  NQ+TT
Sbjct:  187 ILSRLWLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEHSVAVVLTNQMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI001BFB52DF (DNA repair protein RAD51 homolog 3 isoform X1 n=2 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001BFB52DF)

HSP 1 Score: 63.9 bits (154), Expect = 4.880e-10
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 84
            +L    +VRC D   L+A C  L D LTK+P ++LV++DS+AFPFRH     ++   L+  ++++L + A ++ VA+V  NQ+TT
Sbjct:  193 ILSRLSLVRCHDYVELLAHCYLLPDFLTKHPEVQLVVIDSIAFPFRHDFEDFSQRTRLLNGLAQQLIQLATEYNVAVVLTNQMTT 277          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A8J4T8E0_CLAMG (DNA repair protein RAD51 3 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4T8E0_CLAMG)

HSP 1 Score: 61.2 bits (147), Expect = 4.060e-9
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 84
            +L    +VRC D   L+A    L D L K P +RLV++DSVAFPFRH L   + R   L  ++  L R + +H  A+V  NQ+TT
Sbjct:  188 ILSGVFLVRCQDHVALLAELHLLHDFLRKRPQVRLVVIDSVAFPFRHCLEDLSHRTRLLTGLALRLARISAQHTAAVVLTNQMTT 272          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: UPI001FEDF698 (DNA repair protein RAD51 homolog 3 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEDF698)

HSP 1 Score: 60.8 bits (146), Expect = 6.000e-9
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLVA-VSRELKRNAM-KHGVAIVAINQVTT 84
            +L    +VRC D   L+A    L D L K P +RLV++DSVAFPFRH L   ++   L++  S+++ R A  +HG A+V  NQ+TT
Sbjct:  188 ILSGVFLVRCHDHVALLAELHLLPDFLRKRPQVRLVVIDSVAFPFRHELEDVSQRTRLLSGFSQQVTRLASAQHGPAVVLTNQMTT 273          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A5A9N1Y8_9TELE (DNA repair protein RAD51-like protein 3 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9N1Y8_9TELE)

HSP 1 Score: 60.5 bits (145), Expect = 8.220e-9
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    1 MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSL-NPRARAAGLVAVSRELKRNAMKHGVAIVAINQVTT 84
            +L +  +VRC D   L+A    L D L ++P +RLVI+DS+AFPFRH   N   R   L  ++++L R A +H VA+V  N +TT
Sbjct:  187 VLSSFFLVRCHDYVELLAEVYLLPDFLAEHPEVRLVIIDSIAFPFRHDFENLSQRTRLLNGLAQQLIRIATQHSVAVVLSNHMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A6J2WUW8_CHACN (DNA repair protein RAD51 homolog 3 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WUW8_CHACN)

HSP 1 Score: 60.1 bits (144), Expect = 1.130e-8
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    8 VRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 84
            +RC D   L+A    L + L ++P++RLV++DS+AFPFRH     ++   L+  ++++L + A KH VA+V  NQ+TT
Sbjct:  194 IRCHDYVELLAEIYLLPEFLAQHPDVRLVVIDSIAFPFRHDFEDLSQRTRLLNGLAQQLIQMATKHSVAVVLTNQMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: F1QQC9_DANRE (RAD51 paralog C n=23 Tax=Cyprinoidei TaxID=30727 RepID=F1QQC9_DANRE)

HSP 1 Score: 59.3 bits (142), Expect = 2.110e-8
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0
Query:    8 VRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRARAAGLV-AVSRELKRNAMKHGVAIVAINQVTT 84
            VRC D   L+A    L D L+++P +RLV++DS+AFPFRH     ++   L+  ++++L + A +H VA+V  NQ+TT
Sbjct:  194 VRCHDYVELLAEVYLLPDFLSEHPEVRLVVIDSIAFPFRHDFEDLSQRTRLLNGLAQQLIQLATQHRVAVVLTNQMTT 271          
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Match: A0A401P6L4_SCYTO (RECA_2 domain-containing protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401P6L4_SCYTO)

HSP 1 Score: 58.9 bits (141), Expect = 2.390e-8
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0
Query:    9 RCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLNPRA-RAAGLVAVSRELKRNAMKHGVAIVAINQVTT 84
            RC D   L+A    L D L ++P +R+V++DS+AFPFRH+L   + R   L  ++++L   A  HGVA+V  NQ+TT
Sbjct:  176 RCHDYVELLAQSHLLADFLAEHPKVRIVVIDSIAFPFRHNLEDLSLRTRLLNGLAQQLIGMANDHGVAVVLTNQMTT 252          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127992.5633.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P8FVE7_CLUHA1.680e-1041.18DNA repair protein RAD51 homolog 3 n=1 Tax=Clupea ... [more]
A0A5N5LKG9_PANHP1.860e-1043.53RECA_2 domain-containing protein n=5 Tax=Siluroide... [more]
A0A8M1KDU3_CLUHA1.880e-1041.18LOW QUALITY PROTEIN: DNA repair protein RAD51 homo... [more]
UPI001BFB52DF4.880e-1040.00DNA repair protein RAD51 homolog 3 isoform X1 n=2 ... [more]
A0A8J4T8E0_CLAMG4.060e-942.35DNA repair protein RAD51 3 n=1 Tax=Clarias magur T... [more]
UPI001FEDF6986.000e-943.02DNA repair protein RAD51 homolog 3 n=1 Tax=Tachysu... [more]
A0A5A9N1Y8_9TELE8.220e-942.35DNA repair protein RAD51-like protein 3 n=1 Tax=Tr... [more]
A0A6J2WUW8_CHACN1.130e-839.74DNA repair protein RAD51 homolog 3 n=1 Tax=Chanos ... [more]
F1QQC9_DANRE2.110e-841.03RAD51 paralog C n=23 Tax=Cyprinoidei TaxID=30727 R... [more]
A0A401P6L4_SCYTO2.390e-842.86RECA_2 domain-containing protein n=1 Tax=Scyliorhi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 29..83
e-value: 7.4E-5
score: 22.1
NoneNo IPR availableGENE3D3.40.50.300coord: 1..84
e-value: 2.8E-16
score: 61.9
NoneNo IPR availablePANTHERPTHR46239FAMILY NOT NAMEDcoord: 2..84
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 1..82
score: 17.92
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127992contigM-pyrifera_M_contig127992:102..353 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127992.5633.1mRNA_M-pyrifera_M_contig127992.5633.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig127992 84..353 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig127992.5633.1 ID=prot_M-pyrifera_M_contig127992.5633.1|Name=mRNA_M-pyrifera_M_contig127992.5633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MLEATKVVRCADAGTLVAVCAGLDDILTKNPNIRLVIVDSVAFPFRHSLN
PRARAAGLVAVSRELKRNAMKHGVAIVAINQVTT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase