mRNA_M-pyrifera_M_contig127959.5629.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A2D6UQ00_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=A0A2D6UQ00_9SPHN) HSP 1 Score: 67.8 bits (164), Expect = 4.230e-12 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 4 SSDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKR 198
SSDPPGVGP LL + V ++ S+SSIY + FPE+ K+G S W + E++ WIEE + KR
Sbjct: 161 SSDPPGVGPMLLSIDEVSELIGRSQSSIYEDEKKGVFPERLKLGSSSRWRKDEVLAWIEEQSAKR 225
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: UPI00145CBF59 (AlpA family transcriptional regulator n=1 Tax=Candidatus Accumulibacter phosphatis TaxID=327160 RepID=UPI00145CBF59) HSP 1 Score: 61.2 bits (147), Expect = 7.960e-11 Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEE 183
+L++LP VK+MV L RSSIY+KI + FP+Q K+G S W+E+E+ WI E
Sbjct: 4 RLIRLPQVKSMVGLGRSSIYAKIKRGEFPKQIKLGRSSGWVEAEVQTWISE 54
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A844YIJ6_9SPHN (Helix-turn-helix domain-containing protein n=1 Tax=Qipengyuania oceanensis TaxID=1463597 RepID=A0A844YIJ6_9SPHN) HSP 1 Score: 64.7 bits (156), Expect = 8.750e-11 Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 4 SSDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKR 198
+ DPPGVGP LL + V ++ S S+IY+ + + FPE K+G + W ++E++ WIEE A KR
Sbjct: 195 AGDPPGVGPLLLTVSEVSELIGRSTSTIYADVKKGAFPEGIKLGSSTRWKKTEVLAWIEEQAGKR 259
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A8E1WVL4_9PROT (AlpA family transcriptional regulator n=2 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A8E1WVL4_9PROT) HSP 1 Score: 60.8 bits (146), Expect = 1.410e-10 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEE 183
+L++LP VK MV L RSSIY KI + FP+Q K+G S W+E+E+ +WI E
Sbjct: 4 RLIRLPQVKAMVGLGRSSIYDKIKRGEFPKQIKLGRSSGWVEAEVQEWISE 54
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A1G3JXG2_9SPHN (HTH_17 domain-containing protein n=1 Tax=Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 TaxID=1802169 RepID=A0A1G3JXG2_9SPHN) HSP 1 Score: 57.4 bits (137), Expect = 2.010e-9 Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 19 GVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKR 198
G+GP+LL L V ++V +SS+YS I FPE K+G S W + E++ WIEE A +R
Sbjct: 5 GLGPELLTLADVCDLVRKGKSSVYSMISGGQFPEPIKLGSNSRWAKREVLTWIEEQAARR 64
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A5J6LC54_9GAMM (AlpA family phage regulatory protein n=1 Tax=Nitrincola iocasae TaxID=2614693 RepID=A0A5J6LC54_9GAMM) HSP 1 Score: 57.0 bits (136), Expect = 2.540e-9 Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSF-WLESEIVQWIEENANKRQ 201
KLL+LP V N LSRSS+Y K+D +FP +I S W E E+ +WIEE N+R+
Sbjct: 2 KLLRLPDVLNATGLSRSSLYRKLDDGSFPTSIRISQRSVAWCEEEVQRWIEERINERE 59
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A011Q1G7_9PROT (Putative transcriptional regulator n=1 Tax=Candidatus Accumulibacter sp. BA-92 TaxID=1454003 RepID=A0A011Q1G7_9PROT) HSP 1 Score: 57.0 bits (136), Expect = 3.220e-9 Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEENANKRQ 201
+L++LP VK MV L RSSIY KI + FP+Q K+G S WLE+EI I E R+
Sbjct: 4 RLVRLPQVKAMVGLGRSSIYEKIKRGEFPKQIKLGRSSGWLEAEIQAGISEQFQARR 60
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A1A9MDJ7_9XANT (Uncharacterized protein n=3 Tax=Xanthomonas TaxID=338 RepID=A0A1A9MDJ7_9XANT) HSP 1 Score: 56.6 bits (135), Expect = 4.060e-9 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 7 SDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWLESEIVQWIEE 183
S P +LL+LP V + V +S+S++YS+I KTFP+ +G S W+ESE+ WI +
Sbjct: 2 STTPTTTQRLLRLPDVLDRVGISKSTLYSRIRDKTFPQPLHLGTSSVWVESEVTDWIND 60
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: A0A443YYT6_9GAMM (AlpA family transcriptional regulator n=1 Tax=Pseudidiomarina gelatinasegens TaxID=2487740 RepID=A0A443YYT6_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 7.610e-9 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQ-TKIGGGSFWLESEIVQWIEENANKR 198
+L++LP VK+M L RSS+Y + + FP+ T IG S W+E+E+V+WIE+ +R
Sbjct: 2 RLIRLPQVKDMTGLGRSSVYKLMSEGKFPKAVTLIGRASAWVENEVVEWIEDRITER 58
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Match: UPI00048B5A50 (AlpA family transcriptional regulator n=1 Tax=Shewanella colwelliana TaxID=23 RepID=UPI00048B5A50) HSP 1 Score: 55.5 bits (132), Expect = 1.080e-8 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 31 KLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSF-WLESEIVQWIEE 183
K+L+LPAVK V LSRSSIY +I Q FP +G + WLES+I QW++E
Sbjct: 4 KVLRLPAVKGKVGLSRSSIYLRIAQGKFPASISLGDRAVGWLESDIEQWLDE 55 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127959.5629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127959.5629.1 >prot_M-pyrifera_M_contig127959.5629.1 ID=prot_M-pyrifera_M_contig127959.5629.1|Name=mRNA_M-pyrifera_M_contig127959.5629.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp ISSDPPGVGPKLLKLPAVKNMVSLSRSSIYSKIDQKTFPEQTKIGGGSFWback to top mRNA from alignment at M-pyrifera_M_contig127959:242..448- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127959.5629.1 ID=mRNA_M-pyrifera_M_contig127959.5629.1|Name=mRNA_M-pyrifera_M_contig127959.5629.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig127959:242..448- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127959:242..448- >mRNA_M-pyrifera_M_contig127959.5629.1 ID=mRNA_M-pyrifera_M_contig127959.5629.1|Name=mRNA_M-pyrifera_M_contig127959.5629.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig127959:242..448- (Macrocystis pyrifera P11B4 male)back to top |