mRNA_M-pyrifera_M_contig127893.5616.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127893.5616.1
Unique NamemRNA_M-pyrifera_M_contig127893.5616.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A0L0T124_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T124_ALLM3)

HSP 1 Score: 62.8 bits (151), Expect = 6.980e-11
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 VEDVPSMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            V+D+P +  + K    +L +L  +G+   L+GFE VKAI L    ++   G LTP+FKLKR  A +H++ I D +YA L
Sbjct:   14 VDDIPKLCKDPKVVDAVLHELTVIGKEKKLRGFEFVKAIHLEPNVWTVESGFLTPSFKLKRQPAAEHYRAIIDGMYAKL 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A1E7FEY1_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEY1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.050e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   28 NDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYA 228
            +DK +++I+ DL  +GR  GL GFE+ K+I LS +EFS   GLLTPTFKLKR  AR  +++  + +Y 
Sbjct:  605 SDKLKSIIMADLTKLGRANGLLGFEIPKSIHLSDEEFSVENGLLTPTFKLKRQQARDKYEKEIERMYT 672
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A1Y2CNM5_9FUNG (Acetyl-CoA synthetase-like protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CNM5_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 1.800e-10
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   16 SMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            ++  N+K + +I +D+  +G+  GLKGFE  KAI L  + FS   GL+TPTFKLKRN A   F+   D +Y  L
Sbjct:  605 TICSNNKMKELIFQDMNKIGKQFGLKGFEFAKAIHLDAEGFSAENGLITPTFKLKRNEAADKFRPQIDAMYKVL 678
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A835Z6V1_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.800e-10
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   49 ILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGLE 237
            I++ +    RG  L GFE+ KAI ++ + FS   GLLTPTFKLKR +A++HF    D +YAGLE
Sbjct:  659 IMDQIKAAARGAKLHGFEICKAIHVAAEAFSEDNGLLTPTFKLKRPIAKKHFADQIDAMYAGLE 722
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A1Y2CN55_9FUNG (Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CN55_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 3.360e-10
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   28 NDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            + K R ++L+DL  +G+  GLKGFE  KA+ L  + FS   GLLTPTFKLKRN A   F+   D +Y  L
Sbjct:  630 SQKIRDLVLKDLNKIGKQHGLKGFEFAKAVHLDAEGFSIENGLLTPTFKLKRNEAGLKFRPQIDVMYKAL 699
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: UPI0010A2D9CE (long chain acyl-CoA synthetase 6, peroxisomal-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2D9CE)

HSP 1 Score: 63.2 bits (152), Expect = 8.570e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    4 EDVPSMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            +D+  +  + + R  +L ++  VGR   L+GFE VKAI L+ + F+   GLLTPTFK+KR  A++HF +    +Y+ L
Sbjct:  607 DDLAQLCNDPRARAAVLAEMDAVGREAQLRGFEFVKAITLTVEPFTMENGLLTPTFKIKRPQAKEHFSEAISNMYSEL 684
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A1X2HAF4_SYNRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HAF4_SYNRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.170e-9
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    4 EDVPSMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTVG-LLTPTFKLKRNVARQHFQQICDELYAGL 234
            +D  + L +D+ +  +L+ L   G+   LKGFE ++A+ L+ +EF+    LLTPTFKLKR +AR+ +    D+LYA L
Sbjct:  580 QDKQAALASDEVKKALLKQLNAYGKENDLKGFEQIRALHLTSEEFTVENDLLTPTFKLKREIARKVYSDEIDQLYAVL 657
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A1D6IQW6_MAIZE (Long chain acyl-CoA synthetase 6 peroxisomal n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6IQW6_MAIZE)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-9
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    4 EDVPSMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            ED+  +  + + R  +L D+ +VG+   L+GFE  KA+RL  + F+   GLLTPTFK+KR  A+ +F +   ++YA L
Sbjct:  260 EDLRQLCADPRARAAVLADMDSVGKEAQLRGFEFAKAVRLVAEPFTVDNGLLTPTFKVKRQQAKTYFAKEISDMYAEL 337
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A804REB4_MAIZE (Long-chain-fatty-acid--CoA ligase n=2 Tax=Zea mays TaxID=4577 RepID=A0A804REB4_MAIZE)

HSP 1 Score: 62.4 bits (150), Expect = 1.580e-9
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    4 EDVPSMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            ED+  +  + + R  +L D+ +VG+   L+GFE  KA+RL  + F+   GLLTPTFK+KR  A+ +F +   ++YA L
Sbjct:  439 EDLRQLCADPRARAAVLADMDSVGKEAQLRGFEFAKAVRLVAEPFTVDNGLLTPTFKVKRQQAKTYFAKEISDMYAEL 516
[Close]
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Match: A0A1D6IQW2_MAIZE (Long-chain-fatty-acid--CoA ligase n=8 Tax=Andropogoneae TaxID=147429 RepID=A0A1D6IQW2_MAIZE)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-9
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    4 EDVPSMLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTV-GLLTPTFKLKRNVARQHFQQICDELYAGL 234
            ED+  +  + + R  +L D+ +VG+   L+GFE  KA+RL  + F+   GLLTPTFK+KR  A+ +F +   ++YA L
Sbjct:  604 EDLRQLCADPRARAAVLADMDSVGKEAQLRGFEFAKAVRLVAEPFTVDNGLLTPTFKVKRQQAKTYFAKEISDMYAEL 681
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127893.5616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0T124_ALLM36.980e-1140.51Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A1E7FEY1_9STRA7.050e-1148.53Long-chain-fatty-acid--CoA ligase n=1 Tax=Fragilar... [more]
A0A1Y2CNM5_9FUNG1.800e-1044.59Acetyl-CoA synthetase-like protein n=1 Tax=Rhizocl... [more]
A0A835Z6V1_9STRA1.800e-1050.00Long-chain-fatty-acid--CoA ligase n=1 Tax=Tribonem... [more]
A0A1Y2CN55_9FUNG3.360e-1048.57Long-chain-fatty-acid--CoA ligase n=1 Tax=Rhizoclo... [more]
UPI0010A2D9CE8.570e-1039.74long chain acyl-CoA synthetase 6, peroxisomal-like... [more]
A0A1X2HAF4_SYNRA1.170e-941.03Long-chain-fatty-acid--CoA ligase n=1 Tax=Syncepha... [more]
A0A1D6IQW6_MAIZE1.420e-939.74Long chain acyl-CoA synthetase 6 peroxisomal n=2 T... [more]
A0A804REB4_MAIZE1.580e-939.74Long-chain-fatty-acid--CoA ligase n=2 Tax=Zea mays... [more]
A0A1D6IQW2_MAIZE1.600e-939.74Long-chain-fatty-acid--CoA ligase n=8 Tax=Andropog... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127893contigM-pyrifera_M_contig127893:167..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog8081.XP_008417987.1
Preferred nameACSL1
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001676,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0003987,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0007154,GO:0007165,GO:0007166,GO:0007584,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009719,GO:0009725,GO:0009755,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010562,GO:0010604,GO:0010876,GO:0012505,GO:0014070,GO:0015645,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0018130,GO:0019216,GO:0019220,GO:0019221,GO:0019222,GO:0019432,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019867,GO:0023052,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031667,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032268,GO:0032270,GO:0032787,GO:0032870,GO:0033036,GO:0033211,GO:0033559,GO:0033674,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034097,GO:0034201,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0036109,GO:0042175,GO:0042178,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042579,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0043651,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044539,GO:0045017,GO:0045859,GO:0045860,GO:0045937,GO:0046390,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046942,GO:0046949,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0055086,GO:0060255,GO:0065007,GO:0065009,GO:0070542,GO:0070887,GO:0071310,GO:0071345,GO:0071466,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0098588,GO:0098805,GO:0098827,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901700
EggNOG free text desc.acyl-CoA synthetase long-chain family member
EggNOG OGs38BK9@33154,3BA3F@33208,3CSI6@33213,482N2@7711,48XXS@7742,49UC4@7898,COG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Exons1
Model size240
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.8392277-CDS-M-pyrifera_M_contig127893:166..3881622815792.8392277-CDS-M-pyrifera_M_contig127893:166..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127893 167..388 -
1692277571.9864526-CDS-M-pyrifera_M_contig127893:166..3881692277571.9864526-CDS-M-pyrifera_M_contig127893:166..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127893 167..388 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.8546948-UTR-M-pyrifera_M_contig127893:388..4061622815792.8546948-UTR-M-pyrifera_M_contig127893:388..406Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127893 389..406 -
1692277572.0020893-UTR-M-pyrifera_M_contig127893:388..4061692277572.0020893-UTR-M-pyrifera_M_contig127893:388..406Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127893 389..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127893.5616.1prot_M-pyrifera_M_contig127893.5616.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127893 167..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127893.5616.1

>prot_M-pyrifera_M_contig127893.5616.1 ID=prot_M-pyrifera_M_contig127893.5616.1|Name=mRNA_M-pyrifera_M_contig127893.5616.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MLGNDKFRTMILEDLATVGRGCGLKGFELVKAIRLSGQEFSTVGLLTPTF
KLKRNVARQHFQQICDELYAGLE*
back to top

mRNA from alignment at M-pyrifera_M_contig127893:167..406-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127893.5616.1 ID=mRNA_M-pyrifera_M_contig127893.5616.1|Name=mRNA_M-pyrifera_M_contig127893.5616.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig127893:167..406- (Macrocystis pyrifera P11B4 male)
GTCGAGGATGTGCCTTCGATGCTCGGCAACGACAAGTTCCGCACCATGAT
CCTCGAGGACTTGGCTACCGTTGGACGCGGCTGCGGCCTCAAGGGCTTCG
AGTTGGTTAAGGCCATCCGCCTGAGCGGCCAGGAGTTCAGCACCGTTGGC
CTCCTTACCCCGACGTTCAAGTTGAAGCGCAACGTTGCCAGGCAGCACTT
CCAGCAGATCTGCGACGAGCTCTACGCCGGCCTCGAATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127893:167..406-

>mRNA_M-pyrifera_M_contig127893.5616.1 ID=mRNA_M-pyrifera_M_contig127893.5616.1|Name=mRNA_M-pyrifera_M_contig127893.5616.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig127893:167..406- (Macrocystis pyrifera P11B4 male)
ATGCTCGGCAACGACAAGTTCCGCACCATGATCCTCGAGGACTTGGCTAC
CGTTGGACGCGGCTGCGGCCTCAAGGGCTTCGAGTTGGTTAAGGCCATCC
GCCTGAGCGGCCAGGAGTTCAGCACCGTTGGCCTCCTTACCCCGACGTTC
AAGTTGAAGCGCAACGTTGCCAGGCAGCACTTCCAGCAGATCTGCGACGA
GCTCTACGCCGGCCTCGAATGAATGCTCGGCAACGACAAGTTCCGCACCA
TGATCCTCGAGGACTTGGCTACCGTTGGACGCGGCTGCGGCCTCAAGGGC
TTCGAGTTGGTTAAGGCCATCCGCCTGAGCGGCCAGGAGTTCAGCACCGT
TGGCCTCCTTACCCCGACGTTCAAGTTGAAGCGCAACGTTGCCAGGCAGC
ACTTCCAGCAGATCTGCGACGAGCTCTACGCCGGCCTCGAATGA
back to top