mRNA_M-pyrifera_M_contig127858.5614.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127858.5614.1
Unique NamemRNA_M-pyrifera_M_contig127858.5614.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127858.5614.1 vs. uniprot
Match: D8LKT1_ECTSI (Dual specificity protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.320e-10
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MKRQAREGSEKLTCPNKSCGTRLGSLKWTGAQCSC 105
            MK+QA E   KL+CPNK+CG RLGSLKWTGAQCSC
Sbjct:   97 MKQQAGEMEGKLSCPNKACGARLGSLKWTGAQCSC 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127858.5614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKT1_ECTSI1.320e-1077.14Dual specificity protein phosphatase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127858contigM-pyrifera_M_contig127858:300..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog2880.D8LKT1
KEGG koko:K09054,ko:K14165,ko:K14819
KEGG Pathwayko04141,ko05010,map04141,map05010
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03000,ko03009
Exons1
Model size111
Cds size111
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.7514346-CDS-M-pyrifera_M_contig127858:299..4101622815792.7514346-CDS-M-pyrifera_M_contig127858:299..410Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127858 300..410 -
1692277571.9389896-CDS-M-pyrifera_M_contig127858:299..4101692277571.9389896-CDS-M-pyrifera_M_contig127858:299..410Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127858 300..410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127858.5614.1prot_M-pyrifera_M_contig127858.5614.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127858 300..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127858.5614.1

>prot_M-pyrifera_M_contig127858.5614.1 ID=prot_M-pyrifera_M_contig127858.5614.1|Name=mRNA_M-pyrifera_M_contig127858.5614.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
MKRQAREGSEKLTCPNKSCGTRLGSLKWTGAQCSCK*
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mRNA from alignment at M-pyrifera_M_contig127858:300..410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127858.5614.1 ID=mRNA_M-pyrifera_M_contig127858.5614.1|Name=mRNA_M-pyrifera_M_contig127858.5614.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig127858:300..410- (Macrocystis pyrifera P11B4 male)
ATGAAGCGGCAGGCGAGGGAGGGCAGCGAAAAGCTGACGTGCCCGAACAA
AAGTTGCGGAACGCGGCTGGGCTCTCTCAAGTGGACAGGCGCGCAGTGCT
CATGTAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127858:300..410-

>mRNA_M-pyrifera_M_contig127858.5614.1 ID=mRNA_M-pyrifera_M_contig127858.5614.1|Name=mRNA_M-pyrifera_M_contig127858.5614.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig127858:300..410- (Macrocystis pyrifera P11B4 male)
ATGAAGCGGCAGGCGAGGGAGGGCAGCGAAAAGCTGACGTGCCCGAACAA
AAGTTGCGGAACGCGGCTGGGCTCTCTCAAGTGGACAGGCGCGCAGTGCT
CATGTAAGTAGATGAAGCGGCAGGCGAGGGAGGGCAGCGAAAAGCTGACG
TGCCCGAACAAAAGTTGCGGAACGCGGCTGGGCTCTCTCAAGTGGACAGG
CGCGCAGTGCTCATGTAAGTAG
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