mRNA_M-pyrifera_M_contig127796.5607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127796.5607.1
Unique NamemRNA_M-pyrifera_M_contig127796.5607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A843X2B5_COLES (Tr-type G domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843X2B5_COLES)

HSP 1 Score: 79.3 bits (194), Expect = 2.090e-17
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   10 FSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            FSR +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   61 FSRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAV 107
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A0A9M8R7_ARUDO (Tr-type G domain-containing protein n=2 Tax=PACMAD clade TaxID=147370 RepID=A0A0A9M8R7_ARUDO)

HSP 1 Score: 77.0 bits (188), Expect = 1.240e-16
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   10 FSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            ++R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   54 WARSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAV 100
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A8J5R1L3_ZIZPA (Tr-type G domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5R1L3_ZIZPA)

HSP 1 Score: 74.3 bits (181), Expect = 3.090e-16
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:   22 LASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:    1 MATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAV 43
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A565C0F1_9BRAS (Elongation factor Tu n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565C0F1_9BRAS)

HSP 1 Score: 79.3 bits (194), Expect = 4.610e-16
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 GVQFSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            G  F R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   51 GTSFWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGNAKAV 100
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A1D1Y650_9ARAE (Elongation factor Tu (Fragment) n=3 Tax=Araceae TaxID=4454 RepID=A0A1D1Y650_9ARAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.710e-16
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   10 FSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            FSR +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   69 FSRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAV 115
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A1D6LBY9_MAIZE (Elongation factor Tu n=2 Tax=Poaceae TaxID=4479 RepID=A0A1D6LBY9_MAIZE)

HSP 1 Score: 78.6 bits (192), Expect = 6.300e-16
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 GVQFSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            G  ++R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   50 GTLWARSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAV 99
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: B4FH57_MAIZE (Elongation factor Tu n=6 Tax=Poaceae TaxID=4479 RepID=B4FH57_MAIZE)

HSP 1 Score: 78.6 bits (192), Expect = 8.620e-16
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 GVQFSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            G  ++R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   48 GTLWARSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAV 97
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: K4A9U9_SETIT (Elongation factor Tu n=14 Tax=Poaceae TaxID=4479 RepID=K4A9U9_SETIT)

HSP 1 Score: 78.6 bits (192), Expect = 8.640e-16
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 GVQFSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            G  ++R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G A+A+
Sbjct:   49 GTLWARAMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAI 98
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BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: A0A446RD61_TRITD (Tr-type G domain-containing protein n=5 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446RD61_TRITD)

HSP 1 Score: 77.8 bits (190), Expect = 8.980e-16
Identity = 36/47 (76.60%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   10 FSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            ++R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G+A+A+
Sbjct:   53 WARSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGSAKAV 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Match: I1GKU6_BRADI (Elongation factor Tu n=43 Tax=Poaceae TaxID=4479 RepID=I1GKU6_BRADI)

HSP 1 Score: 78.2 bits (191), Expect = 1.190e-15
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 GVQFSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM 150
            G  ++R +A+FTRTKPHVNVGTIGHVDHGKT+L+AAITKVLAE G+A+A+
Sbjct:   52 GGLWARSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGSAKAV 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127796.5607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A843X2B5_COLES2.090e-1780.85Tr-type G domain-containing protein n=1 Tax=Coloca... [more]
A0A0A9M8R7_ARUDO1.240e-1676.60Tr-type G domain-containing protein n=2 Tax=PACMAD... [more]
A0A8J5R1L3_ZIZPA3.090e-1681.40Tr-type G domain-containing protein n=1 Tax=Zizani... [more]
A0A565C0F1_9BRAS4.610e-1676.00Elongation factor Tu n=1 Tax=Arabis nemorensis Tax... [more]
A0A1D1Y650_9ARAE4.710e-1680.85Elongation factor Tu (Fragment) n=3 Tax=Araceae Ta... [more]
A0A1D6LBY9_MAIZE6.300e-1674.00Elongation factor Tu n=2 Tax=Poaceae TaxID=4479 Re... [more]
B4FH57_MAIZE8.620e-1674.00Elongation factor Tu n=6 Tax=Poaceae TaxID=4479 Re... [more]
K4A9U9_SETIT8.640e-1674.00Elongation factor Tu n=14 Tax=Poaceae TaxID=4479 R... [more]
A0A446RD61_TRITD8.980e-1676.60Tr-type G domain-containing protein n=5 Tax=Tritic... [more]
I1GKU6_BRADI1.190e-1574.00Elongation factor Tu n=43 Tax=Poaceae TaxID=4479 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127796contigM-pyrifera_M_contig127796:1..150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog72658.Bostr.2983s0151.1.p
KEGG koko:K02358
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008144,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0017076,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
EggNOG OGs37JPA@33090,3G8ZT@35493,3HXSP@3699,COG0050@1,KOG0460@2759
COG Functional cat.J
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.4750164-CDS-M-pyrifera_M_contig127796:0..1501622815792.4750164-CDS-M-pyrifera_M_contig127796:0..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127796 1..150 -
1692277571.8353999-CDS-M-pyrifera_M_contig127796:0..1501692277571.8353999-CDS-M-pyrifera_M_contig127796:0..150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127796 1..150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127796.5607.1prot_M-pyrifera_M_contig127796.5607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127796 1..150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127796.5607.1

>prot_M-pyrifera_M_contig127796.5607.1 ID=prot_M-pyrifera_M_contig127796.5607.1|Name=mRNA_M-pyrifera_M_contig127796.5607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
GVQFSRGLASFTRTKPHVNVGTIGHVDHGKTSLSAAITKVLAEGGTAEAM
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mRNA from alignment at M-pyrifera_M_contig127796:1..150-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127796.5607.1 ID=mRNA_M-pyrifera_M_contig127796.5607.1|Name=mRNA_M-pyrifera_M_contig127796.5607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig127796:1..150- (Macrocystis pyrifera P11B4 male)
GGGGTGCAATTTTCCCGTGGGCTTGCTTCCTTCACGCGTACCAAGCCGCA
CGTGAACGTTGGGACGATCGGGCACGTGGATCACGGGAAGACTTCCTTGT
CTGCTGCGATCACCAAGGTTTTGGCGGAAGGTGGGACTGCAGAGGCGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127796:1..150-

>mRNA_M-pyrifera_M_contig127796.5607.1 ID=mRNA_M-pyrifera_M_contig127796.5607.1|Name=mRNA_M-pyrifera_M_contig127796.5607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig127796:1..150- (Macrocystis pyrifera P11B4 male)
GGGGTGCAATTTTCCCGTGGGCTTGCTTCCTTCACGCGTACCAAGCCGCA
CGTGAACGTTGGGACGATCGGGCACGTGGATCACGGGAAGACTTCCTTGT
CTGCTGCGATCACCAAGGTTTTGGCGGAAGGTGGGACTGCAGAGGCGATG
GGGGTGCAATTTTCCCGTGGGCTTGCTTCCTTCACGCGTACCAAGCCGCA
CGTGAACGTTGGGACGATCGGGCACGTGGATCACGGGAAGACTTCCTTGT
CTGCTGCGATCACCAAGGTTTTGGCGGAAGGTGGGACTGCAGAGGCGATG
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