mRNA_M-pyrifera_M_contig102565.557.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102565.557.1
Unique NamemRNA_M-pyrifera_M_contig102565.557.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: A0A152A9C1_9MYCE (Dynactin n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A9C1_9MYCE)

HSP 1 Score: 91.3 bits (225), Expect = 1.410e-19
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 QERLKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVPPDLVI 222
            + ++  G +V I ++PELG G V+Y+G TKF EG W+GIEL   NGKNDG+VK  KYF+CK  HGIFV  ++VI
Sbjct:    4 ETKISVGLRVTILNKPELGKGYVKYIGLTKFAEGRWVGIELDGPNGKNDGTVKGDKYFDCKPNHGIFVRSNIVI 77          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: F4PLR7_CAVFA (Dynactin 150 kDa subunit n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLR7_CAVFA)

HSP 1 Score: 90.9 bits (224), Expect = 1.920e-19
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVPPDLVITLE 231
            L  GS+V I  +PELG G ++YVG  KF+ G W+GIEL  + G+NDG+V+  KYF+C+A HGIFV P++VI +E
Sbjct:    7 LPVGSRVQIKDKPELGTGTIKYVGMAKFQTGRWVGIELDTSVGRNDGTVQGEKYFDCRAAHGIFVKPNMVIVIE 80          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: D3AX75_POLPP (Dynactin 150 kDa subunit n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AX75_POLPP)

HSP 1 Score: 90.5 bits (223), Expect = 2.620e-19
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVPPDLVI 222
            ++ G++V I  +PE G G VRYVG TKF  G W+GIEL Q  GKNDGSV+  KYF+CKA HGIFV  ++V+
Sbjct:    7 IQVGTRVTISGKPEFGEGTVRYVGMTKFNSGRWVGIELDQPVGKNDGSVQGVKYFDCKAPHGIFVKINVVV 77          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: A0A7S3YAS2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAS2_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 3.110e-17
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 RLKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVPPDLVITLEE 234
            + + G QVI+  +     G++R+ G T+F  G W+G+EL   NGKNDGSVK T+YFNC+  HG+FV P+ V  +++
Sbjct:    6 QFETGQQVIVTLKTLEVVGVLRFYGETEFASGIWVGVELDTENGKNDGSVKGTRYFNCRRNHGLFVRPNQVALVDQ 81          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: A0A8J4Q222_9MYCE (CAP-Gly domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q222_9MYCE)

HSP 1 Score: 84.0 bits (206), Expect = 5.210e-17
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   19 GSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVPPDLVITLE 231
            GS+  I  +PELG G+V+YVG TKF  G W+GIEL +  GKNDG+V+  +YF+CK  HGIFV  ++V TLE
Sbjct:   11 GSRASITGKPELGLGMVKYVGMTKFAAGRWVGIELDKPAGKNDGTVQGERYFDCKPSHGIFVKTNMV-TLE 80          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: A0A2M4BWD2_9DIPT (Putative cytoskeleton-associated protein (Fragment) n=1 Tax=Anopheles marajoara TaxID=58244 RepID=A0A2M4BWD2_9DIPT)

HSP 1 Score: 79.7 bits (195), Expect = 4.790e-16
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVP 207
            L  G +VI+ S     PGI++Y+G TKF  GTW G++L +A+GKNDG+V   +YF C AK+GIFVP
Sbjct:  160 LNVGDRVIVSSGFGSRPGILKYLGETKFASGTWCGVQLDEASGKNDGTVDGVRYFECPAKYGIFVP 225          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: V3ZQJ3_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZQJ3_LOTGI)

HSP 1 Score: 80.9 bits (198), Expect = 6.330e-16
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGP--GIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVPPDLVI 222
            +KEG  V + S     P  G+VR+VG   F  G WIG+EL Q  GKNDGSV K +YF C+++HGIFV PD +I
Sbjct: 1677 VKEGEGVTVTSSRGTVPKSGVVRFVGQVDFAAGNWIGVELDQPEGKNDGSVNKQRYFKCRSRHGIFVRPDKLI 1749          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: A0A2M4CQ16_ANODA (Putative cytoskeleton-associated protein (Fragment) n=5 Tax=Nyssorhynchus TaxID=44543 RepID=A0A2M4CQ16_ANODA)

HSP 1 Score: 79.7 bits (195), Expect = 9.670e-16
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVP 207
            L  G +VI+ S     PGI++Y+G TKF  GTW G++L +A+GKNDG+V   +YF C AK+GIFVP
Sbjct:  234 LNVGDRVIVSSGFGSRPGILKYLGETKFASGTWCGVQLDEASGKNDGTVDGVRYFECPAKYGIFVP 299          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: A0A087ZFJ1_ANODA (Putative cytoskeleton-associated protein n=10 Tax=Anopheles TaxID=7164 RepID=A0A087ZFJ1_ANODA)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVP 207
            L  G +VI+ S     PGI++Y+G TKF  GTW G++L +A+GKNDG+V   +YF C AK+GIFVP
Sbjct:  154 LNVGDRVIVSSGFGSRPGILKYLGETKFASGTWCGVQLDEASGKNDGTVDGVRYFECPAKYGIFVP 219          
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Match: W5JBG2_ANODA (Restin n=1 Tax=Anopheles darlingi TaxID=43151 RepID=W5JBG2_ANODA)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 LKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDGSVKKTKYFNCKAKHGIFVP 207
            L  G +VI+ S     PGI++Y+G TKF  GTW G++L +A+GKNDG+V   +YF C AK+GIFVP
Sbjct:  216 LNVGDRVIVSSGFGSRPGILKYLGETKFASGTWCGVQLDEASGKNDGTVDGVRYFECPAKYGIFVP 281          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102565.557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A152A9C1_9MYCE1.410e-1955.41Dynactin n=1 Tax=Tieghemostelium lacteum TaxID=361... [more]
F4PLR7_CAVFA1.920e-1954.05Dynactin 150 kDa subunit n=1 Tax=Cavenderia fascic... [more]
D3AX75_POLPP2.620e-1957.75Dynactin 150 kDa subunit n=1 Tax=Polysphondylium p... [more]
A0A7S3YAS2_HETAK3.110e-1744.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J4Q222_9MYCE5.210e-1756.34CAP-Gly domain-containing protein n=1 Tax=Polyspho... [more]
A0A2M4BWD2_9DIPT4.790e-1653.03Putative cytoskeleton-associated protein (Fragment... [more]
V3ZQJ3_LOTGI6.330e-1652.05Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A2M4CQ16_ANODA9.670e-1653.03Putative cytoskeleton-associated protein (Fragment... [more]
A0A087ZFJ1_ANODA1.090e-1553.03Putative cytoskeleton-associated protein n=10 Tax=... [more]
W5JBG2_ANODA1.150e-1553.03Restin n=1 Tax=Anopheles darlingi TaxID=43151 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102565contigM-pyrifera_M_contig102565:340..594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog44689.DDB0220487
KEGG koko:K04648
KEGG Pathwayko04962,ko05016,map04962,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dynein associated protein
EggNOG OGs3XCF4@554915,COG5244@1,KOG0971@2759
COG Functional cat.DZ
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04812
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.3129141-CDS-M-pyrifera_M_contig102565:339..5941622815529.3129141-CDS-M-pyrifera_M_contig102565:339..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102565 340..594 -
1692277450.7320845-CDS-M-pyrifera_M_contig102565:339..5941692277450.7320845-CDS-M-pyrifera_M_contig102565:339..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102565 340..594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102565.557.1prot_M-pyrifera_M_contig102565.557.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102565 340..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102565.557.1

>prot_M-pyrifera_M_contig102565.557.1 ID=prot_M-pyrifera_M_contig102565.557.1|Name=mRNA_M-pyrifera_M_contig102565.557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
QERLKEGSQVIIPSRPELGPGIVRYVGNTKFKEGTWIGIELIQANGKNDG
SVKKTKYFNCKAKHGIFVPPDLVITLEEAAQQVLD
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mRNA from alignment at M-pyrifera_M_contig102565:340..594-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102565.557.1 ID=mRNA_M-pyrifera_M_contig102565.557.1|Name=mRNA_M-pyrifera_M_contig102565.557.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig102565:340..594- (Macrocystis pyrifera P11B4 male)
CAAGAGCGACTCAAGGAAGGATCACAGGTCATCATCCCCTCTCGCCCCGA GCTGGGCCCAGGAATCGTGCGGTATGTCGGCAACACCAAGTTCAAGGAGG GAACTTGGATTGGCATCGAATTGATTCAAGCCAACGGCAAGAACGATGGA TCTGTGAAGAAGACCAAGTACTTCAACTGCAAGGCCAAGCATGGCATCTT CGTTCCTCCAGACCTGGTCATCACTTTGGAGGAGGCAGCTCAGCAGGTGC TGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102565:340..594-

>mRNA_M-pyrifera_M_contig102565.557.1 ID=mRNA_M-pyrifera_M_contig102565.557.1|Name=mRNA_M-pyrifera_M_contig102565.557.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig102565:340..594- (Macrocystis pyrifera P11B4 male)
CAAGAGCGACTCAAGGAAGGATCACAGGTCATCATCCCCTCTCGCCCCGA
GCTGGGCCCAGGAATCGTGCGGTATGTCGGCAACACCAAGTTCAAGGAGG
GAACTTGGATTGGCATCGAATTGATTCAAGCCAACGGCAAGAACGATGGA
TCTGTGAAGAAGACCAAGTACTTCAACTGCAAGGCCAAGCATGGCATCTT
CGTTCCTCCAGACCTGGTCATCACTTTGGAGGAGGCAGCTCAGCAGGTGC
TGGATCAAGAGCGACTCAAGGAAGGATCACAGGTCATCATCCCCTCTCGC
CCCGAGCTGGGCCCAGGAATCGTGCGGTATGTCGGCAACACCAAGTTCAA
GGAGGGAACTTGGATTGGCATCGAATTGATTCAAGCCAACGGCAAGAACG
ATGGATCTGTGAAGAAGACCAAGTACTTCAACTGCAAGGCCAAGCATGGC
ATCTTCGTTCCTCCAGACCTGGTCATCACTTTGGAGGAGGCAGCTCAGCA
GGTGCTGGAT
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