mRNA_M-pyrifera_M_contig127572.5561.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127572.5561.1
Unique NamemRNA_M-pyrifera_M_contig127572.5561.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A2D6AKW1_9BACT (Por_Secre_tail domain-containing protein (Fragment) n=3 Tax=Bacteria TaxID=2 RepID=A0A2D6AKW1_9BACT)

HSP 1 Score: 112 bits (281), Expect = 7.460e-26
Identity = 63/165 (38.18%), Postives = 104/165 (63.03%), Query Frame = 1
Query:    1 IATGLDLLDTLDLSQNSIISISTISSLTNTTYINVSENHLQFGSLETLVEITNEIAYDNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSNDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            I++GLDLL  L++S N + +I  +S+LT+   I++S+N LQFGS+E +V       Y  Q   L++  + EE GN   VDRTV+G+ N Y W KNG  ++  G +  +   + + +GNY+ +VT++++P LTL T  V + + SL +D  +L+ IY++L+G + T
Sbjct:   63 ISSGLDLLADLNVSSNELNAIGDLSNLTSLATIDISDNRLQFGSIEPVVAQVPATVYGPQKAVLSRIRVLEEIGNVYTVDRTVTGSANAYSWTKNGTSIAETGASFDITISNFSADGNYVASVTSTAIPGLTLTTTPVELRVSSLERDSVSLIAIYDSLNGSSST 227          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A2E4LBJ7_9BACT (Por_Secre_tail domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E4LBJ7_9BACT)

HSP 1 Score: 110 bits (274), Expect = 6.860e-25
Identity = 64/163 (39.26%), Postives = 98/163 (60.12%), Query Frame = 1
Query:    7 TGLDLLDTLDLSQNSIISISTISSLTNTTYINVSENHLQFGSLETLVEITNEIAYDNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSNDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            TGL+ L  L+LS+NS+  I  +S+LT+   ++VS N+L+FGSLE ++ ++    Y  Q   LT+    E  G+   VDRTV+G+ N Y W KNG  ++   P+  +       +G YL  VTN++VP LTL T  V + + SL +D ++L+ IY++L G N T
Sbjct:  345 TGLESLIDLNLSRNSLSDIGDLSNLTSLQSVDVSNNNLEFGSLEGVLAVSPGAIYSPQKEVLTRVRSLESIGSTYTVDRTVTGSANSYTWIKNGSAIAQTSPSFDVTINDFTADGTYLARVTNTNVPGLTLTTAPVVLRVSSLERDSASLMVIYDSLQGNNST 507          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A2D6AKU7_9BACT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2D6AKU7_9BACT)

HSP 1 Score: 103 bits (257), Expect = 1.360e-22
Identity = 59/165 (35.76%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 IATGLDLLDTLDLSQNSIISISTISSLTNTTYINVSENHLQFGSLETLVEITNEIAYDNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSNDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            I++GL+ L  L++S N I SI  +S+L     +++S N LQFGS+E ++   + + Y  Q V L++    EE G    VDRT++G+ N Y W KNG  ++    +  +   + + +G+Y+ NVT+++VP LTL T  V + + SL +D ++L T+Y++L+G + T
Sbjct:  699 ISSGLEQLTILNVSGNEITSIGDLSNLAALETVDISNNKLQFGSIEPIIAQASSVTYSPQKVVLSRLRTLEEIGGEYTVDRTLTGSANQYSWTKNGASITQTSGSFVVAINNFSADGSYVANVTSTAVPGLTLTTAPVVLRVSSLERDSTSLRTVYDSLNGSSST 863          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A2E8MW90_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E8MW90_9RICK)

HSP 1 Score: 103 bits (257), Expect = 1.380e-22
Identity = 59/165 (35.76%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 IATGLDLLDTLDLSQNSIISISTISSLTNTTYINVSENHLQFGSLETLVEITNEIAYDNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSNDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            I++GL+ L  L++S N I SI  +S+L     +++S N LQFGS+E ++   + + Y  Q V L++    EE G    VDRT++G+ N Y W KNG  ++    +  +   + + +G+Y+ NVT+++VP LTL T  V + + SL +D ++L T+Y++L+G + T
Sbjct: 1290 ISSGLEQLTILNVSGNEITSIGDLSNLAALETVDISNNKLQFGSIEPIIAQASSVTYSPQKVVLSRLRTLEEIGGEYTVDRTLTGSANQYSWTKNGASITQTSGSFVVAINNFSADGSYVANVTSTAVPGLTLTTAPVVLRVSSLERDSTSLRTVYDSLNGSSST 1454          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A654E1L2_9BACT (Uncharacterized protein n=2 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654E1L2_9BACT)

HSP 1 Score: 102 bits (255), Expect = 2.560e-22
Identity = 68/171 (39.77%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    1 IATGLDLLDTLDLSQNSIISISTISSLTNTTYINVSENHLQFGSLETLVEITNEIAYDNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNG------EELSNDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            I+ GL+LL TLDLS N + S+           ++VS+N L F SLE  V I+  I Y  Q     +    E+ G N  +DRTV+G++N Y+WFK         EL+N G +L++   S  DEG Y V VTN  VP LT+ +  V + + SL +D +AL  IY+A+ G +WT
Sbjct: 1016 ISEGLELLATLDLSGNLLTSLXXXXXXXXXXXLDVSDNKLGFASLEPNVGISG-IVYSPQKAAGERIETLEQQGTNFTIDRTVTGSSNSYKWFKENLKTKAITELTNTGSSLTIAIESFNDEGGYFVEVTNDLVPGLTIKSEPVVLKVSSLERDFAALQNIYDAMGGESWT 1185          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A432KGI0_9BACT (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A432KGI0_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 3.870e-14
Identity = 51/165 (30.91%), Postives = 89/165 (53.94%), Query Frame = 1
Query:   10 GLDLLDTLDLSQNSIISISTISS-LTNTTYINVSENHLQFGSLETLVEITNEIAYDNQAVTLTQEV-ISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSNDGP-TLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
             L+ +  +D S N++  +S + + + N   +N+S N L F  LE    I N   Y+NQ       + I E  G ++ +    + + N ++W+K+  +++ +   TL+L N   +DEG Y V + NS++PDLTLI+ A  + I SL +D  AL   Y++ +G  W+
Sbjct:  944 SLNFIREIDFSNNNLTDVSALENQINNLNILNLSGNSLSFEQLEGFTTIPN-FNYNNQNFEYNLPIEIFESLGTDISISVQANASANTFQWYKDSVQIAGETTQTLNLPNAQRSDEGFYYVEINNSNLPDLTLISTATEVKISSLERDVIALRQFYDSTNGDGWS 1107          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A654DZ85_9BACT (Uncharacterized protein n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654DZ85_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 5.380e-14
Identity = 56/135 (41.48%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  103 VSENHLQFGSLETLVEITNEIAY---DNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSNDG-PTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            VS N L FG+LE L  +  E +Y   D+  V L   V+S   G ++I+     GT + Y W K+G+ L +    +L L NL++ D G Y   VTN  +PDLTL    V + + SL  D  ALL IY+ALDG NWT
Sbjct: 1543 VSHNQLDFGALEALSGVLYEWSYAPQDSVGVRL-DTVVS--VGEDLILIADGGGTADSYTWKKDGDILVDQVMDSLKLLNLTIGDRGVYAYEVTNLLLPDLTLYGREVQLEVSSLEDDSLALLQIYDALDGANWT 1674          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A1I3MRT5_9FLAO (Gliding motility-associated C-terminal domain-containing protein n=1 Tax=Olleya namhaensis TaxID=1144750 RepID=A0A1I3MRT5_9FLAO)

HSP 1 Score: 69.7 bits (169), Expect = 8.700e-11
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 1
Query:   82 TNTTYINVSENHLQFGSLET---LVEITNEIAYDN-QAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNG--EELSNDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISI--PSLTKDRS---ALLTIYEALDGPNWT 495
            T+ T+++ +  + QFG  E      + +  I  DN QA     E  +    +N  +    SGT N Y+WFKNG  E +     TL L NL   D G Y   VT++ V DLT++ N VTIS+  P  T  +S   ALL +Y + +G NWT
Sbjct: 1032 TSLTWLSFNSCNYQFGDFENEFNFYDTSISIFDDNPQAKVDNIETRNLNTADNTTITTNCSGTQNNYKWFKNGTTEIVGETNATLILNNLQPIDAGIYHCEVTSNIVTDLTILRNEVTISVANPPCTIPQSEIDALLALYSSTNGANWT 1180          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: UPI0007EDB351 (leucine-rich repeat domain-containing protein n=1 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI0007EDB351)

HSP 1 Score: 69.3 bits (168), Expect = 1.160e-10
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   97 INVSENHLQFGSLETL-------VEITNEIAYDNQAVTLTQ---EVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELSND-GPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPS--LTKDRSALLTIYEALDGPNW 492
            +N+S+N   F  LE          ++++   Y  Q+   T+   E+I EE     +   T    NN Y+W K+G +++     T ++ N+ L+DEG Y   + NS + DLTLI N VT+ + S     D++AL+T Y A DGPNW
Sbjct:  666 LNLSQNKFVFQDLENEHTSYKNNPKLSSRYTYQPQSNIDTKKIIELIEEELF--TLTAETTQSINNTYQWRKDGVDITGAINRTYTINNIVLSDEGVYDCVIKNSIITDLTLIKNQVTLKVESKDAIHDKNALITFYNATDGPNW 808          
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Match: A0A1M5EZS3_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Tenacibaculum mesophilum TaxID=104268 RepID=A0A1M5EZS3_9FLAO)

HSP 1 Score: 68.6 bits (166), Expect = 2.140e-10
Identity = 46/146 (31.51%), Postives = 72/146 (49.32%), Query Frame = 1
Query:   97 INVSENHLQFGSLETLVEITN--EIAYDNQAVTLTQ---------EVISEEAGNNVIVDRT-VSGTNNIYRWFKNGEELSN-DGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRSALLTIYEALDGPNWT 495
            +++S N++ F   E +    N  ++  DN A T T          E I    G N+    T ++  NN Y+W+KN   +     PT  +   +L D G Y   V N++VP+LTL  N +  +      DR+AL+++Y+A DG NWT
Sbjct:  198 LDISNNNINFSVFERVPSFDNIAKVLEDNVA-TFTYSPQNRVSEIETIELNVGENISFSITGLTSANNTYQWYKNDVPIGGATNPTYQITGSTLTDAGVYYCEVKNANVPNLTLKRNIINYNTIGAINDRNALISLYDATDGANWT 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127572.5561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6AKW1_9BACT7.460e-2638.18Por_Secre_tail domain-containing protein (Fragment... [more]
A0A2E4LBJ7_9BACT6.860e-2539.26Por_Secre_tail domain-containing protein n=3 Tax=B... [more]
A0A2D6AKU7_9BACT1.360e-2235.76Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A2E8MW90_9RICK1.380e-2235.76Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
A0A654E1L2_9BACT2.560e-2239.77Uncharacterized protein n=2 Tax=Marinoscillum sp. ... [more]
A0A432KGI0_9BACT3.870e-1430.91Fibronectin type-III domain-containing protein (Fr... [more]
A0A654DZ85_9BACT5.380e-1441.48Uncharacterized protein n=1 Tax=Marinoscillum sp. ... [more]
A0A1I3MRT5_9FLAO8.700e-1136.24Gliding motility-associated C-terminal domain-cont... [more]
UPI0007EDB3511.160e-1033.79leucine-rich repeat domain-containing protein n=1 ... [more]
A0A1M5EZS3_9FLAO2.140e-1031.51Por secretion system C-terminal sorting domain-con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127572contigM-pyrifera_M_contig127572:5..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog1484460.JSWG01000001_gene2209
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Leucine Rich Repeat
EggNOG OGs1I0CI@117743,4NI2K@976,COG4886@1,COG4886@2
COG Functional cat.G
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.2480474-CDS-M-pyrifera_M_contig127572:4..4991622815790.2480474-CDS-M-pyrifera_M_contig127572:4..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127572 5..499 +
1692277570.7785342-CDS-M-pyrifera_M_contig127572:4..4991692277570.7785342-CDS-M-pyrifera_M_contig127572:4..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127572 5..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127572.5561.1prot_M-pyrifera_M_contig127572.5561.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127572 5..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127572.5561.1

>prot_M-pyrifera_M_contig127572.5561.1 ID=prot_M-pyrifera_M_contig127572.5561.1|Name=mRNA_M-pyrifera_M_contig127572.5561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
IATGLDLLDTLDLSQNSIISISTISSLTNTTYINVSENHLQFGSLETLVE
ITNEIAYDNQAVTLTQEVISEEAGNNVIVDRTVSGTNNIYRWFKNGEELS
NDGPTLSLENLSLADEGNYLVNVTNSSVPDLTLITNAVTISIPSLTKDRS
ALLTIYEALDGPNWT
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mRNA from alignment at M-pyrifera_M_contig127572:5..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127572.5561.1 ID=mRNA_M-pyrifera_M_contig127572.5561.1|Name=mRNA_M-pyrifera_M_contig127572.5561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig127572:5..499+ (Macrocystis pyrifera P11B4 male)
ATTGCAACTGGACTTGATTTGCTAGACACCTTGGATTTATCGCAAAACAG CATCATTTCCATCAGTACGATCTCATCTCTAACCAATACAACTTATATCA ATGTTTCGGAAAATCATTTACAGTTCGGCTCTCTTGAAACCTTAGTTGAG ATAACTAACGAGATAGCGTATGACAATCAGGCCGTGACTCTTACACAAGA AGTAATCTCTGAAGAAGCCGGTAATAACGTGATCGTAGATCGCACTGTAT CAGGAACAAATAATATTTATCGTTGGTTTAAAAATGGAGAGGAATTGAGC AATGATGGGCCAACCCTTTCTCTGGAAAATCTCTCTCTTGCTGATGAGGG AAATTACCTGGTTAATGTTACAAATTCATCCGTTCCAGATCTGACTTTGA TCACTAATGCGGTGACAATCTCTATTCCTTCCCTGACAAAAGACCGATCA GCATTACTTACTATATACGAAGCATTAGATGGGCCAAATTGGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127572:5..499+

>mRNA_M-pyrifera_M_contig127572.5561.1 ID=mRNA_M-pyrifera_M_contig127572.5561.1|Name=mRNA_M-pyrifera_M_contig127572.5561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig127572:5..499+ (Macrocystis pyrifera P11B4 male)
ATTGCAACTGGACTTGATTTGCTAGACACCTTGGATTTATCGCAAAACAG
CATCATTTCCATCAGTACGATCTCATCTCTAACCAATACAACTTATATCA
ATGTTTCGGAAAATCATTTACAGTTCGGCTCTCTTGAAACCTTAGTTGAG
ATAACTAACGAGATAGCGTATGACAATCAGGCCGTGACTCTTACACAAGA
AGTAATCTCTGAAGAAGCCGGTAATAACGTGATCGTAGATCGCACTGTAT
CAGGAACAAATAATATTTATCGTTGGTTTAAAAATGGAGAGGAATTGAGC
AATGATGGGCCAACCCTTTCTCTGGAAAATCTCTCTCTTGCTGATGAGGG
AAATTACCTGGTTAATGTTACAAATTCATCCGTTCCAGATCTGACTTTGA
TCACTAATGCGGTGACAATCTCTATTCCTTCCCTGACAAAAGACCGATCA
GCATTACTTACTATATACGAAGCATTAGATGGGCCAAATTGGACAATTGC
AACTGGACTTGATTTGCTAGACACCTTGGATTTATCGCAAAACAGCATCA
TTTCCATCAGTACGATCTCATCTCTAACCAATACAACTTATATCAATGTT
TCGGAAAATCATTTACAGTTCGGCTCTCTTGAAACCTTAGTTGAGATAAC
TAACGAGATAGCGTATGACAATCAGGCCGTGACTCTTACACAAGAAGTAA
TCTCTGAAGAAGCCGGTAATAACGTGATCGTAGATCGCACTGTATCAGGA
ACAAATAATATTTATCGTTGGTTTAAAAATGGAGAGGAATTGAGCAATGA
TGGGCCAACCCTTTCTCTGGAAAATCTCTCTCTTGCTGATGAGGGAAATT
ACCTGGTTAATGTTACAAATTCATCCGTTCCAGATCTGACTTTGATCACT
AATGCGGTGACAATCTCTATTCCTTCCCTGACAAAAGACCGATCAGCATT
ACTTACTATATACGAAGCATTAGATGGGCCAAATTGGACA
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