mRNA_M-pyrifera_M_contig127518.5547.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127518.5547.1
Unique NamemRNA_M-pyrifera_M_contig127518.5547.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A3A6MSW1_9FIRM (AAA_27 domain-containing protein n=1 Tax=Candidatus Desulforudis sp. TaxID=2093368 RepID=A0A3A6MSW1_9FIRM)

HSP 1 Score: 98.2 bits (243), Expect = 8.930e-21
Identity = 63/147 (42.86%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   79 GQLQQLLKGVETEEG----------VAELMDQERELQEGLADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRV-LGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            G++Q+L++G+   E             EL  Q   ++E L    RE DRL L++ +L+ AD E+R  H+PDVL+RAG +L   T GRY +LM    E G+ RL V   D    V +G PLSRGT DQ+ LA+R+A+IDHLD   E L
Sbjct:  715 GRVQELVEGIARLENDIQAHMRGSSPGELDGQIAAIEEELQTLARERDRLVLMRLILKRADREFREQHQPDVLRRAGSYLERITEGRYTRLMMLAVEGGSERLVVQRGDRTEPVTVGHPLSRGTLDQIFLAFRLAVIDHLDNGHETL 861          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A7Y2MVJ1_9BACT (AAA family ATPase n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2MVJ1_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 2.250e-20
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  178 RREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            RREHDRL +L  L+  AD   R  H+PD+L+ AGE+L   TGGRY +L   +D +   R+     DG R V   PLS GTR+QV+LA R+AL+ HLD+ GERL
Sbjct:  739 RREHDRLWILSVLVDEADRRVRETHQPDILRLAGENLRLLTGGRYDRLEVSDDRSRELRVSGPALDGPREV-AEPLSTGTREQVYLALRLALVAHLDEGGERL 840          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A424Y6R5_9CLOT (AAA_27 domain-containing protein n=1 Tax=Tindallia sp. MSAO_Bac2 TaxID=2293856 RepID=A0A424Y6R5_9CLOT)

HSP 1 Score: 95.5 bits (236), Expect = 7.750e-20
Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  154 LQEGLADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGA-PLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            LQ+ L +A RE DRL LL  +L  AD ++R +++PDVL++AG++L+A TGG+Y +L+  +D +G   LE+V  D    V    PLSRGT +QV+LA R+AL++HLD+  +RL
Sbjct:  735 LQDKLDEAARESDRLLLLYNILADADRKYREENQPDVLQKAGQYLSAITGGKYERLLVKDDGSG---LELVSKDYNFPVEAIHPLSRGTLEQVYLALRLALVEHLDEGKDRL 843          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A0P9CWM7_9GAMM (Uncharacterized protein YhaN n=1 Tax=Thiohalorhabdus denitrificans TaxID=381306 RepID=A0A0P9CWM7_9GAMM)

HSP 1 Score: 95.5 bits (236), Expect = 7.760e-20
Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  151 ELQEGLADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRL------EVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            EL+  + +A R HDRLR+L+ L+R AD  +R  H+PDVL+RA  +L   TGGRY +L+ +E       L       + G DGE     A LSRGTRDQV LA R+A+ DHLD   ERL
Sbjct:  729 ELEAEMEEAGRAHDRLRVLERLVREADRRFREAHQPDVLRRASAYLADVTGGRYTQLLMEEGGGDGALLVRDAGGTLRGVDGE----SAELSRGTRDQVFLALRLAVADHLDAGHERL 842          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A7Y2FGB4_9BACT (AAA family ATPase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2FGB4_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 3.640e-19
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  115 EEGVAELMDQERELQEGLADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            E   A+L  ++  L E L +ARRE DR  LL  ++R  +  +R +HEPD+ KRAGEHL+  T GRY +   +E ++    L    A GE R    P S+GT DQ++ + R+AL+DHL+  GE L
Sbjct:  724 ERTAADLAGEKAALGEELQEARRERDRKALLARIVREGEARYRREHEPDIYKRAGEHLSVITNGRYDRFSVEEGKSPRPMLHSHEA-GEARTAAEPFSQGTLDQLYWSLRMALVDHLEAGGEPL 846          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A2T2V7H5_9BACT (AAA_27 domain-containing protein n=1 Tax=Bacteroidetes bacterium QS_8_68_28 TaxID=1919110 RepID=A0A2T2V7H5_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 4.970e-19
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  166 LADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            LADA R  DRL LL G+LR AD  +R  H+P+V+K+AG +L   TGGRY  L   E EN    +       E + + +PLSRG RDQVHLA R AL+D LD+  E L
Sbjct:  746 LADAGRRRDRLALLAGVLRRADHAFRRKHQPEVVKQAGRYLRTITGGRYRHLAL-EGENDRLHVSRTPEGTEAQPVASPLSRGLRDQVHLALRFALLDRLDREQEAL 851          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A7Y3FR43_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3FR43_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 7.090e-19
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  172 DARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            DA RE DR  +L  ++R AD  +R  H+PD+LK AG  L   TGGRY +++  E ++ A  L+  G     RV G+PLS GTR+QV+LA R+A+IDHLD  GERL
Sbjct:  315 DAIRERDRAFVLAHVVREADRRFREAHQPDILKSAGRQLGHITGGRYNRIIVGEGDDEAFYLKGPGFPKPVRV-GSPLSTGTREQVYLALRLAIIDHLDARGERL 418          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A7Y3I845_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3I845_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 8.890e-19
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  172 DARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            DA RE DR  +L  ++R AD  +R  H+PD+LK AG  L   TGGRY +++  E ++ A  L+  G     RV G+PLS GTR+QV+LA R+A+IDHLD  GERL
Sbjct:  542 DAIRERDRAFVLAHVVREADRRFREAHQPDILKSAGRQLGHITGGRYNRIIVGEGDDEAFYLKGPGFPKPVRV-GSPLSTGTREQVYLALRLAIIDHLDARGERL 645          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A2P6BZZ8_9BACT (AAA_27 domain-containing protein n=1 Tax=Salinibacter sp. 10B TaxID=1923971 RepID=A0A2P6BZZ8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 1.260e-18
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  190 DRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGA-DGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            DR  LL GLLR AD E+R  H+PDV++RA  +L   T GRY +L  DE ++   RL V  A +   + +G PLSRGT DQ++LA R+A+IDHLD   ERL
Sbjct:  749 DRRMLLAGLLRTADAEFRRKHQPDVIRRASSYLHTITHGRYERLALDEQDD---RLVVFEANEAFSQSVGPPLSRGTLDQIYLALRLAIIDHLDADRERL 845          
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Match: A0A7V6P035_9CLOT (AAA family ATPase n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7V6P035_9CLOT)

HSP 1 Score: 90.9 bits (224), Expect = 3.160e-18
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  127 AELMDQERELQEGLADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFTGGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIALIDHLDQSGERL 486
            A++  +   L++ L     E DRL LL  +L+ AD  +R +H+PDVLK+AG +L   T G Y +L+  E E     +   G+   R V  + LSRGTR+QV+LA R+AL+DHLD   ERL
Sbjct:  716 ADIQGETASLKDELGKVETERDRLVLLCNILKEADRTFREEHQPDVLKKAGTYLYIITSGSYDRLLLSEKEKDTMEVREAGSGKTREV--SLLSRGTREQVYLALRLALVDHLDPVNERL 833          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127518.5547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3A6MSW1_9FIRM8.930e-2142.86AAA_27 domain-containing protein n=1 Tax=Candidatu... [more]
A0A7Y2MVJ1_9BACT2.250e-2050.49AAA family ATPase n=2 Tax=Gemmatimonadetes bacteri... [more]
A0A424Y6R5_9CLOT7.750e-2047.32AAA_27 domain-containing protein n=1 Tax=Tindallia... [more]
A0A0P9CWM7_9GAMM7.760e-2047.46Uncharacterized protein YhaN n=1 Tax=Thiohalorhabd... [more]
A0A7Y2FGB4_9BACT3.640e-1941.94AAA family ATPase n=1 Tax=Gemmatimonadetes bacteri... [more]
A0A2T2V7H5_9BACT4.970e-1949.53AAA_27 domain-containing protein n=1 Tax=Bacteroid... [more]
A0A7Y3FR43_9BACT7.090e-1949.52Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A7Y3I845_9BACT8.890e-1949.52Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A2P6BZZ8_9BACT1.260e-1851.00AAA_27 domain-containing protein n=1 Tax=Salinibac... [more]
A0A7V6P035_9CLOT3.160e-1842.50AAA family ATPase n=1 Tax=Clostridiaceae bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127518contigM-pyrifera_M_contig127518:18..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue4e-12
Seed eggNOG ortholog1304880.JAGB01000004_gene1370
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase involved in DNA repair
EggNOG OGsCOG0419@1,COG0419@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.649554-CDS-M-pyrifera_M_contig127518:17..5031622815789.649554-CDS-M-pyrifera_M_contig127518:17..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127518 18..503 +
1692277570.5303595-CDS-M-pyrifera_M_contig127518:17..5031692277570.5303595-CDS-M-pyrifera_M_contig127518:17..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127518 18..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127518.5547.1prot_M-pyrifera_M_contig127518.5547.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127518 18..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127518.5547.1

>prot_M-pyrifera_M_contig127518.5547.1 ID=prot_M-pyrifera_M_contig127518.5547.1|Name=mRNA_M-pyrifera_M_contig127518.5547.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
LEVAERGRERERAELEAERAELLEERGQLQQLLKGVETEEGVAELMDQER
ELQEGLADARREHDRLRLLQGLLRVADLEWRADHEPDVLKRAGEHLTAFT
GGRYIKLMSDEDENGARRLEVVGADGERRVLGAPLSRGTRDQVHLAWRIA
LIDHLDQSGERL
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mRNA from alignment at M-pyrifera_M_contig127518:18..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127518.5547.1 ID=mRNA_M-pyrifera_M_contig127518.5547.1|Name=mRNA_M-pyrifera_M_contig127518.5547.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig127518:18..503+ (Macrocystis pyrifera P11B4 male)
CTCGAGGTCGCCGAGCGCGGGCGGGAGCGGGAGCGCGCCGAGCTCGAGGC CGAGCGCGCCGAGCTGCTCGAGGAGCGCGGGCAACTGCAACAGCTCTTGA AGGGCGTCGAGACCGAGGAGGGCGTGGCCGAGCTGATGGACCAGGAGCGC GAGCTCCAGGAAGGGCTCGCGGACGCGCGGCGCGAGCACGACCGACTGCG CCTGTTGCAGGGGCTGTTGCGCGTGGCAGACCTCGAGTGGCGCGCGGACC ACGAGCCGGACGTGCTCAAGCGCGCGGGCGAGCATCTCACCGCGTTCACC GGCGGGCGCTACATCAAGTTGATGTCGGACGAGGACGAGAACGGCGCGCG GCGGCTCGAGGTCGTCGGCGCGGATGGCGAGCGGCGGGTCTTGGGCGCGC CGCTCAGCCGCGGCACGCGCGACCAGGTCCACTTGGCGTGGCGCATCGCG CTGATCGACCACCTCGATCAGTCTGGCGAGCGCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127518:18..503+

>mRNA_M-pyrifera_M_contig127518.5547.1 ID=mRNA_M-pyrifera_M_contig127518.5547.1|Name=mRNA_M-pyrifera_M_contig127518.5547.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig127518:18..503+ (Macrocystis pyrifera P11B4 male)
CTCGAGGTCGCCGAGCGCGGGCGGGAGCGGGAGCGCGCCGAGCTCGAGGC
CGAGCGCGCCGAGCTGCTCGAGGAGCGCGGGCAACTGCAACAGCTCTTGA
AGGGCGTCGAGACCGAGGAGGGCGTGGCCGAGCTGATGGACCAGGAGCGC
GAGCTCCAGGAAGGGCTCGCGGACGCGCGGCGCGAGCACGACCGACTGCG
CCTGTTGCAGGGGCTGTTGCGCGTGGCAGACCTCGAGTGGCGCGCGGACC
ACGAGCCGGACGTGCTCAAGCGCGCGGGCGAGCATCTCACCGCGTTCACC
GGCGGGCGCTACATCAAGTTGATGTCGGACGAGGACGAGAACGGCGCGCG
GCGGCTCGAGGTCGTCGGCGCGGATGGCGAGCGGCGGGTCTTGGGCGCGC
CGCTCAGCCGCGGCACGCGCGACCAGGTCCACTTGGCGTGGCGCATCGCG
CTGATCGACCACCTCGATCAGTCTGGCGAGCGCTTGCTCGAGGTCGCCGA
GCGCGGGCGGGAGCGGGAGCGCGCCGAGCTCGAGGCCGAGCGCGCCGAGC
TGCTCGAGGAGCGCGGGCAACTGCAACAGCTCTTGAAGGGCGTCGAGACC
GAGGAGGGCGTGGCCGAGCTGATGGACCAGGAGCGCGAGCTCCAGGAAGG
GCTCGCGGACGCGCGGCGCGAGCACGACCGACTGCGCCTGTTGCAGGGGC
TGTTGCGCGTGGCAGACCTCGAGTGGCGCGCGGACCACGAGCCGGACGTG
CTCAAGCGCGCGGGCGAGCATCTCACCGCGTTCACCGGCGGGCGCTACAT
CAAGTTGATGTCGGACGAGGACGAGAACGGCGCGCGGCGGCTCGAGGTCG
TCGGCGCGGATGGCGAGCGGCGGGTCTTGGGCGCGCCGCTCAGCCGCGGC
ACGCGCGACCAGGTCCACTTGGCGTGGCGCATCGCGCTGATCGACCACCT
CGATCAGTCTGGCGAGCGCTTG
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