mRNA_M-pyrifera_M_contig127512.5546.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127512.5546.1
Unique NamemRNA_M-pyrifera_M_contig127512.5546.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: M4C0R6_HYAAE (Cytochrome c domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4C0R6_HYAAE)

HSP 1 Score: 122 bits (305), Expect = 2.850e-32
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRFTK 264
            YF GGAI ME+ L D  IDYEDGTP + SQMAKDVSVFL WAAEPEHD RK+ G++A  V+A +C  T Y+KRLKW+ +KTR++ +TK
Sbjct:  183 YFGGGAIAMERQLQDGQIDYEDGTPCTTSQMAKDVSVFLAWAAEPEHDVRKKQGMQAVIVLAALCGLTGYYKRLKWAPLKTRKISYTK 270
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BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A0D2VXZ3_CAPO3 (Cytochrome c-1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VXZ3_CAPO3)

HSP 1 Score: 120 bits (301), Expect = 1.210e-31
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRFT 261
            YFAGGAIGM QAL+DEMI+YEDGTP+S SQMAKDV+ FL WAAEPE +ERKRMG+KA  ++ L    T Y KR +WSV+KTR+  +T
Sbjct:  185 YFAGGAIGMAQALYDEMIEYEDGTPASQSQMAKDVATFLAWAAEPEMNERKRMGMKAITLLTLAAGATWYVKRQRWSVLKTRKHVYT 271
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BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A7J7A550_9COLE (Cytochrome c domain-containing protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7A550_9COLE)

HSP 1 Score: 120 bits (301), Expect = 2.490e-31
Identity = 51/86 (59.30%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRF 258
            YF GGAIGM QAL+ E+I+Y DGTP+S SQ+AKDV  FL WAAEPEHDERK+M +K FF+ +++   ++Y+KR KWS++K+R++ F
Sbjct:  217 YFIGGAIGMAQALYSEIIEYSDGTPASTSQLAKDVCTFLKWAAEPEHDERKKMIIKTFFIFSILGAISIYYKRFKWSIIKSRKIEF 302
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BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A7J7B8S2_9COLE (Cytochrome c domain-containing protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7B8S2_9COLE)

HSP 1 Score: 120 bits (300), Expect = 3.570e-31
Identity = 50/86 (58.14%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRF 258
            YF GGA  M QAL+DE+I+YEDGTP+S SQ+AKD+  FL WAAEPEHD+RK+M +K+FF+ + +C+ + Y+KR KW+V+K+R++ F
Sbjct:  217 YFTGGATSMAQALYDEVIEYEDGTPASASQLAKDICTFLKWAAEPEHDDRKQMIIKSFFMFSFLCLISFYYKRHKWTVLKSRKIEF 302
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BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A0P5YI70_9CRUS (Cytochrome c1, heme protein, mitochondrial n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5YI70_9CRUS)

HSP 1 Score: 117 bits (292), Expect = 6.450e-31
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQL 252
            YF GGAIGM QAL++E+I+Y DGTP++ SQMAKDV++FL WAAEPEHD+RK+M LKA  + + +     Y+KR KWSVVKTR++
Sbjct:  123 YFPGGAIGMAQALYNELIEYSDGTPATASQMAKDVAIFLKWAAEPEHDDRKKMALKALMLFSFLISVAYYWKRHKWSVVKTRKI 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A5B7DKX5_PORTR (Cytochrome c1, heme protein, mitochondrial n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DKX5_PORTR)

HSP 1 Score: 115 bits (289), Expect = 1.180e-30
Identity = 51/86 (59.30%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRF 258
            YF GGAIGM QAL++E+++Y DGTP++ SQMAKDVSVFL WAAEPEHD+RK+M LKA  + +++   T Y KR KW+V+K+R++ +
Sbjct:  107 YFVGGAIGMAQALYNEVMEYSDGTPATASQMAKDVSVFLKWAAEPEHDDRKKMALKALMMFSMLFSITYYIKRHKWAVLKSRKIAY 192
[Close]
BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A024GLL4_9STRA (Cytochrome c domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GLL4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.770e-30
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRFTK 264
            YF+GGAI ME+ L D  IDYEDGTP++ SQMAKDV+VFL WAAEPEHDERK+ G+K    +  + + T Y+KRLKW+ +K+R++ +T+
Sbjct:  183 YFSGGAIAMERQLQDGQIDYEDGTPATTSQMAKDVAVFLAWAAEPEHDERKKQGMKVLLAMGALALLTGYYKRLKWAPLKSRKISYTQ 270
[Close]
BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A1Y1JZP8_PHOPY (Cytochrome c domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1JZP8_PHOPY)

HSP 1 Score: 117 bits (293), Expect = 3.750e-30
Identity = 49/86 (56.98%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRF 258
            YF GGAI M QAL++E+I+Y DGTP++ SQ+AKDV+ FL WA EPEHD+RKR  +K+FF+ + +C+ + Y+KR KWSV+K+R++ F
Sbjct:  217 YFPGGAISMAQALYNEVIEYGDGTPATASQLAKDVATFLKWAGEPEHDDRKRYMIKSFFLFSFLCVVSYYYKRHKWSVIKSRKIEF 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A0P4ZQJ6_9CRUS (Cytochrome c1, heme protein, mitochondrial n=8 Tax=Daphnia TaxID=6668 RepID=A0A0P4ZQJ6_9CRUS)

HSP 1 Score: 117 bits (292), Expect = 3.820e-30
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQL 252
            YF GGAIGM QAL++E+I+Y DGTP++ SQMAKDV++FL WAAEPEHD+RK+M LKA  + + +     Y+KR KWSVVKTR++
Sbjct:  200 YFPGGAIGMAQALYNELIEYSDGTPATASQMAKDVAIFLKWAAEPEHDDRKKMALKALMLFSFLISVAYYWKRHKWSVVKTRKI 283
[Close]
BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Match: A0A8B7XQ57_ACAPL (cytochrome c1, heme protein, mitochondrial-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7XQ57_ACAPL)

HSP 1 Score: 117 bits (293), Expect = 3.900e-30
Identity = 52/86 (60.47%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 YFAGGAIGMEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAFFVIALMCIPTLYFKRLKWSVVKTRQLRF 258
            YF G AIGM  AL++E+I+YEDGTP+++SQ+AKDVS FL WAAEPEHD+RKRMGLKA  +++L+   + Y KR KWSV+K+R++ +
Sbjct:  218 YFPGQAIGMAPALYNEIIEYEDGTPATLSQLAKDVSTFLRWAAEPEHDQRKRMGLKALMILSLLLGASYYVKRQKWSVLKSRKIAY 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127512.5546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M4C0R6_HYAAE2.850e-3263.64Cytochrome c domain-containing protein n=7 Tax=Per... [more]
A0A0D2VXZ3_CAPO31.210e-3166.67Cytochrome c-1 n=1 Tax=Capsaspora owczarzaki (stra... [more]
A0A7J7A550_9COLE2.490e-3159.30Cytochrome c domain-containing protein n=1 Tax=Lam... [more]
A0A7J7B8S2_9COLE3.570e-3158.14Cytochrome c domain-containing protein n=1 Tax=Abs... [more]
A0A0P5YI70_9CRUS6.450e-3161.90Cytochrome c1, heme protein, mitochondrial n=1 Tax... [more]
A0A5B7DKX5_PORTR1.180e-3059.30Cytochrome c1, heme protein, mitochondrial n=1 Tax... [more]
A0A024GLL4_9STRA1.770e-3057.95Cytochrome c domain-containing protein n=2 Tax=Alb... [more]
A0A1Y1JZP8_PHOPY3.750e-3056.98Cytochrome c domain-containing protein n=1 Tax=Pho... [more]
A0A0P4ZQJ6_9CRUS3.820e-3061.90Cytochrome c1, heme protein, mitochondrial n=8 Tax... [more]
A0A8B7XQ57_ACAPL3.900e-3060.47cytochrome c1, heme protein, mitochondrial-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127512contigM-pyrifera_M_contig127512:2..271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue4e-21
Seed eggNOG ortholog272952.HpaP812595
Preferred nameCYC1
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
EggNOG free text desc.Cytochrome C1 family
EggNOG OGs3QB6A@4776,COG2857@1,KOG3052@2759
COG Functional cat.C
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size270
Cds size246
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.6072588-UTR-M-pyrifera_M_contig127512:1..251622815789.6072588-UTR-M-pyrifera_M_contig127512:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127512 2..25 +
1692277570.5087974-UTR-M-pyrifera_M_contig127512:1..251692277570.5087974-UTR-M-pyrifera_M_contig127512:1..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127512 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.6170232-CDS-M-pyrifera_M_contig127512:25..2711622815789.6170232-CDS-M-pyrifera_M_contig127512:25..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127512 26..271 +
1692277570.5206895-CDS-M-pyrifera_M_contig127512:25..2711692277570.5206895-CDS-M-pyrifera_M_contig127512:25..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127512 26..271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127512.5546.1prot_M-pyrifera_M_contig127512.5546.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127512 26..271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127512.5546.1

>prot_M-pyrifera_M_contig127512.5546.1 ID=prot_M-pyrifera_M_contig127512.5546.1|Name=mRNA_M-pyrifera_M_contig127512.5546.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MEQALHDEMIDYEDGTPSSISQMAKDVSVFLTWAAEPEHDERKRMGLKAF
FVIALMCIPTLYFKRLKWSVVKTRQLRFTKL*
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mRNA from alignment at M-pyrifera_M_contig127512:2..271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127512.5546.1 ID=mRNA_M-pyrifera_M_contig127512.5546.1|Name=mRNA_M-pyrifera_M_contig127512.5546.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig127512:2..271+ (Macrocystis pyrifera P11B4 male)
TACTTCGCAGGCGGTGCCATTGGAATGGAGCAGGCGCTCCACGACGAGAT
GATTGACTACGAGGACGGCACACCTTCCTCCATCTCCCAGATGGCCAAGG
ACGTCAGCGTATTCCTCACTTGGGCCGCCGAGCCCGAGCACGACGAGCGC
AAGAGGATGGGCCTCAAGGCCTTCTTCGTGATCGCCCTCATGTGCATTCC
CACCCTCTACTTCAAGCGACTCAAGTGGTCCGTCGTGAAGACGAGGCAGC
TGCGCTTCACCAAGCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127512:2..271+

>mRNA_M-pyrifera_M_contig127512.5546.1 ID=mRNA_M-pyrifera_M_contig127512.5546.1|Name=mRNA_M-pyrifera_M_contig127512.5546.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig127512:2..271+ (Macrocystis pyrifera P11B4 male)
ATGGAGCAGGCGCTCCACGACGAGATGATTGACTACGAGGACGGCACACC
TTCCTCCATCTCCCAGATGGCCAAGGACGTCAGCGTATTCCTCACTTGGG
CCGCCGAGCCCGAGCACGACGAGCGCAAGAGGATGGGCCTCAAGGCCTTC
TTCGTGATCGCCCTCATGTGCATTCCCACCCTCTACTTCAAGCGACTCAA
GTGGTCCGTCGTGAAGACGAGGCAGCTGCGCTTCACCAAGCTCTAGATGG
AGCAGGCGCTCCACGACGAGATGATTGACTACGAGGACGGCACACCTTCC
TCCATCTCCCAGATGGCCAAGGACGTCAGCGTATTCCTCACTTGGGCCGC
CGAGCCCGAGCACGACGAGCGCAAGAGGATGGGCCTCAAGGCCTTCTTCG
TGATCGCCCTCATGTGCATTCCCACCCTCTACTTCAAGCGACTCAAGTGG
TCCGTCGTGAAGACGAGGCAGCTGCGCTTCACCAAGCTCTAG
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