mRNA_M-pyrifera_M_contig102554.552.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102554.552.1
Unique NamemRNA_M-pyrifera_M_contig102554.552.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A836L934_9TRYP (Uncharacterized protein n=4 Tax=Leishmaniinae TaxID=1286322 RepID=A0A836L934_9TRYP)

HSP 1 Score: 62.8 bits (151), Expect = 5.830e-11
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLPP 105
            LPPGW+   TADGK Y++DHNTKTTHWS+PP
Sbjct:   12 LPPGWQLSYTADGKPYYIDHNTKTTHWSIPP 42
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BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: E9ACZ0_LEIMA (Uncharacterized protein n=6 Tax=Leishmania TaxID=38568 RepID=E9ACZ0_LEIMA)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-10
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLPP 105
            LPPGW+   TADGK Y++DHNTKTTHWS+PP
Sbjct:   47 LPPGWQLSYTADGKPYYIDHNTKTTHWSIPP 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A088RTQ3_9TRYP (Uncharacterized protein n=4 Tax=Viannia TaxID=37616 RepID=A0A088RTQ3_9TRYP)

HSP 1 Score: 61.6 bits (148), Expect = 1.580e-10
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLPP 105
            LPPGW+   TADGK Y++DHNTKTTHW++PP
Sbjct:   12 LPPGWQLSYTADGKPYYIDHNTKTTHWTIPP 42
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BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A0N0DQR0_9TRYP (Uncharacterized protein n=5 Tax=Leishmaniinae TaxID=1286322 RepID=A0A0N0DQR0_9TRYP)

HSP 1 Score: 61.6 bits (148), Expect = 1.650e-10
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLPP 105
            LPPGW+   TADGK Y++DHNTKTTHW++PP
Sbjct:   13 LPPGWQLSYTADGKPYYIDHNTKTTHWTIPP 43
[Close]
BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A640KIV6_LEITA (Uncharacterized protein n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KIV6_LEITA)

HSP 1 Score: 62.8 bits (151), Expect = 6.820e-10
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLPP 105
            LPPGW+   TADGK Y++DHNTKTTHWS+PP
Sbjct:  192 LPPGWQLSYTADGKPYYIDHNTKTTHWSIPP 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: W6KMP3_9TRYP (Uncharacterized protein n=2 Tax=unclassified Phytomonas TaxID=470182 RepID=W6KMP3_9TRYP)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-9
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 MAMNLPPGWEQKATADGKQYFVDHNTKTTHWSLPPDV 111
            M M LPPGW+   T +G  Y++DHNT+TTHW +PP+V
Sbjct:   21 MPMTLPPGWQVAYTGNGDMYYIDHNTRTTHWQIPPEV 57
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BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A7G2C9X6_9TRYP (WW domain/Zinc finger C-x8-C-x5-C-x3-H type (And similar), putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2C9X6_9TRYP)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-9
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   10 NLPPGWEQKATADGKQYFVDHNTKTTHWSLPPDVRAFVDQQQ 135
            NLP GW+   T DG+ Y+VDHNTKTTHWSLP +V+    +Q+
Sbjct:   45 NLPEGWQLAYTEDGETYYVDHNTKTTHWSLPKEVQEKAKEQK 86
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BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A7S4E7G2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7G2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.090e-9
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLP 102
            LPPGWE+K T DGK Y+VDHNTKTTHW  P
Sbjct:  186 LPPGWEEKKTPDGKPYYVDHNTKTTHWERP 215
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BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: A0A7S4UNP5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4UNP5_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 3.950e-9
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLPPDVRAFVDQQQ 135
            +PPGWE      GK+Y++DHNT+TTHW LPP   A VD  Q
Sbjct:    6 VPPGWELAFMQGGKRYYIDHNTRTTHWELPPQGEAPVDYGQ 46
[Close]
BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Match: W6KFL7_9TRYP (Uncharacterized protein n=2 Tax=unclassified Phytomonas TaxID=470182 RepID=W6KFL7_9TRYP)

HSP 1 Score: 57.0 bits (136), Expect = 1.030e-8
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   13 LPPGWEQKATADGKQYFVDHNTKTTHWSLP 102
            LPPGW+   T DGK Y++DHNTKTTHW++P
Sbjct:   13 LPPGWQLAYTPDGKPYYIDHNTKTTHWTMP 42
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102554.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836L934_9TRYP5.830e-1174.19Uncharacterized protein n=4 Tax=Leishmaniinae TaxI... [more]
E9ACZ0_LEIMA1.180e-1074.19Uncharacterized protein n=6 Tax=Leishmania TaxID=3... [more]
A0A088RTQ3_9TRYP1.580e-1070.97Uncharacterized protein n=4 Tax=Viannia TaxID=3761... [more]
A0A0N0DQR0_9TRYP1.650e-1070.97Uncharacterized protein n=5 Tax=Leishmaniinae TaxI... [more]
A0A640KIV6_LEITA6.820e-1074.19Uncharacterized protein n=1 Tax=Leishmania tarento... [more]
W6KMP3_9TRYP1.010e-956.76Uncharacterized protein n=2 Tax=unclassified Phyto... [more]
A0A7G2C9X6_9TRYP1.800e-957.14WW domain/Zinc finger C-x8-C-x5-C-x3-H type (And s... [more]
A0A7S4E7G2_9STRA2.090e-976.67Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4UNP5_9EUKA3.950e-956.10Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
W6KFL7_9TRYP1.030e-866.67Uncharacterized protein n=2 Tax=unclassified Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102554contigM-pyrifera_M_contig102554:192..413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog5664.LmjF.27.0130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WW domain
EggNOG OGs2DN2F@1,2S667@2759,3XVWM@5653
COG Functional cat.S
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.0608265-CDS-M-pyrifera_M_contig102554:191..4131622815529.0608265-CDS-M-pyrifera_M_contig102554:191..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102554 192..413 -
1692277450.6413562-CDS-M-pyrifera_M_contig102554:191..4131692277450.6413562-CDS-M-pyrifera_M_contig102554:191..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102554 192..413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102554.552.1prot_M-pyrifera_M_contig102554.552.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102554 192..413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102554.552.1

>prot_M-pyrifera_M_contig102554.552.1 ID=prot_M-pyrifera_M_contig102554.552.1|Name=mRNA_M-pyrifera_M_contig102554.552.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MAMNLPPGWEQKATADGKQYFVDHNTKTTHWSLPPDVRAFVDQQQAPVIP
TLPNAAPMPAAAPMAQAHHETPTP
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mRNA from alignment at M-pyrifera_M_contig102554:192..413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102554.552.1 ID=mRNA_M-pyrifera_M_contig102554.552.1|Name=mRNA_M-pyrifera_M_contig102554.552.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig102554:192..413- (Macrocystis pyrifera P11B4 male)
ATGGCCATGAACCTGCCGCCAGGATGGGAGCAGAAGGCGACTGCGGACGG
TAAGCAGTACTTCGTGGACCACAACACCAAGACGACCCACTGGTCGCTCC
CTCCGGACGTGCGCGCCTTCGTCGACCAGCAGCAGGCGCCCGTCATTCCG
ACTCTGCCCAACGCCGCGCCCATGCCTGCTGCCGCGCCCATGGCCCAGGC
CCACCACGAGACGCCCACCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102554:192..413-

>mRNA_M-pyrifera_M_contig102554.552.1 ID=mRNA_M-pyrifera_M_contig102554.552.1|Name=mRNA_M-pyrifera_M_contig102554.552.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig102554:192..413- (Macrocystis pyrifera P11B4 male)
ATGGCCATGAACCTGCCGCCAGGATGGGAGCAGAAGGCGACTGCGGACGG
TAAGCAGTACTTCGTGGACCACAACACCAAGACGACCCACTGGTCGCTCC
CTCCGGACGTGCGCGCCTTCGTCGACCAGCAGCAGGCGCCCGTCATTCCG
ACTCTGCCCAACGCCGCGCCCATGCCTGCTGCCGCGCCCATGGCCCAGGC
CCACCACGAGACGCCCACCCCTATGGCCATGAACCTGCCGCCAGGATGGG
AGCAGAAGGCGACTGCGGACGGTAAGCAGTACTTCGTGGACCACAACACC
AAGACGACCCACTGGTCGCTCCCTCCGGACGTGCGCGCCTTCGTCGACCA
GCAGCAGGCGCCCGTCATTCCGACTCTGCCCAACGCCGCGCCCATGCCTG
CTGCCGCGCCCATGGCCCAGGCCCACCACGAGACGCCCACCCCT
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