mRNA_M-pyrifera_M_contig127324.5502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127324.5502.1
Unique NamemRNA_M-pyrifera_M_contig127324.5502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127324.5502.1 vs. uniprot
Match: F0SNL4_RUBBR (Uncharacterized protein n=1 Tax=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / IAM 15109 / NBRC 103401 / IFAM 1448) TaxID=756272 RepID=F0SNL4_RUBBR)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-7
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:    1 EAQARTETTAAVSHGEGIITNDAKQQGKQVEVIWRIDPMSNVCPICQRMNGKLEEYWSKFFPLGPPAHPRCACDL 225
            EA + T TT A + G G + +D     K  +  W+ +  S VCPIC  +N    + W   FP+GPPAHP C C +
Sbjct:  147 EAISVTATTEARAAG-GEVVSDLVGT-KSPDDYWQTEEDSRVCPICSPLNDAKRDVWEAKFPMGPPAHPHCRCQI 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127324.5502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F0SNL4_RUBBR1.150e-738.67Uncharacterized protein n=1 Tax=Rubinisphaera bras... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127324contigM-pyrifera_M_contig127324:222..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.3402722-CDS-M-pyrifera_M_contig127324:221..4731622815787.3402722-CDS-M-pyrifera_M_contig127324:221..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127324 222..473 -
1692277569.3925562-CDS-M-pyrifera_M_contig127324:221..4731692277569.3925562-CDS-M-pyrifera_M_contig127324:221..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127324 222..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127324.5502.1prot_M-pyrifera_M_contig127324.5502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127324 222..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127324.5502.1

>prot_M-pyrifera_M_contig127324.5502.1 ID=prot_M-pyrifera_M_contig127324.5502.1|Name=mRNA_M-pyrifera_M_contig127324.5502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
EAQARTETTAAVSHGEGIITNDAKQQGKQVEVIWRIDPMSNVCPICQRMN
GKLEEYWSKFFPLGPPAHPRCACDLEVRIDGIVA
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mRNA from alignment at M-pyrifera_M_contig127324:222..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127324.5502.1 ID=mRNA_M-pyrifera_M_contig127324.5502.1|Name=mRNA_M-pyrifera_M_contig127324.5502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig127324:222..473- (Macrocystis pyrifera P11B4 male)
GAAGCCCAGGCACGAACTGAGACCACTGCTGCTGTGAGTCATGGCGAAGG
GATCATCACGAATGATGCAAAGCAGCAGGGTAAACAGGTAGAGGTGATCT
GGCGAATTGATCCGATGTCGAATGTTTGCCCCATCTGTCAGCGGATGAAT
GGCAAGCTCGAGGAATATTGGTCGAAGTTCTTCCCGTTGGGTCCGCCTGC
ACATCCGCGCTGTGCCTGCGATCTGGAAGTCCGAATCGACGGAATTGTTG
CA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127324:222..473-

>mRNA_M-pyrifera_M_contig127324.5502.1 ID=mRNA_M-pyrifera_M_contig127324.5502.1|Name=mRNA_M-pyrifera_M_contig127324.5502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127324:222..473- (Macrocystis pyrifera P11B4 male)
GAAGCCCAGGCACGAACTGAGACCACTGCTGCTGTGAGTCATGGCGAAGG
GATCATCACGAATGATGCAAAGCAGCAGGGTAAACAGGTAGAGGTGATCT
GGCGAATTGATCCGATGTCGAATGTTTGCCCCATCTGTCAGCGGATGAAT
GGCAAGCTCGAGGAATATTGGTCGAAGTTCTTCCCGTTGGGTCCGCCTGC
ACATCCGCGCTGTGCCTGCGATCTGGAAGTCCGAATCGACGGAATTGTTG
CAGAAGCCCAGGCACGAACTGAGACCACTGCTGCTGTGAGTCATGGCGAA
GGGATCATCACGAATGATGCAAAGCAGCAGGGTAAACAGGTAGAGGTGAT
CTGGCGAATTGATCCGATGTCGAATGTTTGCCCCATCTGTCAGCGGATGA
ATGGCAAGCTCGAGGAATATTGGTCGAAGTTCTTCCCGTTGGGTCCGCCT
GCACATCCGCGCTGTGCCTGCGATCTGGAAGTCCGAATCGACGGAATTGT
TGCA
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