mRNA_M-pyrifera_M_contig100229.55.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100229.55.1
Unique NamemRNA_M-pyrifera_M_contig100229.55.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100229.55.1 vs. uniprot
Match: A0A433TMW2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433TMW2_ELYCH)

HSP 1 Score: 60.5 bits (145), Expect = 1.640e-9
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   34 ELRWAISQLELGLKREDCDREQAREARRVLIVLRNPEARLIKKRFTLKNTFGDVKAAMR 210
            ELRW ISQLELGL+R+D D  QA E  ++L +LR+P+A L+KKR  +++  GD +  M+
Sbjct:   16 ELRWCISQLELGLQRQDPDSRQAMETIKILKILRSPKAPLVKKRQAMRSALGDYRKKMK 74
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BLAST of mRNA_M-pyrifera_M_contig100229.55.1 vs. uniprot
Match: UPI000719CEDE (UPF0488 protein C8orf33 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CEDE)

HSP 1 Score: 57.0 bits (136), Expect = 3.270e-8
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   28 EAELRWAISQLELGLKREDCDREQAREARRVLIVLRNPEARLIKKRFTLKNTFGDVKAAM 207
            E EL W I QLELGL R+  D +QARE +R+L +L +P+A L+KKR  +++TF D +  M
Sbjct:   13 ERELIWCIEQLELGLSRQKPDSKQAREGKRILKMLSDPKAPLVKKRQAMRSTFCDYRKKM 72
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100229.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A433TMW2_ELYCH1.640e-950.85Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
UPI000719CEDE3.270e-850.00UPF0488 protein C8orf33 homolog n=1 Tax=Priapulus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100229contigM-pyrifera_M_contig100229:194..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.7101762-CDS-M-pyrifera_M_contig100229:193..3851622815497.7101762-CDS-M-pyrifera_M_contig100229:193..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100229 194..385 -
1692277438.6490192-CDS-M-pyrifera_M_contig100229:193..3851692277438.6490192-CDS-M-pyrifera_M_contig100229:193..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100229 194..385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.7214684-UTR-M-pyrifera_M_contig100229:385..4061622815497.7214684-UTR-M-pyrifera_M_contig100229:385..406Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100229 386..406 -
1692277438.6607878-UTR-M-pyrifera_M_contig100229:385..4061692277438.6607878-UTR-M-pyrifera_M_contig100229:385..406Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100229 386..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100229.55.1prot_M-pyrifera_M_contig100229.55.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100229 194..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100229.55.1

>prot_M-pyrifera_M_contig100229.55.1 ID=prot_M-pyrifera_M_contig100229.55.1|Name=mRNA_M-pyrifera_M_contig100229.55.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MVEAELRWAISQLELGLKREDCDREQAREARRVLIVLRNPEARLIKKRFT
LKNTFGDVKAAMRK
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mRNA from alignment at M-pyrifera_M_contig100229:194..406-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100229.55.1 ID=mRNA_M-pyrifera_M_contig100229.55.1|Name=mRNA_M-pyrifera_M_contig100229.55.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig100229:194..406- (Macrocystis pyrifera P11B4 male)
CCAGAAGTGTCCAAAGAGGAGATGGTAGAAGCAGAACTGCGATGGGCCAT
TTCACAGTTGGAATTGGGATTGAAACGGGAGGATTGTGACAGAGAACAAG
CGAGAGAAGCAAGGAGAGTCCTAATAGTGCTTCGTAATCCAGAGGCACGC
TTGATCAAGAAACGATTCACCCTTAAAAATACATTTGGAGATGTCAAGGC
TGCGATGCGAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100229:194..406-

>mRNA_M-pyrifera_M_contig100229.55.1 ID=mRNA_M-pyrifera_M_contig100229.55.1|Name=mRNA_M-pyrifera_M_contig100229.55.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig100229:194..406- (Macrocystis pyrifera P11B4 male)
ATGGTAGAAGCAGAACTGCGATGGGCCATTTCACAGTTGGAATTGGGATT
GAAACGGGAGGATTGTGACAGAGAACAAGCGAGAGAAGCAAGGAGAGTCC
TAATAGTGCTTCGTAATCCAGAGGCACGCTTGATCAAGAAACGATTCACC
CTTAAAAATACATTTGGAGATGTCAAGGCTGCGATGCGAAAGATGGTAGA
AGCAGAACTGCGATGGGCCATTTCACAGTTGGAATTGGGATTGAAACGGG
AGGATTGTGACAGAGAACAAGCGAGAGAAGCAAGGAGAGTCCTAATAGTG
CTTCGTAATCCAGAGGCACGCTTGATCAAGAAACGATTCACCCTTAAAAA
TACATTTGGAGATGTCAAGGCTGCGATGCGAAAG
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