mRNA_M-pyrifera_M_contig127290.5493.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127290.5493.1
Unique NamemRNA_M-pyrifera_M_contig127290.5493.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: A0A6P8YJ38_THRPL (protein CutA homolog n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YJ38_THRPL)

HSP 1 Score: 131 bits (330), Expect = 4.140e-37
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   25 LVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIA 312
            + YVTAPS EVAK LAR +V  +LAACVNIVP VTSVYEWEG++ ED+E L+MIKTR   +A +  LV+ +HPYD PEVISVPIE GSE YL W++
Sbjct:   43 IAYVTAPSEEVAKKLARSIVQQKLAACVNIVPKVTSVYEWEGKLNEDSEVLMMIKTRTSLIADVVQLVKNDHPYDCPEVISVPIESGSEDYLKWVS 138          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: UPI000C204DF4 (protein CutA homolog n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C204DF4)

HSP 1 Score: 127 bits (320), Expect = 1.330e-35
Identity = 59/93 (63.44%), Postives = 76/93 (81.72%), Query Frame = 1
Query:   31 YVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWI 309
            YVTAP+ EVAK +A  LV+H+LAACVNI+P +TSVYEWEG+IEED+E L+MIKTR+  +  L+  V+  HPY V EVIS+PIEGG+++YL WI
Sbjct:   43 YVTAPNEEVAKKIAHGLVSHKLAACVNIIPKITSVYEWEGKIEEDSEVLMMIKTRSTKIPELTEFVKSNHPYTVCEVISIPIEGGNQQYLNWI 135          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: UPI000614C902 (protein CutA homolog n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000614C902)

HSP 1 Score: 123 bits (309), Expect = 6.210e-34
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   25 LVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIA 312
            +VYVT P+ EVAK LA  LV  +LAACVNI+P +TSVYEW+  I ED E LLMIKTR D V AL+  V+E HPY+V EVIS+PI+ G+EKYL WI+
Sbjct:   39 VVYVTVPTQEVAKKLAHGLVKDKLAACVNIIPGLTSVYEWKNEINEDNELLLMIKTRTDTVNALTKYVKENHPYEVCEVISLPIQNGNEKYLQWIS 134          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: A0A1I8AQ40_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AQ40_9BILA)

HSP 1 Score: 123 bits (308), Expect = 1.320e-33
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   25 LVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIAFETSKVPS 336
            +VYVT PS EVA+ ++R +V  +LAACVNIVP VTS+YEWE +IEE +E LL+IKTR + +  L   V   HPYDVPE IS+PIE GSE YL W+  +T   PS
Sbjct:   47 VVYVTVPSMEVARNISRSIVGGKLAACVNIVPGVTSIYEWENKIEESSELLLIIKTREEAIEELKKEVHRLHPYDVPEFISLPIEEGSEPYLKWVKDQTQFSPS 150          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: A0A1X7V6M9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V6M9_AMPQE)

HSP 1 Score: 122 bits (307), Expect = 1.720e-33
Identity = 53/102 (51.96%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   16 NAVLVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIAFET 321
            + ++ +VT PS EVA+ L+R ++  RLAACVNI+P +TS+YEWEG ++ED+E L+++KT  D +++L+S +E+ HPYDVPEVIS  I  GS+KYL W+   T
Sbjct:   47 SCLVTFVTCPSMEVARDLSRNILRSRLAACVNIIPQITSIYEWEGELQEDSEFLMVVKTSKDQISSLTSFIEQNHPYDVPEVISTEINHGSKKYLDWVMSST 148          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: A0A1I8B6P6_MELHA (Uncharacterized protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8B6P6_MELHA)

HSP 1 Score: 121 bits (304), Expect = 1.870e-33
Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 1
Query:   25 LVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIAFET 321
            +VYVT PSAE+ K +A++++  RLAACVNI+P +TS+YEW+G++EE+ E LL+IKT +D +  L  +V + HPYDVPE I +PIE GSE YL WI  +T
Sbjct:   12 VVYVTVPSAEIGKNIAKEIIQKRLAACVNIIPHLTSIYEWKGKVEEENESLLIIKTESDRLIQLEEIVTKIHPYDVPEFIVLPIEKGSEPYLKWIYEQT 110          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: A0A4Z2F0H5_9TELE (Protein CutA n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2F0H5_9TELE)

HSP 1 Score: 121 bits (304), Expect = 2.230e-33
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   31 YVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWI 309
            +VT P+A VAK LAR +V  +LAACVNI+P++TSVYEW+G+IEED+E LLMIKTR+  V AL+  V   HPY+V EVIS+PIE G+  YL WI
Sbjct:   29 FVTCPNASVAKELARAIVERKLAACVNIIPAITSVYEWQGKIEEDSEVLLMIKTRSSKVPALAEYVRSHHPYEVAEVISLPIEQGNPPYLKWI 121          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: UPI001C9B30C3 (protein CutA homolog n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B30C3)

HSP 1 Score: 122 bits (305), Expect = 2.910e-33
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   25 LVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWI 309
            +VYVT P+ E AK +A  LV ++LAACVNI+PS+TSVYEW+ +I ED+E L+MIKTR D V +L+  V+E HPY+V EVIS+PI+ G+EKYL WI
Sbjct:   39 VVYVTVPTQEDAKTIAHGLVKNKLAACVNIIPSITSVYEWKNKINEDSELLMMIKTRTDTVDSLTKYVKENHPYEVCEVISLPIQNGNEKYLQWI 133          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: A0A0L7R8S8_9HYME (Protein CutA like protein n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7R8S8_9HYME)

HSP 1 Score: 121 bits (304), Expect = 3.780e-33
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   31 YVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIA 312
            YVT P+ +VAK LA  LV ++LAACVNI+P +TSVYEW+  I ED+E LLMIKTR D V AL+  V E HPY+V EVIS+PI+ GSEKYL WI+
Sbjct:   41 YVTVPTEDVAKKLAHGLVKNKLAACVNIIPQLTSVYEWKNEINEDSELLLMIKTRTDTVDALTKYVMENHPYEVCEVISLPIKNGSEKYLKWIS 134          
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Match: UPI0006C9B515 (protein CutA homolog n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9B515)

HSP 1 Score: 121 bits (304), Expect = 4.370e-33
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   31 YVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEGRIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYLAWIA 312
            YVT P+ EVAK LA  LV+ +LAACVNI+P +TSVYEW+  I ED E LLMIKTR D V AL+  V+E HPY+V EVIS+PI+ G+++YL+WI+
Sbjct:   40 YVTVPTDEVAKKLAHGLVSKKLAACVNIIPKITSVYEWKNEINEDNELLLMIKTRTDTVDALTKFVKENHPYEVCEVISLPIQNGNDQYLSWIS 133          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127290.5493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P8YJ38_THRPL4.140e-3765.63protein CutA homolog n=1 Tax=Thrips palmi TaxID=16... [more]
UPI000C204DF41.330e-3563.44protein CutA homolog n=1 Tax=Onthophagus taurus Ta... [more]
UPI000614C9026.210e-3463.54protein CutA homolog n=1 Tax=Megachile rotundata T... [more]
A0A1I8AQ40_9BILA1.320e-3357.69Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A1X7V6M9_AMPQE1.720e-3351.96Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A1I8B6P6_MELHA1.870e-3355.56Uncharacterized protein n=1 Tax=Meloidogyne hapla ... [more]
A0A4Z2F0H5_9TELE2.230e-3362.37Protein CutA n=1 Tax=Liparis tanakae TaxID=230148 ... [more]
UPI001C9B30C32.910e-3361.05protein CutA homolog n=1 Tax=Colletes gigas TaxID=... [more]
A0A0L7R8S8_9HYME3.780e-3363.83Protein CutA like protein n=1 Tax=Habropoda labori... [more]
UPI0006C9B5154.370e-3361.70protein CutA homolog n=1 Tax=Trichogramma pretiosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127290contigM-pyrifera_M_contig127290:11..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score120.2
Seed ortholog evalue6.4e-25
Seed eggNOG ortholog69293.ENSGACP00000002401
Preferred nameCUTA
KEGG koko:K03926
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0008104,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019899,GO:0022607,GO:0033036,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0046872,GO:0046914,GO:0051179,GO:0051259,GO:0051260,GO:0065003,GO:0071840
EggNOG free text desc.cutA divalent cation tolerance homolog (E. coli)
EggNOG OGs3A1S2@33154,3BQH3@33208,3D77M@33213,481RA@7711,49BFJ@7742,4A3AM@7898,COG1324@1,KOG3338@2759
COG Functional cat.P
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size339
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.6760936-CDS-M-pyrifera_M_contig127290:10..3491622815786.6760936-CDS-M-pyrifera_M_contig127290:10..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127290 11..349 +
1692277568.9841049-CDS-M-pyrifera_M_contig127290:10..3491692277568.9841049-CDS-M-pyrifera_M_contig127290:10..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127290 11..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127290.5493.1prot_M-pyrifera_M_contig127290.5493.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127290 11..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127290.5493.1

>prot_M-pyrifera_M_contig127290.5493.1 ID=prot_M-pyrifera_M_contig127290.5493.1|Name=mRNA_M-pyrifera_M_contig127290.5493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MQRLANAVLVYVTAPSAEVAKGLARQLVTHRLAACVNIVPSVTSVYEWEG
RIEEDTECLLMIKTRNDPVAALSSLVEEEHPYDVPEVISVPIEGGSEKYL
AWIAFETSKVPS*
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mRNA from alignment at M-pyrifera_M_contig127290:11..349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127290.5493.1 ID=mRNA_M-pyrifera_M_contig127290.5493.1|Name=mRNA_M-pyrifera_M_contig127290.5493.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig127290:11..349+ (Macrocystis pyrifera P11B4 male)
ATGCAGCGGCTGGCGAACGCTGTGTTGGTCTACGTGACGGCTCCGAGTGC AGAGGTTGCGAAGGGGCTGGCAAGACAGTTGGTCACACACCGCCTTGCAG CCTGTGTGAACATAGTACCTAGCGTGACTTCGGTATATGAGTGGGAGGGC AGGATTGAGGAGGACACTGAGTGTTTGCTGATGATCAAGACGAGGAACGA CCCCGTGGCAGCCCTGTCGAGCTTGGTGGAGGAGGAGCACCCGTACGACG TGCCTGAGGTAATCTCAGTGCCAATTGAGGGTGGCAGTGAGAAGTACTTG GCATGGATTGCTTTTGAGACTTCCAAGGTTCCTTCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127290:11..349+

>mRNA_M-pyrifera_M_contig127290.5493.1 ID=mRNA_M-pyrifera_M_contig127290.5493.1|Name=mRNA_M-pyrifera_M_contig127290.5493.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig127290:11..349+ (Macrocystis pyrifera P11B4 male)
ATGCAGCGGCTGGCGAACGCTGTGTTGGTCTACGTGACGGCTCCGAGTGC
AGAGGTTGCGAAGGGGCTGGCAAGACAGTTGGTCACACACCGCCTTGCAG
CCTGTGTGAACATAGTACCTAGCGTGACTTCGGTATATGAGTGGGAGGGC
AGGATTGAGGAGGACACTGAGTGTTTGCTGATGATCAAGACGAGGAACGA
CCCCGTGGCAGCCCTGTCGAGCTTGGTGGAGGAGGAGCACCCGTACGACG
TGCCTGAGGTAATCTCAGTGCCAATTGAGGGTGGCAGTGAGAAGTACTTG
GCATGGATTGCTTTTGAGACTTCCAAGGTTCCTTCATGAATGCAGCGGCT
GGCGAACGCTGTGTTGGTCTACGTGACGGCTCCGAGTGCAGAGGTTGCGA
AGGGGCTGGCAAGACAGTTGGTCACACACCGCCTTGCAGCCTGTGTGAAC
ATAGTACCTAGCGTGACTTCGGTATATGAGTGGGAGGGCAGGATTGAGGA
GGACACTGAGTGTTTGCTGATGATCAAGACGAGGAACGACCCCGTGGCAG
CCCTGTCGAGCTTGGTGGAGGAGGAGCACCCGTACGACGTGCCTGAGGTA
ATCTCAGTGCCAATTGAGGGTGGCAGTGAGAAGTACTTGGCATGGATTGC
TTTTGAGACTTCCAAGGTTCCTTCATGA
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