mRNA_M-pyrifera_M_contig127283.5491.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127283.5491.1
Unique NamemRNA_M-pyrifera_M_contig127283.5491.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127283.5491.1 vs. uniprot
Match: UPI002005D913 (hypothetical protein n=1 Tax=Aciditerrimonas ferrireducens TaxID=667306 RepID=UPI002005D913)

HSP 1 Score: 62.0 bits (149), Expect = 1.410e-10
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   37 RLGRVVDYQSDRGLGTLAATSASGHEQTY--PFHCTAIADGGREIAEGTPVSFLVGPVGPGIWEAIEVRPTQP 249
            RLG+V+ Y S RGLG L        EQT   PFHCTA+ADGGRE+A GTPV   + P   G  EA+ VR   P
Sbjct:   34 RLGQVLAYDSARGLGELGFQVT---EQTVVVPFHCTALADGGREVAAGTPVVCELRPGHRGRLEAVGVRVLGP 103
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BLAST of mRNA_M-pyrifera_M_contig127283.5491.1 vs. uniprot
Match: A0A7V9SQ66_9ACTN (Cold shock domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9SQ66_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 7.610e-9
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:   43 GRVVDYQSDRGLGTLAATSASGHEQTYPFHCTAIADGGREIAEGTPVSFLVGPVGPGIWEAIEV 234
            G V +Y S  GLG + A   +    TYPFHCTAIADG REI  G  V+F +     G +EA E+
Sbjct:   12 GTVTEYDSPAGLGLVIADGGA----TYPFHCTAIADGSREIEVGRSVTFTIAAGHHGRFEATEI 71
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BLAST of mRNA_M-pyrifera_M_contig127283.5491.1 vs. uniprot
Match: UPI0020176457 (cold shock domain-containing protein n=2 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI0020176457)

HSP 1 Score: 57.4 bits (137), Expect = 8.090e-9
Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   43 GRVVDYQSDRGLGTLAATSASGHEQTYPFHCTAIADGGREIAEGTPVSFLVGPVGPGIWEAIEVRPTQ 246
            G V  +   RG+G +     +       FHCTAIADG R IAEGT V F V P   G WEA ++RP+Q
Sbjct:   38 GTVRSFDDPRGIGVVLGPDGT----ELAFHCTAIADGTRTIAEGTDVVFRVVPGRRGRWEAADLRPSQ 101
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BLAST of mRNA_M-pyrifera_M_contig127283.5491.1 vs. uniprot
Match: A0A7K0WSJ2_9ACTN (CSD domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0WSJ2_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 1.000e-6
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:    1 MAVRTPVDEFVIRLGRVVDYQSDRGLGTLAATSASGHEQTYPFHCTAIADGGREIAEGTPVSFLVGPVGPGIWEAIEVRP 240
            MA RT      I+ G V  +    GLGT+     +    T+ FHCTA+ADG R IA GT VSF++     G  EA+ V P
Sbjct:    3 MATRT------IQSGTVQSFDQAVGLGTVVDAQGT----TFNFHCTAVADGSRNIAVGTAVSFVLRQGTLGRVEAVRVTP 72
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BLAST of mRNA_M-pyrifera_M_contig127283.5491.1 vs. uniprot
Match: A0A7V9J5C1_9ACTN (Cold shock domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9J5C1_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 1.330e-6
Identity = 28/66 (42.42%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:   43 GRVVDYQSDRGLGTLAATSASGHEQTYPFHCTAIADGGREIAEGTPVSFLVGPVGPGIWEAIEVRP 240
            G VV +    G G +      G  +   FHCTA+ADG R IAEGT V + + P   G WEA  +RP
Sbjct:    6 GVVVSFDERAGWGRVRG----GDGEELFFHCTAVADGSRTIAEGTEVDYEIVPGHRGRWEAWSIRP 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127283.5491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI002005D9131.410e-1052.05hypothetical protein n=1 Tax=Aciditerrimonas ferri... [more]
A0A7V9SQ66_9ACTN7.610e-946.88Cold shock domain-containing protein n=1 Tax=Actin... [more]
UPI00201764578.090e-945.59cold shock domain-containing protein n=2 Tax=Rhabd... [more]
A0A7K0WSJ2_9ACTN1.000e-641.25CSD domain-containing protein n=2 Tax=root TaxID=1... [more]
A0A7V9J5C1_9ACTN1.330e-642.42Cold shock domain-containing protein n=1 Tax=Acidi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127283contigM-pyrifera_M_contig127283:181..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.596274-CDS-M-pyrifera_M_contig127283:180..4321622815786.596274-CDS-M-pyrifera_M_contig127283:180..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127283 181..432 -
1692277568.957322-CDS-M-pyrifera_M_contig127283:180..4321692277568.957322-CDS-M-pyrifera_M_contig127283:180..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127283 181..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127283.5491.1prot_M-pyrifera_M_contig127283.5491.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127283 181..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127283.5491.1

>prot_M-pyrifera_M_contig127283.5491.1 ID=prot_M-pyrifera_M_contig127283.5491.1|Name=mRNA_M-pyrifera_M_contig127283.5491.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MAVRTPVDEFVIRLGRVVDYQSDRGLGTLAATSASGHEQTYPFHCTAIAD
GGREIAEGTPVSFLVGPVGPGIWEAIEVRPTQP*
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mRNA from alignment at M-pyrifera_M_contig127283:181..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127283.5491.1 ID=mRNA_M-pyrifera_M_contig127283.5491.1|Name=mRNA_M-pyrifera_M_contig127283.5491.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig127283:181..432- (Macrocystis pyrifera P11B4 male)
ATGGCCGTGCGAACACCGGTCGACGAGTTCGTGATCCGGCTGGGTCGAGT
CGTCGACTACCAGTCCGATCGAGGGTTGGGAACGCTCGCTGCGACCTCGG
CTTCTGGGCACGAGCAGACGTATCCGTTCCACTGCACCGCGATCGCCGAC
GGCGGCCGAGAGATCGCGGAGGGAACGCCGGTGTCCTTCCTGGTCGGACC
GGTCGGGCCTGGCATCTGGGAAGCCATCGAGGTTCGCCCGACCCAACCCT
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127283:181..432-

>mRNA_M-pyrifera_M_contig127283.5491.1 ID=mRNA_M-pyrifera_M_contig127283.5491.1|Name=mRNA_M-pyrifera_M_contig127283.5491.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127283:181..432- (Macrocystis pyrifera P11B4 male)
ATGGCCGTGCGAACACCGGTCGACGAGTTCGTGATCCGGCTGGGTCGAGT
CGTCGACTACCAGTCCGATCGAGGGTTGGGAACGCTCGCTGCGACCTCGG
CTTCTGGGCACGAGCAGACGTATCCGTTCCACTGCACCGCGATCGCCGAC
GGCGGCCGAGAGATCGCGGAGGGAACGCCGGTGTCCTTCCTGGTCGGACC
GGTCGGGCCTGGCATCTGGGAAGCCATCGAGGTTCGCCCGACCCAACCCT
GAATGGCCGTGCGAACACCGGTCGACGAGTTCGTGATCCGGCTGGGTCGA
GTCGTCGACTACCAGTCCGATCGAGGGTTGGGAACGCTCGCTGCGACCTC
GGCTTCTGGGCACGAGCAGACGTATCCGTTCCACTGCACCGCGATCGCCG
ACGGCGGCCGAGAGATCGCGGAGGGAACGCCGGTGTCCTTCCTGGTCGGA
CCGGTCGGGCCTGGCATCTGGGAAGCCATCGAGGTTCGCCCGACCCAACC
CTGA
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