mRNA_M-pyrifera_M_contig102548.549.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102548.549.1
Unique NamemRNA_M-pyrifera_M_contig102548.549.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: W4G6I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G6I6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.550e-30
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   13 PAVVV-RPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTS--MTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGAKR 393
            PAV+  RPK  TCY+CGRDYG +SF IH+ QCK++++A+E  KP                     G   +S  +T E+L+A N AA   +  K +  CPYCGRTF PE+LAIHNRSCTA+ PAK +G  R
Sbjct:    3 PAVLAKRPKVRTCYVCGRDYGFSSFEIHLKQCKQMWIAQEELKPLRERRPVPEPPPTLLVATEGGGDAPSSYDLTPEQLEAQNRAAQQAFENKVMEKCPYCGRTFNPERLAIHNRSCTAEHPAKAIGQAR 132          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0A6G0WSX5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSX5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.550e-30
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   16 AVVVRPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGAKR 393
            AV  +PK  TCY+CGR+YG +SF IH+ QCK+L++A+E +KP                      +    +T EEL+A N AA   +  K +  C +CGRTF PE+LAIHNRSCTAD PAK VG  R
Sbjct:    3 AVAKKPKVRTCYVCGREYGLSSFEIHLKQCKQLWIAQEEKKP----LKERKPVPEPPTVLNDSDKSSYDLTPEELEAQNRAAAQAFEQKVMEKCQFCGRTFNPERLAIHNRSCTADNPAKAVGQAR 124          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0A1V9Z3G1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3G1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.500e-30
Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   13 PAVVVRPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGAKR 393
            PA V RPK   CY+CGR+YG +S  IHV QCK L++A+E +KP                    E   L  ++ +EL+A+N AA   +  K +  C +CGRTF PE+LAIHNRSCTA+KPA+ VG  R
Sbjct:   47 PATVRRPKVKLCYVCGREYGLSSIEIHVKQCKLLWIAQEEKKPPRERRPVPEPPHEVAL----EANVLYQLSPDELEALNRAAAKAFEDKVMEKCAFCGRTFNPERLAIHNRSCTAEKPARAVGTAR 169          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0A024TQV1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQV1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.440e-29
Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   28 RPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGAKR 393
            RPK  TCY+CGRDYG +S+ IH+ QCK+L++A+E  KP                    +      +T E+L+A N AA   +  K +  C +CGRTF PE+LAIHNRSCTA+ PAK +G  R
Sbjct:    9 RPKVRTCYVCGRDYGLSSYEIHLKQCKQLWIAQEELKPLKERRPVPEPPHALVSSECGDVPSAYDLTPEQLEAQNRAAQQAFENKVMEKCAFCGRTFNPERLAIHNRSCTAEHPAKAIGQAR 130          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0A1W0A3F6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3F6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.100e-28
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   31 PKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGAKR 393
            PK   CY+CGR+YG +SF IH+ QCK+LF+A+E RKP                    +   L  ++ EEL+A N AA  T+  K +  C +CGRTF PE+LAIHNRSCTA++PA+ VG  R
Sbjct:   53 PKVRVCYVCGREYGLSSFEIHLKQCKQLFIAQEERKP--LRERKPLPEPPNELVEITDATVLYKLSPEELEAQNRAAAKTFENKVMEKCAFCGRTFNPERLAIHNRSCTAERPARAVGTAR 171          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: T0R1F0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1F0_SAPDV)

HSP 1 Score: 112 bits (279), Expect = 4.440e-27
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   28 RPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGAKR 393
            RPK   CY+CGR+YG +SF IH+ QCK L++A+E +KP                    E   L  ++ +EL+A N AA   +  K +  C YCGRTF PE+LAIHNRSCTA++PA+ VG  R
Sbjct:   46 RPKVRLCYVCGREYGLSSFEIHLKQCKLLWIAQEEKKP----LRERRPVPEPPQELPIEANVLYQLSPDELEAQNRAAARAFEEKVMEKCAYCGRTFNPERLAIHNRSCTAERPARAVGTAR 163          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0D772_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0D772_PARTE)

HSP 1 Score: 110 bits (276), Expect = 1.060e-25
Identity = 54/121 (44.63%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   25 VRPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGA 387
            VRPK++ CYICGR+YGT S GIH+ QCK++F+ +E +KPK                   E      +T E++ A N  AF+ YN +ALV+C  CGRTF PE L  H ++CTAD P K + A
Sbjct:  159 VRPKTLVCYICGREYGTKSLGIHIPQCKEMFIVQEMKKPKAERRNPPTTPRGLWDLLNKE-----DITMEDIIAYNNGAFNKYNKEALVACKNCGRTFKPEALEHHIKACTADNPFKALDA 274          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0A0G4FKR9_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FKR9_VITBC)

HSP 1 Score: 108 bits (271), Expect = 4.770e-25
Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   28 RPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAK 375
             P SVTCYICGR +GTAS  IH+ QC K +  +EA KPK                    G D  +MTAEE +A N AA + +NT+ LV+CP CGRTFLP++L IH RSC A  PAK
Sbjct:  164 EPPSVTCYICGRKFGTASISIHLPQCAKKWEQQEALKPKHERRPVPKPPEAEKAI----GAD--AMTAEEREAYNVAAQEKFNTEGLVACPNCGRTFLPDRLEIHLRSCKASNPAK 273          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0A813BPQ5_9DINO (ZNF474 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BPQ5_9DINO)

HSP 1 Score: 103 bits (258), Expect = 5.510e-24
Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   31 PKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKP-----KXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAKRVGA 387
            P+SVTCYICGR +GTAS  IH+ QCK  F+ ++   P     K                        + MTA +L+A+N AA+DTYN++A+  C  CGRTFLP++L IH RSC     AK V A
Sbjct:   90 PRSVTCYICGRGFGTASIDIHIPQCKTKFIQQQKLLPPGQRKKLPQPPQLATAGAAALDASGAPVKASEMTAAQLEALNQAAYDTYNSEAMSKCDVCGRTFLPDRLIIHQRSCKPGNAAKSVAA 213          
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Match: A0DJP9_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DJP9_PARTE)

HSP 1 Score: 105 bits (261), Expect = 1.110e-23
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   28 RPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKXXXXXXXXXXXXXXXXXXXEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCPYCGRTFLPEKLAIHNRSCTADKPAK 375
            RPK++ CYICGR+YG+ S GIH+ QCK++F+ +E +KPK                   E      +T E++ A N  AF+ YN +ALV+C  CGRTF PE L  H ++CTA+ P K
Sbjct:  160 RPKTLVCYICGREYGSKSLGIHIPQCKEMFMVQEMKKPKGERRNPPTTPRGLWDLLNKE-----EITMEDIMAYNNGAFNKYNKEALVACKNCGRTFKPEALEHHIKACTAENPFK 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102548.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4G6I6_9STRA2.550e-3046.92Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WSX5_9STRA4.550e-3046.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z3G1_9STRA5.500e-3045.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TQV1_9STRA7.440e-2944.26Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1W0A3F6_9STRA2.100e-2846.28Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0R1F0_SAPDV4.440e-2745.08Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0D772_PARTE1.060e-2544.63Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A0G4FKR9_VITBC4.770e-2550.00Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A813BPQ5_9DINO5.510e-2442.74ZNF474 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0DJP9_PARTE1.110e-2343.10Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102548contigM-pyrifera_M_contig102548:35..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue5.3e-23
Seed eggNOG ortholog157072.XP_008875488.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc-finger of a C2HC-type
EggNOG OGs28PRY@1,2QWEF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.912739-CDS-M-pyrifera_M_contig102548:34..4271622815528.912739-CDS-M-pyrifera_M_contig102548:34..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102548 35..427 +
1692277450.589371-CDS-M-pyrifera_M_contig102548:34..4271692277450.589371-CDS-M-pyrifera_M_contig102548:34..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102548 35..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102548.549.1prot_M-pyrifera_M_contig102548.549.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102548 35..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102548.549.1

>prot_M-pyrifera_M_contig102548.549.1 ID=prot_M-pyrifera_M_contig102548.549.1|Name=mRNA_M-pyrifera_M_contig102548.549.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MAAAPAVVVRPKSVTCYICGRDYGTASFGIHVDQCKKLFLAREARKPKKE
RRKVPKPPTAAGAAAAAEGRDLTSMTAEELDAMNAAAFDTYNTKALVSCP
YCGRTFLPEKLAIHNRSCTADKPAKRVGAKR
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mRNA from alignment at M-pyrifera_M_contig102548:35..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102548.549.1 ID=mRNA_M-pyrifera_M_contig102548.549.1|Name=mRNA_M-pyrifera_M_contig102548.549.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig102548:35..427+ (Macrocystis pyrifera P11B4 male)
ATGGCTGCTGCGCCTGCGGTGGTTGTGAGGCCCAAGTCGGTGACGTGCTA CATCTGCGGTCGTGATTACGGGACTGCATCGTTCGGTATCCATGTGGATC AGTGCAAGAAGCTGTTTCTGGCTCGTGAAGCACGGAAACCCAAGAAGGAG AGGAGGAAAGTCCCGAAACCCCCCACTGCTGCCGGTGCGGCTGCTGCAGC TGAAGGCAGGGATCTAACCTCCATGACAGCGGAGGAGCTGGACGCGATGA ACGCTGCTGCGTTCGACACGTACAACACGAAAGCGCTCGTGTCGTGTCCA TACTGTGGCCGTACCTTCCTGCCGGAGAAGCTTGCTATTCACAACCGATC GTGTACAGCAGACAAGCCAGCAAAGCGCGTCGGCGCCAAGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102548:35..427+

>mRNA_M-pyrifera_M_contig102548.549.1 ID=mRNA_M-pyrifera_M_contig102548.549.1|Name=mRNA_M-pyrifera_M_contig102548.549.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig102548:35..427+ (Macrocystis pyrifera P11B4 male)
ATGGCTGCTGCGCCTGCGGTGGTTGTGAGGCCCAAGTCGGTGACGTGCTA
CATCTGCGGTCGTGATTACGGGACTGCATCGTTCGGTATCCATGTGGATC
AGTGCAAGAAGCTGTTTCTGGCTCGTGAAGCACGGAAACCCAAGAAGGAG
AGGAGGAAAGTCCCGAAACCCCCCACTGCTGCCGGTGCGGCTGCTGCAGC
TGAAGGCAGGGATCTAACCTCCATGACAGCGGAGGAGCTGGACGCGATGA
ACGCTGCTGCGTTCGACACGTACAACACGAAAGCGCTCGTGTCGTGTCCA
TACTGTGGCCGTACCTTCCTGCCGGAGAAGCTTGCTATTCACAACCGATC
GTGTACAGCAGACAAGCCAGCAAAGCGCGTCGGCGCCAAGCGGATGGCTG
CTGCGCCTGCGGTGGTTGTGAGGCCCAAGTCGGTGACGTGCTACATCTGC
GGTCGTGATTACGGGACTGCATCGTTCGGTATCCATGTGGATCAGTGCAA
GAAGCTGTTTCTGGCTCGTGAAGCACGGAAACCCAAGAAGGAGAGGAGGA
AAGTCCCGAAACCCCCCACTGCTGCCGGTGCGGCTGCTGCAGCTGAAGGC
AGGGATCTAACCTCCATGACAGCGGAGGAGCTGGACGCGATGAACGCTGC
TGCGTTCGACACGTACAACACGAAAGCGCTCGTGTCGTGTCCATACTGTG
GCCGTACCTTCCTGCCGGAGAAGCTTGCTATTCACAACCGATCGTGTACA
GCAGACAAGCCAGCAAAGCGCGTCGGCGCCAAGCGG
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