mRNA_M-pyrifera_M_contig127262.5488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127262.5488.1
Unique NamemRNA_M-pyrifera_M_contig127262.5488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: UPI000644E171 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E171)

HSP 1 Score: 102 bits (255), Expect = 6.150e-23
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   16 IEQPYDVQVSNR----------EEWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLLSC-SSLGGDVDGGLLVDAEHQQSIVTGGF 390
            IEQP+ V+ +            ++W  +  EY   G+ + ADES+C  +D+  L  +A  VN+KLEKTGG+R AL+ + +A   GM VWIG MV S L S+ +A LL+  S  GGD+DGGLLVD + Q  + TGGF
Sbjct:  267 IEQPFPVETTKGNQSIKDDPVIQQWVHIKEEYHRHGLVIFADESVCNADDIDNLIDIAHGVNIKLEKTGGVREALIAITKARDLGMKVWIGSMVGSSLNSNAAAHLLAILSDYGGDLDGGLLVDDQSQ--LFTGGF 400          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: F4PIZ0_CAVFA (Mandelate racemase/muconate lactonizing enzyme domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIZ0_CAVFA)

HSP 1 Score: 102 bits (254), Expect = 9.180e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   16 IEQPYDVQ---VSNRE------EWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLL-SCSSLGGDVDGGLLVDAEHQ 366
            +EQP+ V+   V  ++      EWK +   Y ++G+ + ADES+C  EDVA L  +   VN+KLEKTGGIR ALL V EA++  + +W+G MV S L ++ +A +L S S+ GGD+DGGLLVD + Q
Sbjct:  278 VEQPFPVETLKVKTKDTPRIIGEWKQIKELYFEQGLPLFADESICTHEDVAELVELVHGVNIKLEKTGGIRGALLAVTEAKKHNLDIWVGSMVGSSLNANAAAHILTSVSNYGGDLDGGLLVDDQSQ 404          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: A0A6B2L5Q3_9EUKA (MR_MLE_C domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5Q3_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 1.450e-22
Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    7 VYAIEQPYDVQVSNRE--EWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLLSCSSLGGDVDGGLLV 351
            +Y +EQP+ V ++N E  +W+L+  +Y ++GI + ADES+     +  +  +A  VN+KL+KTGGIR AL  V+ A +  + +W G+MVCS L +  +A LL  ++ GGD+DG LL+
Sbjct:  261 IYMVEQPFPVTITNEEYPKWRLLKDKYYEQGILICADESVSTSSGIKDIKQIANMVNIKLDKTGGIREALRTVEVARKENLVIWFGLMVCSSLSTRATATLLPLATFGGDLDGSLLI 377          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: D2VZL2_NAEGR (Chloromuconate cycloisomerase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VZL2_NAEGR)

HSP 1 Score: 98.6 bits (244), Expect = 3.020e-21
Identity = 55/135 (40.74%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 PHVYAIEQPYDVQVSNRE--EWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERR-GMHVWIGIMVCSILGSSTSAQLLSCSSLGGDVDGGLLVDAEHQQSIVTGGFRW 396
            P+ Y +EQP+ + V + E  +W+ V   Y ++GI + ADES+   E++A +      +N+KLEK+GGIR AL   + A++   + +W G MV S L  + S+ L+S + +GGD+DG LLV AEH Q    GGF W
Sbjct:  305 PYFYMLEQPFPILVESSESSKWEQVKQAYENEGILIFADESVNTFENIANIQSFIHGINIKLEKSGGIRGALTVSELAKKHYNLKLWFGCMVSSRLSCTCSSHLMSLAEIGGDLDGSLLV-AEHSQGF-EGGFDW 437          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: F0ZS95_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZS95_DICPU)

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-20
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   16 IEQPYDVQV-----------SNREEWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLL-SCSSLGGDVDGGLLVDAEHQ 366
            +EQP+ ++            S   EW  +  EY DKG  + ADES+C  +D+ +L  +   VN+KLEKTGGIR A+  + +A+  G+  WIG MV S L  S +A LL S S  GGD+DGGLL+D E Q
Sbjct: 1092 VEQPFPIETLKSTSGAAPLESELNEWVSIKKEYQDKGFLIFADESICTEKDLDSLVQLVHGVNIKLEKTGGIRYAISTLLKAKEMGLKTWIGSMVASSLDVSAAAHLLCSLSDFGGDLDGGLLIDDETQ 1220          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: Y4701_DICDI (Enolase superfamily member DDB_G0284701 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Y4701_DICDI)

HSP 1 Score: 94.7 bits (234), Expect = 6.020e-20
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   19 EQPYDVQVSNREEWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLL-SCSSLGGDVDGGLLVDAEHQ 366
            +Q  D+Q  N  EW  +  EY DKG+ + ADES+C  +D+  L  +   VN+KLEKTGGIR  L  + +A+  G+  WIG MV S L  S +A LL S S  GGD+DGGLL+D   Q
Sbjct:  293 DQKIDIQHLN--EWVSIKKEYQDKGLLIFADESICTEKDLDGLVQLVHGVNIKLEKTGGIRPGLSTLLKAKELGLKTWIGSMVASSLNVSAAAHLLCSLSDFGGDLDGGLLIDDATQ 407          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: A0BX97_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BX97_PARTE)

HSP 1 Score: 87.0 bits (214), Expect = 2.710e-17
Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 PHVYAIEQPYDVQVSNREEWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLLSCSSLGGDVDGGLLVD 354
            P +Y IEQP+ + +  +E W +V   Y ++ I + ADES+   +DV  L  V T VN+KLEK+ G R A+    +AE   +  W+GIM+ S L ++ +  LL  +++GGD+DG LLV+
Sbjct:  246 PFLYMIEQPFPL-IFEKEPWYIVKERYLEQKIEIYADESIKTSQDVVELQKVVTGVNVKLEKSSGYRGAVANFIKAEELMLKKWVGIMIGSSLIANQAINLLGLATIGGDIDGTLLVE 362          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: A0A151ZSJ6_9MYCE (Mandelate racemase/muconate lactonizing enzyme domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSJ6_9MYCE)

HSP 1 Score: 86.3 bits (212), Expect = 6.240e-17
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   16 IEQPYDVQV---------SNREEWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLLSC-SSLGGDVDGGLLVDAEHQ 366
            +EQP+ +++            ++W+ V  +Y  +G+ + ADES+   +D+  L  +   VN+KLEK+GG+R+AL  + +A+   + +WIG MV S L  S +  LLS  S LGGD+DGGLL++ E Q
Sbjct:  268 VEQPFPIELLKGDNPHRNEQLQQWRDVKKQYESEGLSIFADESVSSQKDIPDLLPLVHGVNVKLEKSGGLRSALSTILKAQESKLGIWIGCMVASSLNVSCACHLLSLFSDLGGDLDGGLLINDETQ 394          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: A0A5B8MK21_9CHLO (Enolase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MK21_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 3.950e-15
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    1 PHVYAIEQPY--DVQVSN-----REEWKLVVAEYADKGIRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLLSCSSLGGDVDGGLLVDAEHQ 366
            PH++ IEQP+  DV  S+     RE W     E A +GI V ADESM    DV  L      VN+KLEKTGG R A+    E +  G+ VW+G MV + L  +   ++LS S    D+DG LL   E Q
Sbjct:  283 PHLFMIEQPFPFDVPFSDSSPEEREGWARFKRECARRGISVYADESMRTSGDVKDLSPFCHGVNIKLEKTGGYREAVRAWRECQAGGLTVWLGCMVGTALNCNVIVEILSMSDGSVDLDGFLLTSPECQ 411          
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Match: A0A0V0QD11_PSEPJ (MR_MLE_C domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QD11_PSEPJ)

HSP 1 Score: 81.3 bits (199), Expect = 4.500e-15
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   94 IRVIADESMCMLEDVAALDGVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQLLSCSSLGGDVDGGLLVDAEHQQSIVTGGFRWGAGAQL 414
            I V  DES+   +DV  L       N KLEK GGIR AL  + +A + G  VWIGIMV S LG+S SAQ+L     G D+DGGLLV  +  +    GGF WG G ++
Sbjct:  391 ILVYGDESVATPDDVDLLFDFVDGFNFKLEKAGGIREALKGIQKARKYGKKVWIGIMVTSDLGTSQSAQILGEGDEG-DLDGGLLVFEDKFK----GGFEWGKGGEI 492          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127262.5488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000644E1716.150e-2344.12hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4PIZ0_CAVFA9.180e-2345.67Mandelate racemase/muconate lactonizing enzyme dom... [more]
A0A6B2L5Q3_9EUKA1.450e-2241.03MR_MLE_C domain-containing protein n=1 Tax=Arcella... [more]
D2VZL2_NAEGR3.020e-2140.74Chloromuconate cycloisomerase n=1 Tax=Naegleria gr... [more]
F0ZS95_DICPU1.600e-2043.41Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
Y4701_DICDI6.020e-2047.01Enolase superfamily member DDB_G0284701 n=1 Tax=Di... [more]
A0BX97_PARTE2.710e-1739.83Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A151ZSJ6_9MYCE6.240e-1737.80Mandelate racemase/muconate lactonizing enzyme dom... [more]
A0A5B8MK21_9CHLO3.950e-1541.86Enolase n=2 Tax=Chloropicon primus TaxID=1764295 R... [more]
A0A0V0QD11_PSEPJ4.500e-1546.73MR_MLE_C domain-containing protein n=1 Tax=Pseudoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127262contigM-pyrifera_M_contig127262:6..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue7e-19
Seed eggNOG ortholog5762.XP_002670421.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carboxylic acid catabolic process
EggNOG OGs2S1E1@2759,COG4948@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.4740682-CDS-M-pyrifera_M_contig127262:5..4581622815786.4740682-CDS-M-pyrifera_M_contig127262:5..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127262 6..458 +
1692277568.9110718-CDS-M-pyrifera_M_contig127262:5..4581692277568.9110718-CDS-M-pyrifera_M_contig127262:5..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127262 6..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127262.5488.1prot_M-pyrifera_M_contig127262.5488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127262 6..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127262.5488.1

>prot_M-pyrifera_M_contig127262.5488.1 ID=prot_M-pyrifera_M_contig127262.5488.1|Name=mRNA_M-pyrifera_M_contig127262.5488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
PHVYAIEQPYDVQVSNREEWKLVVAEYADKGIRVIADESMCMLEDVAALD
GVATCVNLKLEKTGGIRNALLCVDEAERRGMHVWIGIMVCSILGSSTSAQ
LLSCSSLGGDVDGGLLVDAEHQQSIVTGGFRWGAGAQLGSVLWDPSTVGV
G
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mRNA from alignment at M-pyrifera_M_contig127262:6..458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127262.5488.1 ID=mRNA_M-pyrifera_M_contig127262.5488.1|Name=mRNA_M-pyrifera_M_contig127262.5488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig127262:6..458+ (Macrocystis pyrifera P11B4 male)
CCACACGTGTACGCCATCGAACAGCCTTACGACGTGCAGGTCAGCAACCG CGAGGAATGGAAGCTGGTGGTGGCAGAGTATGCCGACAAGGGCATCCGTG TGATTGCTGACGAGAGCATGTGCATGCTCGAGGATGTGGCAGCGCTTGAC GGCGTTGCCACGTGCGTCAATCTCAAGCTGGAGAAGACTGGCGGCATTCG CAACGCACTGCTCTGCGTTGACGAGGCGGAACGCCGTGGAATGCACGTGT GGATTGGCATCATGGTCTGCAGCATCCTCGGCAGCAGCACCTCTGCCCAG CTGCTCTCCTGCAGTTCGCTGGGAGGCGACGTCGACGGCGGTCTTCTCGT TGATGCCGAGCACCAGCAGAGCATTGTGACTGGAGGCTTCCGCTGGGGCG CTGGCGCCCAACTTGGCTCTGTCCTCTGGGACCCCTCCACCGTCGGTGTT GGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127262:6..458+

>mRNA_M-pyrifera_M_contig127262.5488.1 ID=mRNA_M-pyrifera_M_contig127262.5488.1|Name=mRNA_M-pyrifera_M_contig127262.5488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig127262:6..458+ (Macrocystis pyrifera P11B4 male)
CCACACGTGTACGCCATCGAACAGCCTTACGACGTGCAGGTCAGCAACCG
CGAGGAATGGAAGCTGGTGGTGGCAGAGTATGCCGACAAGGGCATCCGTG
TGATTGCTGACGAGAGCATGTGCATGCTCGAGGATGTGGCAGCGCTTGAC
GGCGTTGCCACGTGCGTCAATCTCAAGCTGGAGAAGACTGGCGGCATTCG
CAACGCACTGCTCTGCGTTGACGAGGCGGAACGCCGTGGAATGCACGTGT
GGATTGGCATCATGGTCTGCAGCATCCTCGGCAGCAGCACCTCTGCCCAG
CTGCTCTCCTGCAGTTCGCTGGGAGGCGACGTCGACGGCGGTCTTCTCGT
TGATGCCGAGCACCAGCAGAGCATTGTGACTGGAGGCTTCCGCTGGGGCG
CTGGCGCCCAACTTGGCTCTGTCCTCTGGGACCCCTCCACCGTCGGTGTT
GGCCCACACGTGTACGCCATCGAACAGCCTTACGACGTGCAGGTCAGCAA
CCGCGAGGAATGGAAGCTGGTGGTGGCAGAGTATGCCGACAAGGGCATCC
GTGTGATTGCTGACGAGAGCATGTGCATGCTCGAGGATGTGGCAGCGCTT
GACGGCGTTGCCACGTGCGTCAATCTCAAGCTGGAGAAGACTGGCGGCAT
TCGCAACGCACTGCTCTGCGTTGACGAGGCGGAACGCCGTGGAATGCACG
TGTGGATTGGCATCATGGTCTGCAGCATCCTCGGCAGCAGCACCTCTGCC
CAGCTGCTCTCCTGCAGTTCGCTGGGAGGCGACGTCGACGGCGGTCTTCT
CGTTGATGCCGAGCACCAGCAGAGCATTGTGACTGGAGGCTTCCGCTGGG
GCGCTGGCGCCCAACTTGGCTCTGTCCTCTGGGACCCCTCCACCGTCGGT
GTTGGC
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