mRNA_M-pyrifera_M_contig1272.5481.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1272.5481.1
Unique NamemRNA_M-pyrifera_M_contig1272.5481.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: D8LJD9_ECTSI (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD9_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 4.450e-36
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    1 MSEEATVRQCLAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQFEGQR 276
            +SE   V + LAEERMNRT+SLPEC CLR PRVVSY+EVGDP G+ AF +LG+DSHRYMS L DK A+ RGVRL+CLDRPGRGR+S FE ++
Sbjct:   37 LSEGEAVARGLAEERMNRTLSLPECPCLRQPRVVSYAEVGDPKGFVAFFILGVDSHRYMSFLLDKPARARGVRLLCLDRPGRGRTSDFEDEK 128          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A7S3YHK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHK9_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-13
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   19 VRQCLAEERMNRTMSLPECMCLRVPRVV--SYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQFE 267
            +++CL  E +  +  L + + + +P  +  SY+EVGD +G+P    LG+DSHRY ++L +  A    +RLIC+DRPGRG SS  E
Sbjct:   62 LQECLTTEEILESPHLNQQIQINLPHHLNLSYAEVGDLNGFPMLAFLGVDSHRYAAILLEDLALEHKIRLICIDRPGRGLSSNLE 146          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 5.950e-13
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   31 LAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRS 255
            + EER NR+    +       + VSYS  G P G P FL LG+DSHR+ +  F+  A+ RG++LIC+DRPGRGRS
Sbjct:  177 IEEERYNRSFVRAD------GKTVSYSVAGVPDGLPVFLFLGLDSHRHSAAHFEDIARRRGLQLICIDRPGRGRS 245          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A4U7ATP3_9PEZI (Alpha/beta hydrolase fold-containing protein 33 n=2 Tax=Elsinoe australis TaxID=40998 RepID=A0A4U7ATP3_9PEZI)

HSP 1 Score: 68.6 bits (166), Expect = 1.840e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   19 VRQCLAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQF 264
            V   L   R+NRT+  P     +  R++S+SEVG P+GYP F+ +GM   R++S  +D+ A T  +RLI  DRPG G+S  +
Sbjct:  643 VNAFLTSPRLNRTVRHP-----KTNRIISFSEVGSPTGYPVFVCVGMGLTRFVSAFYDELATTLDLRLITPDRPGVGKSEPY 719          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: T0R0W9_SAPDV (AB hydrolase-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R0W9_SAPDV)

HSP 1 Score: 67.4 bits (163), Expect = 2.920e-11
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   31 LAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSS 258
            L +   NRT+ L +       R+VSY++VG   G P  L LGM  HR+ ++L +  A+ RG+RL+C+DRPG G SS
Sbjct:    6 LTDGAFNRTLRLAD------GRIVSYADVGAQDGMPVLLFLGMHGHRHATVLVEAVARQRGLRLLCIDRPGYGLSS 75          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A4S2MSG5_9PEZI (AB hydrolase-1 domain-containing protein (Fragment) n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MSG5_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 6.160e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   82 LRVP---RVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQFE 267
            LR+P   R++S+SEVGDPSG+  F+ +GM   RY++  +D+ A T G+RLI  DRPG G S+  E
Sbjct:  412 LRIPGTNRIISFSEVGDPSGFAVFVCVGMGLTRYVTAFYDELAATLGLRLITPDRPGVGESTAIE 476          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A6A7C7A3_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7C7A3_9PEZI)

HSP 1 Score: 63.2 bits (152), Expect = 6.890e-11
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   16 TVRQCLAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQF 264
            +V + L   R+NR +S P        RV+SYS+VGDP+G   F+  GM   RY+S  +++ A T  +RLI +DRPG G S  +
Sbjct:    2 SVLRTLQAPRLNRKLSHPA-----TGRVISYSDVGDPTGKAVFVCAGMGLTRYVSAFYEELASTLRLRLITVDRPGVGGSEPY 79          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A8J1VNX7_9TREE (MFS domain-containing protein n=1 Tax=Tremellales sp. Tagirdzhanova-0007 TaxID=2778382 RepID=A0A8J1VNX7_9TREE)

HSP 1 Score: 66.6 bits (161), Expect = 8.720e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   31 LAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQFEGQR 276
            L  E +NR + LP  +  R P  VS++EVG+PSG P  L LG+   R++  LFD  AK  G+RLIC+DR G G++     +R
Sbjct:  195 LRSEHLNRFIELPRPVPDR-PLRVSFAEVGNPSGRPILLFLGLGCVRHLIALFDDLAKAFGLRLICIDRWGLGKTENVSAER 275          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A8H4ACE5_GIGMA (Alpha/beta-hydrolase n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4ACE5_GIGMA)

HSP 1 Score: 65.5 bits (158), Expect = 2.150e-10
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   94 RVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQFE 267
            RVVS+SEVGD SG+P F+ LGM   RY    FD  A + G+RLIC DRPG G S   +
Sbjct:  213 RVVSFSEVGDRSGFPVFVFLGMGCVRYFIAFFDDLATSYGLRLICPDRPGIGLSDDVK 270          
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Match: A0A8K0L0U0_9PEZI (Uncharacterized protein n=1 Tax=Elsinoe batatas TaxID=2601811 RepID=A0A8K0L0U0_9PEZI)

HSP 1 Score: 65.5 bits (158), Expect = 2.220e-10
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   31 LAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLLLGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQF 264
            L   R+NRT+  P     +  R++S+SEVG P+GYP  + +GM   R++S  +D+ A T  +RLI  DRPG GRS  +
Sbjct:  590 LTNPRLNRTVRHP-----KTNRLISFSEVGAPTGYPVVVCVGMGLTRFVSAFYDELATTLNLRLITPDRPGVGRSEPY 662          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1272.5481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJD9_ECTSI4.450e-3669.57PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3YHK9_HETAK1.060e-1341.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FSU7_ECTSI5.950e-1348.00FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A4U7ATP3_9PEZI1.840e-1141.46Alpha/beta hydrolase fold-containing protein 33 n=... [more]
T0R0W9_SAPDV2.920e-1143.42AB hydrolase-1 domain-containing protein n=1 Tax=S... [more]
A0A4S2MSG5_9PEZI6.160e-1149.23AB hydrolase-1 domain-containing protein (Fragment... [more]
A0A6A7C7A3_9PEZI6.890e-1140.96Uncharacterized protein (Fragment) n=1 Tax=Piedrai... [more]
A0A8J1VNX7_9TREE8.720e-1143.90MFS domain-containing protein n=1 Tax=Tremellales ... [more]
A0A8H4ACE5_GIGMA2.150e-1055.17Alpha/beta-hydrolase n=1 Tax=Gigaspora margarita T... [more]
A0A8K0L0U0_9PEZI2.220e-1042.31Uncharacterized protein n=1 Tax=Elsinoe batatas Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1272contigM-pyrifera_M_contig1272:10538..11714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D8LJD9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ureidoglycolate hydrolase activity
EggNOG OGs2QTP8@2759,COG3194@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size279
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.991355-CDS-M-pyrifera_M_contig1272:10537..106751622815785.991355-CDS-M-pyrifera_M_contig1272:10537..10675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1272 10538..10675 +
1692277568.6536033-CDS-M-pyrifera_M_contig1272:10537..106751692277568.6536033-CDS-M-pyrifera_M_contig1272:10537..10675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1272 10538..10675 +
1622815786.003542-CDS-M-pyrifera_M_contig1272:11573..117141622815786.003542-CDS-M-pyrifera_M_contig1272:11573..11714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1272 11574..11714 +
1692277568.6652336-CDS-M-pyrifera_M_contig1272:11573..117141692277568.6652336-CDS-M-pyrifera_M_contig1272:11573..11714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1272 11574..11714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1272.5481.1prot_M-pyrifera_M_contig1272.5481.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1272 10538..11714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1272.5481.1

>prot_M-pyrifera_M_contig1272.5481.1 ID=prot_M-pyrifera_M_contig1272.5481.1|Name=mRNA_M-pyrifera_M_contig1272.5481.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MSEEATVRQCLAEERMNRTMSLPECMCLRVPRVVSYSEVGDPSGYPAFLL
LGMDSHRYMSLLFDKAAKTRGVRLICLDRPGRGRSSQFEGQR*
back to top

mRNA from alignment at M-pyrifera_M_contig1272:10538..11714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1272.5481.1 ID=mRNA_M-pyrifera_M_contig1272.5481.1|Name=mRNA_M-pyrifera_M_contig1272.5481.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1177bp|location=Sequence derived from alignment at M-pyrifera_M_contig1272:10538..11714+ (Macrocystis pyrifera P11B4 male)
ATGAGCGAAGAAGCGACAGTTCGGCAATGCTTGGCGGAGGAGAGAATGAA TCGCACCATGTCTCTACCGGAGTGCATGTGTCTCCGGGTACCACGAGTCG TAAGCTACTCTGAGGTTGGAGATCCGAGCGGCTATCCGGTATGTATATCT TGCTGGTATACGAAGTGTATGTTTTGCTTTTCGATACATTTATCTTCTTC ATTGGTACTGTTTTTAAAGTTGATTTTTAAGGTAGCTCCGTAAATGCAGC GATGGACGCAGAACATCGCAACTCAAGGTGACATGAAACGCGTAGTCTAA TGCAGCAGCAGCAGCAGTGACGCTGCATGATGTAGTGGAACGTTACGCAA GATACCAGGGGGTGCTCGTTGGTTTCGGAAACGCATGCACCCCCGAGCAC GTGCACCGCTGACTGTCATGTCGCCGTTAGAGCCGGTACAGTAGAAAGGC ATCAACCATTGCAGAGGCGCGCTACGATAGGGGTAGGACGTTTAGCCATC CGAGGCATATATTTCTGGCTGACCGGGCTCCTTGAACCAATATCGTAGGG ATACCATTGGTCTTTTACGTGTAATTCGTGAAATGCGTGTTAATAGGCTT TGGGATTGTTCAGCGAGTTGCACTTTTCACTTCTCTCAAAATCGGTTTTT GGGCGAGGTATTGAACTTGTTAAGTGAGGAGCCTCAGAAAATTCTCAGAA CATTCAGGTGCTTCCCCTACCGTAGCACGCGTCGAGATGACCGCCCCAGC CCACGCCTGCTTTGCGGTACGCCGTACCCGACGCGTTTATACTGTTCACG TGTAGTGTTACGCGCTGCGTGCCTGAAGACTTACAGCGTATCCGGTTTGT CGCGAGTACAGGCATACCCCAGTACATTAGGTTATTACAAAGTGTTTTTT GCAAGTATTCCGTTCGCTGGGTGCGTCTCGGCAGTCATGACCTTGCTCAT GTACCCGTTTATTGCCGAAATGAGCCGGTACGAGTATCGACCGGGCGCCC GCTTTTCGTGCGCCATCCTCACCCGTGGCGGAACAGGCGTTCCTTCTGCT AGGGATGGACTCCCACCGGTACATGTCGTTGTTGTTCGACAAGGCAGCCA AAACAAGGGGTGTTCGCCTCATTTGCCTCGACCGCCCAGGGAGGGGTCGC TCAAGTCAATTTGAGGGCCAGAGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1272:10538..11714+

>mRNA_M-pyrifera_M_contig1272.5481.1 ID=mRNA_M-pyrifera_M_contig1272.5481.1|Name=mRNA_M-pyrifera_M_contig1272.5481.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig1272:10538..11714+ (Macrocystis pyrifera P11B4 male)
ATGAGCGAAGAAGCGACAGTTCGGCAATGCTTGGCGGAGGAGAGAATGAA
TCGCACCATGTCTCTACCGGAGTGCATGTGTCTCCGGGTACCACGAGTCG
TAAGCTACTCTGAGGTTGGAGATCCGAGCGGCTATCCGATGAGCGAAGAA
GCGACAGTTCGGCAATGCTTGGCGGAGGAGAGAATGAATCGCACCATGTC
TCTACCGGAGTGCATGTGTCTCCGGGTACCACGAGTCGTAAGCTACTCTG
AGGTTGGAGATCCGAGCGGCTATCCGGCGTTCCTTCTGCTAGGGATGGAC
TCCCACCGGTACATGTCGTTGTTGTTCGACAAGGCAGCCAAAACAAGGGG
TGTTCGCCTCATTTGCCTCGACCGCCCAGGGAGGGGTCGCTCAAGTCAAT
TTGAGGGCCAGAGGTGAGCGTTCCTTCTGCTAGGGATGGACTCCCACCGG
TACATGTCGTTGTTGTTCGACAAGGCAGCCAAAACAAGGGGTGTTCGCCT
CATTTGCCTCGACCGCCCAGGGAGGGGTCGCTCAAGTCAATTTGAGGGCC
AGAGGTGA
back to top